PDB Short entry for 4CIZ HEADER ISOMERASE 18-DEC-13 4CIZ TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF THE CELLULAR RETINAL BINDING TITLE 2 PROTEIN WITH 9-CIS-RETINAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINALDEHYDE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELLULAR RETINALDEHYDE-BINDING PROTEIN, CELLULAR COMPND 5 RETINALDEHYDE BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS RETINALDEHYDE BINDING PROTEIN, VISUAL CYCLE, 9-CIS-RETINAL, CELLULAR KEYWDS 2 RETINAL BINDING PROTEIN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.BOLZE,R.E.HELBLING,R.L.OWEN,A.R.PEARSON,G.POMPIDOR,F.DWORKOWSKI, AUTHOR 2 M.R.FUCHS,J.FURRER,M.GOLCZAK,K.PALCZEWSKI,M.CASCELLA,A.STOCKER REVDAT 3 20-DEC-23 4CIZ 1 REMARK REVDAT 2 22-JAN-14 4CIZ 1 JRNL REVDAT 1 08-JAN-14 4CIZ 0 JRNL AUTH C.S.BOLZE,R.E.HELBLING,R.L.OWEN,A.R.PEARSON,G.POMPIDOR, JRNL AUTH 2 F.DWORKOWSKI,M.R.FUCHS,J.FURRER,M.GOLCZAK,K.PALCZEWSKI, JRNL AUTH 3 M.CASCELLA,A.STOCKER JRNL TITL HUMAN CELLULAR RETINALDEHYDE-BINDING PROTEIN HAS SECONDARY JRNL TITL 2 THERMAL 9-CIS-RETINAL ISOMERASE ACTIVITY. JRNL REF J.AM.CHEM.SOC. V. 136 137 2014 JRNL REFN ISSN 0002-7863 JRNL PMID 24328211 JRNL DOI 10.1021/JA411366W REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 6704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3604 - 5.3993 1.00 2718 143 0.2055 0.2509 REMARK 3 2 5.3993 - 4.2864 1.00 2739 148 0.2087 0.2321 REMARK 3 3 4.2864 - 3.7449 1.00 2696 143 0.2730 0.2424 REMARK 3 4 3.7449 - 3.4026 0.99 2694 142 0.3528 0.4424 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 126.8 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 115.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 102.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.86110 REMARK 3 B22 (A**2) : 8.86110 REMARK 3 B33 (A**2) : -17.72230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2391 REMARK 3 ANGLE : 0.567 3227 REMARK 3 CHIRALITY : 0.042 340 REMARK 3 PLANARITY : 0.003 422 REMARK 3 DIHEDRAL : 10.840 923 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 23:41) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5918 37.6017 27.3286 REMARK 3 T TENSOR REMARK 3 T11: 2.1994 T22: 1.9958 REMARK 3 T33: 1.4079 T12: -0.4736 REMARK 3 T13: -0.0411 T23: -0.5562 REMARK 3 L TENSOR REMARK 3 L11: 7.8860 L22: 4.5901 REMARK 3 L33: 9.6221 L12: 0.9865 REMARK 3 L13: -0.5561 L23: 1.5253 REMARK 3 S TENSOR REMARK 3 S11: 0.3000 S12: -0.3177 S13: 0.0568 REMARK 3 S21: 0.8084 S22: -0.1019 S23: -0.4012 REMARK 3 S31: -0.8162 S32: -0.9783 S33: -0.2458 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 42:55) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8415 30.7911 36.6263 REMARK 3 T TENSOR REMARK 3 T11: 2.9085 T22: 1.9403 REMARK 3 T33: 1.6348 T12: -0.4593 REMARK 3 T13: 0.1605 T23: -0.3218 REMARK 3 L TENSOR REMARK 3 L11: 2.0519 L22: 6.9728 REMARK 3 L33: 2.0070 L12: -3.4712 REMARK 3 L13: 3.1137 L23: 5.5738 REMARK 3 S TENSOR REMARK 3 S11: 1.5039 S12: -1.2444 S13: 1.4686 REMARK 3 S21: 1.2691 S22: 0.8299 S23: -0.9692 REMARK 3 S31: -1.3234 S32: 0.0174 S33: -2.2895 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 56:85) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1189 11.7135 42.8589 REMARK 3 T TENSOR REMARK 3 T11: 1.3719 T22: 3.0648 REMARK 3 T33: 1.6220 T12: -0.6570 REMARK 3 T13: -0.2950 T23: 0.3508 REMARK 3 L TENSOR REMARK 3 L11: 8.3400 L22: 9.6397 REMARK 3 L33: 2.1893 L12: -4.2700 REMARK 3 L13: 1.3293 L23: -2.8757 REMARK 3 S TENSOR REMARK 3 S11: 0.8681 S12: -2.2281 S13: -0.8490 REMARK 3 S21: 0.6311 S22: -1.3826 S23: 0.4318 REMARK 3 S31: 0.0217 S32: 0.9134 S33: 0.5386 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 86:98) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5679 16.8040 36.9401 REMARK 3 T TENSOR REMARK 3 T11: 1.5295 T22: 2.6147 REMARK 3 T33: 1.6530 T12: -1.0821 REMARK 3 T13: -0.3277 T23: 0.3613 REMARK 3 L TENSOR REMARK 3 L11: 2.9372 L22: 9.4653 REMARK 3 L33: 7.7546 L12: 1.2980 REMARK 3 L13: -1.2829 L23: 5.8943 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.2465 S13: -0.0152 REMARK 3 S21: -0.3899 S22: 0.2387 S23: -1.0539 REMARK 3 S31: -0.4196 S32: 1.4365 S33: -0.4623 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 99:143) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5602 14.7805 25.7713 REMARK 3 T TENSOR REMARK 3 T11: 1.4786 T22: 1.6464 REMARK 3 T33: 1.6775 T12: -0.5713 REMARK 3 T13: -0.3221 T23: 0.1994 REMARK 3 L TENSOR REMARK 3 L11: 1.2314 L22: 4.6137 REMARK 3 L33: 5.1821 L12: 1.7657 REMARK 3 L13: -0.6364 L23: -0.4875 REMARK 3 S TENSOR REMARK 3 S11: 0.4016 S12: -1.3190 S13: -1.1200 REMARK 3 S21: -0.0972 S22: -1.2266 S23: -1.6078 REMARK 3 S31: -1.3717 S32: 1.7076 S33: 0.7275 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 144:185) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1584 23.4104 13.0419 REMARK 3 T TENSOR REMARK 3 T11: 1.5470 T22: 1.3685 REMARK 3 T33: 1.3940 T12: -0.6263 REMARK 3 T13: -0.2859 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 4.8858 L22: 10.0185 REMARK 3 L33: 9.2610 L12: -1.4558 REMARK 3 L13: -0.9991 L23: 1.5010 REMARK 3 S TENSOR REMARK 3 S11: -0.2844 S12: -0.1394 S13: 0.5531 REMARK 3 S21: -1.0291 S22: -1.0833 S23: -0.9428 REMARK 3 S31: -1.7490 S32: 1.1707 S33: 1.1957 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 186:255) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0786 18.1984 12.8337 REMARK 3 T TENSOR REMARK 3 T11: 1.8375 T22: 1.1086 REMARK 3 T33: 1.1457 T12: -0.7763 REMARK 3 T13: -0.1863 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 3.2540 L22: 8.2616 REMARK 3 L33: 5.7362 L12: -0.0841 REMARK 3 L13: -1.1440 L23: 1.3476 REMARK 3 S TENSOR REMARK 3 S11: 0.2582 S12: -0.1726 S13: -0.3769 REMARK 3 S21: -1.4528 S22: -1.2033 S23: -0.7484 REMARK 3 S31: -1.3196 S32: 1.2170 S33: 0.5800 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 256:295) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7649 27.5537 11.1747 REMARK 3 T TENSOR REMARK 3 T11: 2.0082 T22: 0.9124 REMARK 3 T33: 1.4094 T12: -0.3464 REMARK 3 T13: -0.2966 T23: -0.1683 REMARK 3 L TENSOR REMARK 3 L11: 2.8904 L22: 9.8943 REMARK 3 L33: 2.6632 L12: 2.9399 REMARK 3 L13: -0.4110 L23: -2.8237 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.1289 S13: 0.7631 REMARK 3 S21: 0.2197 S22: -0.3207 S23: 0.6423 REMARK 3 S31: -1.5326 S32: -0.2329 S33: 0.2759 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 296:306) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0979 32.3403 15.3244 REMARK 3 T TENSOR REMARK 3 T11: 3.3329 T22: 1.1558 REMARK 3 T33: 1.9624 T12: -2.8554 REMARK 3 T13: 0.2941 T23: -0.2076 REMARK 3 L TENSOR REMARK 3 L11: 2.7005 L22: 4.7888 REMARK 3 L33: 4.1568 L12: 0.7439 REMARK 3 L13: -0.3794 L23: 0.7100 REMARK 3 S TENSOR REMARK 3 S11: -0.9161 S12: -0.1066 S13: -0.2602 REMARK 3 S21: -0.0904 S22: -0.9511 S23: -0.6308 REMARK 3 S31: 0.1489 S32: 1.0875 S33: 1.0744 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1290059239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DCCM REMARK 200 OPTICS : M1 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6770 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.740 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 1.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HY5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 199.83133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.91567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 149.87350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.95783 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 249.78917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 199.83133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 99.91567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 49.95783 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 149.87350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 249.78917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 VAL A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 PHE A 8 REMARK 465 ARG A 9 REMARK 465 MET A 10 REMARK 465 VAL A 11 REMARK 465 PRO A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 GLN A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 ARG A 19 REMARK 465 ALA A 20 REMARK 465 GLN A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 307 REMARK 465 PRO A 308 REMARK 465 GLN A 309 REMARK 465 ALA A 310 REMARK 465 GLN A 311 REMARK 465 ALA A 312 REMARK 465 GLU A 313 REMARK 465 ASN A 314 REMARK 465 THR A 315 REMARK 465 ALA A 316 REMARK 465 PHE A 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 34 -76.78 61.19 REMARK 500 SER A 38 -56.92 -144.15 REMARK 500 LEU A 40 72.07 -113.44 REMARK 500 PRO A 41 -145.44 -103.79 REMARK 500 HIS A 43 18.79 48.13 REMARK 500 GLU A 56 -134.08 -78.51 REMARK 500 ARG A 103 44.51 -103.30 REMARK 500 PHE A 105 68.23 60.15 REMARK 500 ASP A 129 -98.85 -68.65 REMARK 500 ASP A 152 -168.25 -74.59 REMARK 500 CYS A 199 126.67 -170.98 REMARK 500 PHE A 204 42.41 -95.15 REMARK 500 SER A 230 -59.92 -143.72 REMARK 500 PRO A 232 41.49 -72.62 REMARK 500 ARG A 234 77.29 -112.59 REMARK 500 LEU A 273 40.10 -95.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 RETINAL (RET): 9-CIS-RETINAL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 RET A 1307 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 1308 DBREF 4CIZ A 1 317 UNP P12271 RLBP1_HUMAN 1 317 SEQRES 1 A 317 MET SER GLU GLY VAL GLY THR PHE ARG MET VAL PRO GLU SEQRES 2 A 317 GLU GLU GLN GLU LEU ARG ALA GLN LEU GLU GLN LEU THR SEQRES 3 A 317 THR LYS ASP HIS GLY PRO VAL PHE GLY PRO CYS SER GLN SEQRES 4 A 317 LEU PRO ARG HIS THR LEU GLN LYS ALA LYS ASP GLU LEU SEQRES 5 A 317 ASN GLU ARG GLU GLU THR ARG GLU GLU ALA VAL ARG GLU SEQRES 6 A 317 LEU GLN GLU MET VAL GLN ALA GLN ALA ALA SER GLY GLU SEQRES 7 A 317 GLU LEU ALA VAL ALA VAL ALA GLU ARG VAL GLN GLU LYS SEQRES 8 A 317 ASP SER GLY PHE PHE LEU ARG PHE ILE ARG ALA ARG LYS SEQRES 9 A 317 PHE ASN VAL GLY ARG ALA TYR GLU LEU LEU ARG GLY TYR SEQRES 10 A 317 VAL ASN PHE ARG LEU GLN TYR PRO GLU LEU PHE ASP SER SEQRES 11 A 317 LEU SER PRO GLU ALA VAL ARG CYS THR ILE GLU ALA GLY SEQRES 12 A 317 TYR PRO GLY VAL LEU SER SER ARG ASP LYS TYR GLY ARG SEQRES 13 A 317 VAL VAL MET LEU PHE ASN ILE GLU ASN TRP GLN SER GLN SEQRES 14 A 317 GLU ILE THR PHE ASP GLU ILE LEU GLN ALA TYR CYS PHE SEQRES 15 A 317 ILE LEU GLU LYS LEU LEU GLU ASN GLU GLU THR GLN ILE SEQRES 16 A 317 ASN GLY PHE CYS ILE ILE GLU ASN PHE LYS GLY PHE THR SEQRES 17 A 317 MET GLN GLN ALA ALA SER LEU ARG THR SER ASP LEU ARG SEQRES 18 A 317 LYS MET VAL ASP MET LEU GLN ASP SER PHE PRO ALA ARG SEQRES 19 A 317 PHE LYS ALA ILE HIS PHE ILE HIS GLN PRO TRP TYR PHE SEQRES 20 A 317 THR THR THR TYR ASN VAL VAL LYS PRO PHE LEU LYS SER SEQRES 21 A 317 LYS LEU LEU GLU ARG VAL PHE VAL HIS GLY ASP ASP LEU SEQRES 22 A 317 SER GLY PHE TYR GLN GLU ILE ASP GLU ASN ILE LEU PRO SEQRES 23 A 317 SER ASP PHE GLY GLY THR LEU PRO LYS TYR ASP GLY LYS SEQRES 24 A 317 ALA VAL ALA GLU GLN LEU PHE GLY PRO GLN ALA GLN ALA SEQRES 25 A 317 GLU ASN THR ALA PHE HET RET A1307 14 HET TLA A1308 10 HETNAM RET RETINAL HETNAM TLA L(+)-TARTARIC ACID FORMUL 2 RET C20 H28 O FORMUL 3 TLA C4 H6 O6 FORMUL 4 HOH *4(H2 O) HELIX 1 1 HIS A 43 ASP A 50 1 8 HELIX 2 2 GLU A 57 ALA A 75 1 19 HELIX 3 3 GLU A 78 VAL A 88 1 11 HELIX 4 4 GLN A 89 LYS A 91 5 3 HELIX 5 5 ASP A 92 ARG A 103 1 12 HELIX 6 6 ASN A 106 TYR A 124 1 19 HELIX 7 7 PRO A 125 PHE A 128 5 4 HELIX 8 8 SER A 132 ALA A 142 1 11 HELIX 9 9 THR A 172 LEU A 188 1 17 HELIX 10 10 ASN A 190 GLY A 197 1 8 HELIX 11 11 THR A 208 SER A 214 1 7 HELIX 12 12 ARG A 216 GLN A 228 1 13 HELIX 13 13 TYR A 246 LYS A 255 1 10 HELIX 14 14 LYS A 259 GLU A 264 1 6 HELIX 15 15 ASP A 281 LEU A 285 5 5 HELIX 16 16 PRO A 286 GLY A 290 5 5 HELIX 17 17 ASP A 297 PHE A 306 1 10 SHEET 1 AA 5 GLY A 146 ARG A 151 0 SHEET 2 AA 5 VAL A 157 ASN A 162 -1 O VAL A 158 N LEU A 148 SHEET 3 AA 5 PHE A 198 ASN A 203 1 O CYS A 199 N MET A 159 SHEET 4 AA 5 PHE A 235 ILE A 241 1 N LYS A 236 O PHE A 198 SHEET 5 AA 5 VAL A 266 GLY A 270 1 O PHE A 267 N PHE A 240 CISPEP 1 TYR A 144 PRO A 145 0 -0.62 SITE 1 AC1 4 PHE A 204 MET A 223 PHE A 240 VAL A 254 SITE 1 AC2 6 LYS A 104 ALA A 233 ARG A 234 LYS A 236 SITE 2 AC2 6 LYS A 261 ARG A 265 CRYST1 70.556 70.556 299.747 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014173 0.008183 0.000000 0.00000 SCALE2 0.000000 0.016366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003336 0.00000