PDB Short entry for 4CQ8 HEADER OXIDOREDUCTASE 12-FEB-14 4CQ8 TITLE PLASMODIUM FALCIPARUM DIHYDROOROTATE DEHYDROGENASE (DHODH) IN COMPLEX TITLE 2 WITH GENZ-669178 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RESIDUES 384-413 DELETED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, DHODH EXPDTA X-RAY DIFFRACTION AUTHOR P.ROWLAND REVDAT 5 08-MAY-19 4CQ8 1 REMARK REVDAT 4 06-MAR-19 4CQ8 1 REMARK REVDAT 3 13-AUG-14 4CQ8 1 JRNL REVDAT 2 14-MAY-14 4CQ8 1 JRNL REVDAT 1 30-APR-14 4CQ8 0 JRNL AUTH L.S.ROSS,F.JAVIER GAMO,M.J.E.LAFUENTE-MONASTERIO, JRNL AUTH 2 O.M.P.SINGH,P.ROWLAND,R.C.WIEGAND,D.F.WIRTH JRNL TITL IN VITRO RESISTANCE SELECTIONS FOR PLASMODIUM FALCIPARUM JRNL TITL 2 DIHYDROOROTATE DEHYDROGENASE INHIBITORS GIVE MUTANTS WITH JRNL TITL 3 MULTIPLE POINT MUTATIONS IN THE DRUG-BINDING SITE AND JRNL TITL 4 ALTERED GROWTH. JRNL REF J.BIOL.CHEM. V. 289 17980 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24782313 JRNL DOI 10.1074/JBC.M114.558353 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 69057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2784 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.28 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4325 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2347 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4139 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE : 0.2738 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 186 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5990 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 568 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41820 REMARK 3 B22 (A**2) : 8.09360 REMARK 3 B33 (A**2) : -8.51180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.98700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.274 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.138 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.119 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.135 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.118 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6248 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8432 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2240 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 174 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 986 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6248 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 822 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7635 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.98 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.16 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 11.4343 9.0993 42.3482 REMARK 3 T TENSOR REMARK 3 T11: -0.2661 T22: -0.1936 REMARK 3 T33: 0.1855 T12: 0.0068 REMARK 3 T13: -0.0796 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.2858 L22: 2.8933 REMARK 3 L33: 0.7459 L12: 0.0358 REMARK 3 L13: 0.1393 L23: 0.3234 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: 0.1010 S13: -0.0906 REMARK 3 S21: -0.2772 S22: -0.0665 S23: 0.2476 REMARK 3 S31: -0.0224 S32: -0.0368 S33: 0.0467 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 47.4040 -7.2565 11.3150 REMARK 3 T TENSOR REMARK 3 T11: -0.1004 T22: -0.2108 REMARK 3 T33: -0.0698 T12: 0.0088 REMARK 3 T13: -0.0601 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 1.5247 L22: 3.6370 REMARK 3 L33: 1.2645 L12: 0.4672 REMARK 3 L13: 0.3891 L23: 0.0346 REMARK 3 S TENSOR REMARK 3 S11: 0.0775 S12: -0.0925 S13: 0.0669 REMARK 3 S21: 0.3921 S22: -0.0655 S23: -0.0558 REMARK 3 S31: -0.0407 S32: 0.1017 S33: -0.0120 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1290059719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CO-CRYSTALS WERE GROWN BY VAPOUR REMARK 280 DIFFUSION AT 20 DEGREES C FROM A SOLUTION OF PROTEIN AT 10 MG/ML REMARK 280 IN BUFFER (10 MM HEPES PH 7.8, 100 MM SODIUM CHLORIDE, 5% REMARK 280 GLYCEROL, 10 MM DTT, 1 MM LDAO) CONTAINING 2 MM L-DIHYDROOROTATE, REMARK 280 2 MM GENZ-669178, 10 MM LDAO, MIXED WITH AN EQUAL VOLUME OF REMARK 280 PRECIPITANT (24% PEG 3350, 0.2M LITHIUM CHLORIDE), VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.91000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.56500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.91000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.56500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 ALA A 147 REMARK 465 GLU A 148 REMARK 465 ASN A 149 REMARK 465 LEU A 150 REMARK 465 TYR A 151 REMARK 465 PHE A 152 REMARK 465 GLN A 153 REMARK 465 GLY A 154 REMARK 465 ILE A 379 REMARK 465 MET A 380 REMARK 465 ASN A 381 REMARK 465 ASP A 382 REMARK 465 GLU A 383 REMARK 465 LYS A 568 REMARK 465 SER A 569 REMARK 465 MET B 139 REMARK 465 GLY B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 ALA B 147 REMARK 465 GLU B 148 REMARK 465 ASN B 149 REMARK 465 LEU B 150 REMARK 465 TYR B 151 REMARK 465 PHE B 152 REMARK 465 GLN B 153 REMARK 465 GLY B 154 REMARK 465 ILE B 379 REMARK 465 MET B 380 REMARK 465 ASN B 381 REMARK 465 ASP B 382 REMARK 465 GLU B 383 REMARK 465 LYS B 568 REMARK 465 SER B 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -127.45 56.26 REMARK 500 ASP A 228 74.65 -111.02 REMARK 500 CYS A 233 56.41 -148.00 REMARK 500 TYR A 528 -72.95 -145.92 REMARK 500 LYS B 213 -127.26 56.24 REMARK 500 ASP B 228 75.87 -111.37 REMARK 500 CYS B 233 56.34 -145.19 REMARK 500 TYR B 528 -72.21 -145.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2438 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A2443 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B2051 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B2232 DISTANCE = 9.27 ANGSTROMS REMARK 525 HOH B2234 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH B2236 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B2237 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH B2240 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B2241 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH B2246 DISTANCE = 6.79 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORO A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JBW A 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORO B 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JBW B 4000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CQ9 RELATED DB: PDB REMARK 900 PLASMODIUM FALCIPARUM DIHYDROOROTATE DEHYDROGENASE (DHODH) IN REMARK 900 COMPLEX WITH IDI-6253 REMARK 900 RELATED ID: 4CQA RELATED DB: PDB REMARK 900 PLASMODIUM FALCIPARUM DIHYDROOROTATE DEHYDROGENASE (DHODH) IN REMARK 900 COMPLEX WITH IDI-6273 DBREF 4CQ8 A 158 383 UNP Q54A96 Q54A96_PLAFA 158 383 DBREF 4CQ8 A 414 569 UNP Q54A96 Q54A96_PLAFA 414 569 DBREF 4CQ8 B 158 383 UNP Q54A96 Q54A96_PLAFA 158 383 DBREF 4CQ8 B 414 569 UNP Q54A96 Q54A96_PLAFA 414 569 SEQADV 4CQ8 MET A 139 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 GLY A 140 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS A 141 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS A 142 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS A 143 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS A 144 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS A 145 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS A 146 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 ALA A 147 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 GLU A 148 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 ASN A 149 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 LEU A 150 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 TYR A 151 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 PHE A 152 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 GLN A 153 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 GLY A 154 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 ALA A 155 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 ASP A 156 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 PRO A 157 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 MET B 139 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 GLY B 140 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS B 141 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS B 142 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS B 143 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS B 144 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS B 145 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 HIS B 146 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 ALA B 147 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 GLU B 148 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 ASN B 149 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 LEU B 150 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 TYR B 151 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 PHE B 152 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 GLN B 153 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 GLY B 154 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 ALA B 155 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 ASP B 156 UNP Q54A96 EXPRESSION TAG SEQADV 4CQ8 PRO B 157 UNP Q54A96 EXPRESSION TAG SEQRES 1 A 401 MET GLY HIS HIS HIS HIS HIS HIS ALA GLU ASN LEU TYR SEQRES 2 A 401 PHE GLN GLY ALA ASP PRO PHE GLU SER TYR ASN PRO GLU SEQRES 3 A 401 PHE PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU LYS SEQRES 4 A 401 TYR ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU LEU SEQRES 5 A 401 LEU GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER ASN SEQRES 6 A 401 ASP SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU ASP SEQRES 7 A 401 PHE ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP LYS SEQRES 8 A 401 ASN GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY PHE SEQRES 9 A 401 SER PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY GLN SEQRES 10 A 401 THR GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL GLU SEQRES 11 A 401 SER ARG SER ILE ILE ASN SER CYS GLY PHE ASN ASN MET SEQRES 12 A 401 GLY CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE ARG SEQRES 13 A 401 LYS ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS ILE SEQRES 14 A 401 VAL GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL ASN SEQRES 15 A 401 ILE VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE GLY SEQRES 16 A 401 ARG TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER PRO SEQRES 17 A 401 ASN THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY LYS SEQRES 18 A 401 LEU LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE ASP SEQRES 19 A 401 ASN LEU GLU LYS ASN ASN ILE MET ASN ASP GLU PHE LEU SEQRES 20 A 401 TRP PHE ASN THR THR LYS LYS LYS PRO LEU VAL PHE VAL SEQRES 21 A 401 LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN LYS LYS GLU SEQRES 22 A 401 ILE ALA ASP VAL LEU LEU GLU THR ASN ILE ASP GLY MET SEQRES 23 A 401 ILE ILE SER ASN THR THR THR GLN ILE ASN ASP ILE LYS SEQRES 24 A 401 SER PHE GLU ASN LYS LYS GLY GLY VAL SER GLY ALA LYS SEQRES 25 A 401 LEU LYS ASP ILE SER THR LYS PHE ILE CYS GLU MET TYR SEQRES 26 A 401 ASN TYR THR ASN LYS GLN ILE PRO ILE ILE ALA SER GLY SEQRES 27 A 401 GLY ILE PHE SER GLY LEU ASP ALA LEU GLU LYS ILE GLU SEQRES 28 A 401 ALA GLY ALA SER VAL CYS GLN LEU TYR SER CYS LEU VAL SEQRES 29 A 401 PHE ASN GLY MET LYS SER ALA VAL GLN ILE LYS ARG GLU SEQRES 30 A 401 LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR TYR ASN LEU SEQRES 31 A 401 LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SER SEQRES 1 B 401 MET GLY HIS HIS HIS HIS HIS HIS ALA GLU ASN LEU TYR SEQRES 2 B 401 PHE GLN GLY ALA ASP PRO PHE GLU SER TYR ASN PRO GLU SEQRES 3 B 401 PHE PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU LYS SEQRES 4 B 401 TYR ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU LEU SEQRES 5 B 401 LEU GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER ASN SEQRES 6 B 401 ASP SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU ASP SEQRES 7 B 401 PHE ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP LYS SEQRES 8 B 401 ASN GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY PHE SEQRES 9 B 401 SER PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY GLN SEQRES 10 B 401 THR GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL GLU SEQRES 11 B 401 SER ARG SER ILE ILE ASN SER CYS GLY PHE ASN ASN MET SEQRES 12 B 401 GLY CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE ARG SEQRES 13 B 401 LYS ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS ILE SEQRES 14 B 401 VAL GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL ASN SEQRES 15 B 401 ILE VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE GLY SEQRES 16 B 401 ARG TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER PRO SEQRES 17 B 401 ASN THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY LYS SEQRES 18 B 401 LEU LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE ASP SEQRES 19 B 401 ASN LEU GLU LYS ASN ASN ILE MET ASN ASP GLU PHE LEU SEQRES 20 B 401 TRP PHE ASN THR THR LYS LYS LYS PRO LEU VAL PHE VAL SEQRES 21 B 401 LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN LYS LYS GLU SEQRES 22 B 401 ILE ALA ASP VAL LEU LEU GLU THR ASN ILE ASP GLY MET SEQRES 23 B 401 ILE ILE SER ASN THR THR THR GLN ILE ASN ASP ILE LYS SEQRES 24 B 401 SER PHE GLU ASN LYS LYS GLY GLY VAL SER GLY ALA LYS SEQRES 25 B 401 LEU LYS ASP ILE SER THR LYS PHE ILE CYS GLU MET TYR SEQRES 26 B 401 ASN TYR THR ASN LYS GLN ILE PRO ILE ILE ALA SER GLY SEQRES 27 B 401 GLY ILE PHE SER GLY LEU ASP ALA LEU GLU LYS ILE GLU SEQRES 28 B 401 ALA GLY ALA SER VAL CYS GLN LEU TYR SER CYS LEU VAL SEQRES 29 B 401 PHE ASN GLY MET LYS SER ALA VAL GLN ILE LYS ARG GLU SEQRES 30 B 401 LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR TYR ASN LEU SEQRES 31 B 401 LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SER HET FMN A 800 31 HET ORO A 900 11 HET JBW A4000 23 HET FMN B 800 31 HET ORO B 900 11 HET JBW B4000 23 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM JBW 5-(4-CYANO-2-METHYL-1H-BENZIMIDAZOL-1-YL)-N- HETNAM 2 JBW CYCLOPROPYLTHIOPHENE-2-CARBOXAMIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 ORO 2(C5 H4 N2 O4) FORMUL 5 JBW 2(C17 H14 N4 O S) FORMUL 9 HOH *568(H2 O) HELIX 1 1 PHE A 165 ILE A 179 1 15 HELIX 2 2 ASP A 180 TYR A 194 1 15 HELIX 3 3 SER A 205 CYS A 209 5 5 HELIX 4 4 CYS A 233 LYS A 239 1 7 HELIX 5 5 GLY A 282 ASP A 300 1 19 HELIX 6 6 LYS A 301 SER A 304 5 4 HELIX 7 7 ASN A 320 GLY A 333 1 14 HELIX 8 8 ARG A 334 ALA A 336 5 3 HELIX 9 9 GLY A 350 GLN A 355 5 6 HELIX 10 10 GLU A 356 ASN A 378 1 23 HELIX 11 11 ASN A 435 ASN A 450 1 16 HELIX 12 12 ILE A 466 GLU A 470 5 5 HELIX 13 13 LEU A 481 THR A 496 1 16 HELIX 14 14 SER A 510 GLY A 521 1 12 HELIX 15 15 TYR A 528 GLY A 535 1 8 HELIX 16 16 LYS A 537 ARG A 553 1 17 HELIX 17 17 ASN A 557 ILE A 562 5 6 HELIX 18 18 GLY A 563 SER A 567 5 5 HELIX 19 19 PHE B 166 ILE B 179 1 14 HELIX 20 20 ASP B 180 TYR B 194 1 15 HELIX 21 21 SER B 205 CYS B 209 5 5 HELIX 22 22 CYS B 233 LYS B 239 1 7 HELIX 23 23 GLY B 282 ASP B 300 1 19 HELIX 24 24 LYS B 301 SER B 304 5 4 HELIX 25 25 ASN B 320 GLY B 333 1 14 HELIX 26 26 ARG B 334 ALA B 336 5 3 HELIX 27 27 GLY B 350 GLN B 355 5 6 HELIX 28 28 GLU B 356 ASN B 378 1 23 HELIX 29 29 ASN B 435 ASN B 450 1 16 HELIX 30 30 ILE B 466 GLU B 470 5 5 HELIX 31 31 LEU B 481 THR B 496 1 16 HELIX 32 32 SER B 510 GLY B 521 1 12 HELIX 33 33 TYR B 528 GLY B 535 1 8 HELIX 34 34 LYS B 537 ARG B 553 1 17 HELIX 35 35 ASN B 557 ILE B 562 5 6 HELIX 36 36 GLY B 563 SER B 567 5 5 SHEET 1 AA 2 THR A 210 ILE A 212 0 SHEET 2 AA 2 LEU A 215 PHE A 217 -1 O LEU A 215 N ILE A 212 SHEET 1 AB 9 PHE A 221 VAL A 223 0 SHEET 2 AB 9 ALA A 522 LEU A 527 1 O CYS A 525 N GLY A 222 SHEET 3 AB 9 ILE A 502 SER A 505 1 O ILE A 502 N SER A 523 SHEET 4 AB 9 GLY A 453 ILE A 456 1 O MET A 454 N ILE A 503 SHEET 5 AB 9 LEU A 425 LEU A 430 1 O VAL A 428 N ILE A 455 SHEET 6 AB 9 TYR A 338 ASN A 342 1 O ILE A 339 N PHE A 427 SHEET 7 AB 9 ILE A 307 ILE A 312 1 O VAL A 310 N ALA A 340 SHEET 8 AB 9 PHE A 244 ILE A 250 1 O ILE A 245 N GLY A 309 SHEET 9 AB 9 PHE A 221 VAL A 223 1 O VAL A 223 N GLU A 246 SHEET 1 AC 3 ILE A 263 ASP A 266 0 SHEET 2 AC 3 SER A 271 ASN A 274 -1 O SER A 271 N ASP A 266 SHEET 3 AC 3 GLY A 475 GLY A 478 -1 O GLY A 475 N ASN A 274 SHEET 1 BA 2 THR B 210 ILE B 212 0 SHEET 2 BA 2 LEU B 215 PHE B 217 -1 O LEU B 215 N ILE B 212 SHEET 1 BB 9 PHE B 221 VAL B 223 0 SHEET 2 BB 9 ALA B 522 LEU B 527 1 O CYS B 525 N GLY B 222 SHEET 3 BB 9 ILE B 502 SER B 505 1 O ILE B 502 N SER B 523 SHEET 4 BB 9 GLY B 453 ILE B 456 1 O MET B 454 N ILE B 503 SHEET 5 BB 9 LEU B 425 LEU B 430 1 O VAL B 428 N ILE B 455 SHEET 6 BB 9 TYR B 338 ASN B 342 1 O ILE B 339 N PHE B 427 SHEET 7 BB 9 ILE B 307 ILE B 312 1 O VAL B 310 N ALA B 340 SHEET 8 BB 9 PHE B 244 ILE B 250 1 O ILE B 245 N GLY B 309 SHEET 9 BB 9 PHE B 221 VAL B 223 1 O VAL B 223 N GLU B 246 SHEET 1 BC 3 ILE B 263 ASP B 266 0 SHEET 2 BC 3 SER B 271 ASN B 274 -1 O SER B 271 N ASP B 266 SHEET 3 BC 3 GLY B 475 GLY B 478 -1 O GLY B 475 N ASN B 274 CISPEP 1 GLY A 248 THR A 249 0 4.22 CISPEP 2 LYS A 260 PRO A 261 0 -1.66 CISPEP 3 ILE A 456 SER A 457 0 3.18 CISPEP 4 GLY B 248 THR B 249 0 3.89 CISPEP 5 LYS B 260 PRO B 261 0 -2.78 CISPEP 6 ILE B 456 SER B 457 0 2.19 SITE 1 AC1 22 ALA A 224 ALA A 225 GLY A 226 LYS A 229 SITE 2 AC1 22 THR A 249 ASN A 274 ASN A 342 LYS A 429 SITE 3 AC1 22 SER A 457 ASN A 458 SER A 477 GLY A 478 SITE 4 AC1 22 SER A 505 GLY A 506 GLY A 507 TYR A 528 SITE 5 AC1 22 SER A 529 ORO A 900 HOH A2083 HOH A2280 SITE 6 AC1 22 HOH A2281 HOH A2283 SITE 1 AC2 11 LYS A 229 ASN A 274 CYS A 276 GLY A 277 SITE 2 AC2 11 PHE A 278 ASN A 342 SER A 345 ASN A 347 SITE 3 AC2 11 ASN A 458 THR A 459 FMN A 800 SITE 1 AC3 12 TYR A 168 PHE A 171 GLY A 181 CYS A 184 SITE 2 AC3 12 HIS A 185 PHE A 188 ILE A 263 ARG A 265 SITE 3 AC3 12 LEU A 531 VAL A 532 MET A 536 HOH A2006 SITE 1 AC4 22 ALA B 224 ALA B 225 GLY B 226 LYS B 229 SITE 2 AC4 22 THR B 249 ASN B 274 ASN B 342 LYS B 429 SITE 3 AC4 22 SER B 457 ASN B 458 SER B 477 GLY B 478 SITE 4 AC4 22 SER B 505 GLY B 506 GLY B 507 TYR B 528 SITE 5 AC4 22 SER B 529 ORO B 900 HOH B2071 HOH B2206 SITE 6 AC4 22 HOH B2207 HOH B2209 SITE 1 AC5 11 LYS B 229 ASN B 274 CYS B 276 GLY B 277 SITE 2 AC5 11 PHE B 278 ASN B 342 SER B 345 ASN B 347 SITE 3 AC5 11 ASN B 458 THR B 459 FMN B 800 SITE 1 AC6 12 TYR B 168 PHE B 171 CYS B 175 GLY B 181 SITE 2 AC6 12 CYS B 184 HIS B 185 PHE B 188 ARG B 265 SITE 3 AC6 12 LEU B 531 VAL B 532 MET B 536 HOH B2005 CRYST1 147.820 69.130 103.850 90.00 103.84 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006765 0.000000 0.001667 0.00000 SCALE2 0.000000 0.014465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009917 0.00000