PDB Short entry for 4CTD HEADER TRANSPORT PROTEIN 13-MAR-14 4CTD TITLE X-RAY STRUCTURE OF AN ENGINEERED OMPG LOOP6-DELETION COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN G; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MATURE PROTEIN WITHOUT PELB LEADER SEQUENCE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: DELETION OF FLEXIBLE LOOP6 WITH OPTIMIZED B-TURN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 ATCC: 11775; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: OMP9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-20B KEYWDS TRANSPORT PROTEIN, ION-CHANNEL-ENGINEERING, PORIN EXPDTA X-RAY DIFFRACTION AUTHOR W.GROSSE,L.-O.ESSEN REVDAT 4 20-DEC-23 4CTD 1 REMARK SHEET REVDAT 3 09-AUG-17 4CTD 1 REMARK REVDAT 2 12-JUL-17 4CTD 1 REVDAT 1 13-AUG-14 4CTD 0 JRNL AUTH W.GROSSE,G.PSAKIS,B.MERTINS,P.REISS,D.WINDISCH,F.BRADEMANN, JRNL AUTH 2 J.BURCK,A.ULRICH,U.KOERT,L.ESSEN JRNL TITL STRUCTURE-BASED ENGINEERING OF A MINIMAL PORIN REVEALS LOOP- JRNL TITL 2 INDEPENDENT CHANNEL CLOSURE. JRNL REF BIOCHEMISTRY V. 53 4826 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24988371 JRNL DOI 10.1021/BI500660Q REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 10858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2145 - 5.0779 0.90 2577 125 0.2547 0.2626 REMARK 3 2 5.0779 - 4.0314 0.93 2600 135 0.2054 0.2712 REMARK 3 3 4.0314 - 3.5220 0.94 2652 137 0.2512 0.3265 REMARK 3 4 3.5220 - 3.2001 0.88 2500 132 0.2525 0.2975 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.60 REMARK 3 SHRINKAGE RADIUS : 0.27 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 25.29 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.82370 REMARK 3 B22 (A**2) : -17.50480 REMARK 3 B33 (A**2) : -30.80370 REMARK 3 B12 (A**2) : -1.33820 REMARK 3 B13 (A**2) : -2.27100 REMARK 3 B23 (A**2) : -2.45360 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4174 REMARK 3 ANGLE : 1.311 5337 REMARK 3 CHIRALITY : 0.092 527 REMARK 3 PLANARITY : 0.007 688 REMARK 3 DIHEDRAL : 19.193 1351 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 3:137) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5971 -12.7472 3.2958 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.1471 REMARK 3 T33: 0.2445 T12: -0.0078 REMARK 3 T13: 0.0505 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 1.3171 L22: 1.0463 REMARK 3 L33: 0.8881 L12: -0.0114 REMARK 3 L13: 0.1308 L23: 0.0944 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.0641 S13: 0.4435 REMARK 3 S21: 0.0742 S22: 0.0250 S23: 0.2993 REMARK 3 S31: -0.3257 S32: -0.0382 S33: -0.1624 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 138:160) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3624 -17.3963 6.7659 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: 0.1020 REMARK 3 T33: 0.4399 T12: 0.0351 REMARK 3 T13: -0.0280 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 0.3929 L22: 0.1134 REMARK 3 L33: 0.1740 L12: -0.0211 REMARK 3 L13: 0.1437 L23: -0.1034 REMARK 3 S TENSOR REMARK 3 S11: 0.0870 S12: -0.0193 S13: -0.1513 REMARK 3 S21: 0.0087 S22: 0.0566 S23: 0.1370 REMARK 3 S31: -0.0062 S32: -0.0701 S33: 0.7322 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 161:270) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2887 -26.9794 3.4926 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.0247 REMARK 3 T33: 0.1468 T12: 0.0353 REMARK 3 T13: -0.0602 T23: 0.1106 REMARK 3 L TENSOR REMARK 3 L11: 0.7608 L22: 1.3165 REMARK 3 L33: 0.9653 L12: -0.2995 REMARK 3 L13: -0.1489 L23: -0.4255 REMARK 3 S TENSOR REMARK 3 S11: 0.3131 S12: -0.0094 S13: -0.1872 REMARK 3 S21: -0.0021 S22: 0.1261 S23: 0.4658 REMARK 3 S31: -0.0004 S32: -0.0184 S33: 1.3937 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 3:137) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3072 4.1466 -2.2185 REMARK 3 T TENSOR REMARK 3 T11: -0.0750 T22: 0.0942 REMARK 3 T33: 0.2022 T12: -0.0916 REMARK 3 T13: 0.0291 T23: 0.1163 REMARK 3 L TENSOR REMARK 3 L11: 0.7455 L22: 0.4282 REMARK 3 L33: 0.4565 L12: 0.0615 REMARK 3 L13: -0.0587 L23: 0.1062 REMARK 3 S TENSOR REMARK 3 S11: 0.2210 S12: 0.0392 S13: 0.0840 REMARK 3 S21: -0.1676 S22: 0.1850 S23: -0.0041 REMARK 3 S31: 0.0279 S32: -0.2082 S33: 0.5231 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 138:160) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5673 -6.5041 -6.2274 REMARK 3 T TENSOR REMARK 3 T11: 0.3481 T22: 0.1526 REMARK 3 T33: 0.2494 T12: 0.0440 REMARK 3 T13: -0.0894 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 1.0967 L22: 0.8235 REMARK 3 L33: 0.5175 L12: 0.3017 REMARK 3 L13: -0.5975 L23: -0.2539 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: 0.2193 S13: 0.1342 REMARK 3 S21: -0.2266 S22: 0.2270 S23: 0.0390 REMARK 3 S31: -0.1531 S32: -0.1901 S33: 0.5477 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 161:270) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8360 -0.6212 -2.8919 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.0220 REMARK 3 T33: 0.2252 T12: 0.0516 REMARK 3 T13: -0.0400 T23: -0.1610 REMARK 3 L TENSOR REMARK 3 L11: 2.3055 L22: 1.3574 REMARK 3 L33: 0.5930 L12: 0.2632 REMARK 3 L13: -0.1220 L23: -0.3326 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.3859 S13: 0.3170 REMARK 3 S21: -0.2327 S22: 0.0259 S23: -0.0091 REMARK 3 S31: -0.0879 S32: -0.1026 S33: -0.0119 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 3:19 OR RESSEQ 27:55 REMARK 3 OR RESSEQ 64:99 OR RESSEQ 105:140 OR REMARK 3 RESSEQ 147:178 OR RESSEQ 184:214 OR REMARK 3 RESSEQ 221:232 OR RESSEQ 234:247 OR REMARK 3 RESSEQ 255:270) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 3:19 OR RESSEQ 27:55 REMARK 3 OR RESSEQ 64:99 OR RESSEQ 105:140 OR REMARK 3 RESSEQ 147:178 OR RESSEQ 184:214 OR REMARK 3 RESSEQ 221:232 OR RESSEQ 234:247 OR REMARK 3 RESSEQ 255:270) REMARK 3 ATOM PAIRS NUMBER : 1829 REMARK 3 RMSD : 0.038 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: COORDINATES WERE REFINED AGAINST DATA REMARK 3 SCALED BY DIFFRACTION ANISOTROPY SERVER, MBI UCLA, DA 39.82, DB - REMARK 3 15.04, DC -24.78 REMARK 4 REMARK 4 4CTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290050353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11053 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 44.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2WVP REMARK 200 REMARK 200 REMARK: DATA WERE SCALED BY DIFFRACTION ANISOTROPY SERVER, MBI REMARK 200 UCLA, DA 39.82, DB -15.04, DC -24.78, ENGINEERED W217A REMARK 200 SUBSTITUTION AND ENGINEERED DELETION OF S218 TO E229 AND C209Y REMARK 200 MUTATION WERE APPLIED TO 2WVP BEFORE USE IN MR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS/HCL, PH 8.5, 20% (V/V) REMARK 280 ETOH; 8 MG/ML OMPG IN 20 MM TRIS/HCL, PH 8.0, 250 MM NACL, 10% REMARK 280 (V/V) GLYCEROL, 0.4% (V/V) C8E4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 20 REMARK 465 GLY A 21 REMARK 465 TYR A 22 REMARK 465 GLY A 23 REMARK 465 GLU A 24 REMARK 465 ASP A 25 REMARK 465 MET A 26 REMARK 465 SER A 58 REMARK 465 ALA A 59 REMARK 465 GLY A 60 REMARK 465 LYS A 61 REMARK 465 ARG A 62 REMARK 465 GLY A 63 REMARK 465 GLU A 101 REMARK 465 PRO A 102 REMARK 465 GLY A 103 REMARK 465 LYS A 104 REMARK 465 ASN A 142 REMARK 465 THR A 143 REMARK 465 THR A 144 REMARK 465 GLY A 145 REMARK 465 TYR A 146 REMARK 465 MET A 179 REMARK 465 ASP A 180 REMARK 465 ASP A 181 REMARK 465 SER A 182 REMARK 465 ARG A 183 REMARK 465 ASP A 248 REMARK 465 HIS A 249 REMARK 465 ASP A 250 REMARK 465 GLU A 251 REMARK 465 GLY A 252 REMARK 465 ASP A 253 REMARK 465 SER A 254 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 GLU B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 20 REMARK 465 GLY B 21 REMARK 465 TYR B 22 REMARK 465 GLY B 23 REMARK 465 GLU B 24 REMARK 465 ASP B 25 REMARK 465 MET B 26 REMARK 465 ASP B 56 REMARK 465 TYR B 57 REMARK 465 SER B 58 REMARK 465 ALA B 59 REMARK 465 GLY B 60 REMARK 465 LYS B 61 REMARK 465 ARG B 62 REMARK 465 GLY B 63 REMARK 465 ASP B 100 REMARK 465 GLU B 101 REMARK 465 PRO B 102 REMARK 465 GLY B 103 REMARK 465 LYS B 104 REMARK 465 ASN B 142 REMARK 465 THR B 143 REMARK 465 THR B 144 REMARK 465 GLY B 145 REMARK 465 TYR B 146 REMARK 465 MET B 179 REMARK 465 ASP B 180 REMARK 465 ASP B 181 REMARK 465 SER B 182 REMARK 465 ARG B 183 REMARK 465 ASP B 248 REMARK 465 HIS B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 GLY B 252 REMARK 465 ASP B 253 REMARK 465 SER B 254 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 57 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 105 CG OD1 OD2 REMARK 470 ASP A 140 CG OD1 OD2 REMARK 470 LEU A 141 CG CD1 CD2 REMARK 470 ASN A 178 CG OD1 ND2 REMARK 470 ASN A 184 CG OD1 ND2 REMARK 470 ASN A 185 CG OD1 ND2 REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 PHE A 188 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 215 CG OD1 OD2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 219 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 3 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 105 CG OD1 OD2 REMARK 470 ASP B 140 CG OD1 OD2 REMARK 470 LEU B 141 CG CD1 CD2 REMARK 470 ASN B 178 CG OD1 ND2 REMARK 470 ASN B 184 CG OD1 ND2 REMARK 470 ASN B 185 CG OD1 ND2 REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 PHE B 188 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 215 CG OD1 OD2 REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 219 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 255 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 217 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 18 -169.89 -128.83 REMARK 500 LEU A 122 -64.02 -95.53 REMARK 500 ASN A 139 -179.30 -68.17 REMARK 500 ASP A 140 -139.20 52.50 REMARK 500 ASP A 148 73.82 44.97 REMARK 500 LEU A 214 -85.27 -83.39 REMARK 500 ARG A 216 -80.11 -127.02 REMARK 500 GLN A 233 -4.63 78.60 REMARK 500 HIS A 269 -76.33 -104.89 REMARK 500 LEU B 122 -64.01 -95.65 REMARK 500 ASN B 139 -178.32 -67.77 REMARK 500 ASP B 140 -136.68 51.71 REMARK 500 ASP B 148 74.80 44.30 REMARK 500 LEU B 214 -165.15 -76.52 REMARK 500 ALA B 217 0.62 84.31 REMARK 500 GLN B 233 -12.50 79.24 REMARK 500 HIS B 269 -76.61 -104.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 55 ASP A 56 141.54 REMARK 500 ASP A 215 ARG A 216 144.89 REMARK 500 ARG A 216 ALA A 217 145.55 REMARK 500 ALA A 217 GLY A 218 -137.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E B 1276 REMARK 610 C8E B 1277 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 14-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 15-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 14-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 15-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1275 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1275 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E B 1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E B 1277 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1277 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ENGINEERED W217A SUBSTITUTION, ENGINEERED DELETION OF 218- REMARK 999 229 (S, N, W, D, W, Q, D, D, I, E, R, E), C-TERMINAL HIS- REMARK 999 TAG DBREF 4CTD A 1 268 UNP P76045 OMPG_ECOLI 22 301 DBREF 4CTD B 1 268 UNP P76045 OMPG_ECOLI 22 301 SEQADV 4CTD ALA A 217 UNP P76045 TRP 238 ENGINEERED MUTATION SEQADV 4CTD A UNP P76045 SER 239 DELETION SEQADV 4CTD A UNP P76045 ASN 240 DELETION SEQADV 4CTD A UNP P76045 TRP 241 DELETION SEQADV 4CTD A UNP P76045 ASP 242 DELETION SEQADV 4CTD A UNP P76045 TRP 243 DELETION SEQADV 4CTD A UNP P76045 GLN 244 DELETION SEQADV 4CTD A UNP P76045 ASP 245 DELETION SEQADV 4CTD A UNP P76045 ASP 246 DELETION SEQADV 4CTD A UNP P76045 ILE 247 DELETION SEQADV 4CTD A UNP P76045 GLU 248 DELETION SEQADV 4CTD A UNP P76045 ARG 249 DELETION SEQADV 4CTD A UNP P76045 GLU 250 DELETION SEQADV 4CTD HIS A 269 UNP P76045 EXPRESSION TAG SEQADV 4CTD HIS A 270 UNP P76045 EXPRESSION TAG SEQADV 4CTD HIS A 271 UNP P76045 EXPRESSION TAG SEQADV 4CTD HIS A 272 UNP P76045 EXPRESSION TAG SEQADV 4CTD HIS A 273 UNP P76045 EXPRESSION TAG SEQADV 4CTD HIS A 274 UNP P76045 EXPRESSION TAG SEQADV 4CTD ALA B 217 UNP P76045 TRP 238 ENGINEERED MUTATION SEQADV 4CTD B UNP P76045 SER 239 DELETION SEQADV 4CTD B UNP P76045 ASN 240 DELETION SEQADV 4CTD B UNP P76045 TRP 241 DELETION SEQADV 4CTD B UNP P76045 ASP 242 DELETION SEQADV 4CTD B UNP P76045 TRP 243 DELETION SEQADV 4CTD B UNP P76045 GLN 244 DELETION SEQADV 4CTD B UNP P76045 ASP 245 DELETION SEQADV 4CTD B UNP P76045 ASP 246 DELETION SEQADV 4CTD B UNP P76045 ILE 247 DELETION SEQADV 4CTD B UNP P76045 GLU 248 DELETION SEQADV 4CTD B UNP P76045 ARG 249 DELETION SEQADV 4CTD B UNP P76045 GLU 250 DELETION SEQADV 4CTD HIS B 269 UNP P76045 EXPRESSION TAG SEQADV 4CTD HIS B 270 UNP P76045 EXPRESSION TAG SEQADV 4CTD HIS B 271 UNP P76045 EXPRESSION TAG SEQADV 4CTD HIS B 272 UNP P76045 EXPRESSION TAG SEQADV 4CTD HIS B 273 UNP P76045 EXPRESSION TAG SEQADV 4CTD HIS B 274 UNP P76045 EXPRESSION TAG SEQRES 1 A 274 GLU GLU ARG ASN ASP TRP HIS PHE ASN ILE GLY ALA MET SEQRES 2 A 274 TYR GLU ILE GLU ASN VAL GLU GLY TYR GLY GLU ASP MET SEQRES 3 A 274 ASP GLY LEU ALA GLU PRO SER VAL TYR PHE ASN ALA ALA SEQRES 4 A 274 ASN GLY PRO TRP ARG ILE ALA LEU ALA TYR TYR GLN GLU SEQRES 5 A 274 GLY PRO VAL ASP TYR SER ALA GLY LYS ARG GLY THR TRP SEQRES 6 A 274 PHE ASP ARG PRO GLU LEU GLU VAL HIS TYR GLN PHE LEU SEQRES 7 A 274 GLU ASN ASP ASP PHE SER PHE GLY LEU THR GLY GLY PHE SEQRES 8 A 274 ARG ASN TYR GLY TYR HIS TYR VAL ASP GLU PRO GLY LYS SEQRES 9 A 274 ASP THR ALA ASN MET GLN ARG TRP LYS ILE ALA PRO ASP SEQRES 10 A 274 TRP ASP VAL LYS LEU THR ASP ASP LEU ARG PHE ASN GLY SEQRES 11 A 274 TRP LEU SER MET TYR LYS PHE ALA ASN ASP LEU ASN THR SEQRES 12 A 274 THR GLY TYR ALA ASP THR ARG VAL GLU THR GLU THR GLY SEQRES 13 A 274 LEU GLN TYR THR PHE ASN GLU THR VAL ALA LEU ARG VAL SEQRES 14 A 274 ASN TYR TYR LEU GLU ARG GLY PHE ASN MET ASP ASP SER SEQRES 15 A 274 ARG ASN ASN GLY GLU PHE SER THR GLN GLU ILE ARG ALA SEQRES 16 A 274 TYR LEU PRO LEU THR LEU GLY ASN HIS SER VAL THR PRO SEQRES 17 A 274 TYR THR ARG ILE GLY LEU ASP ARG ALA GLY HIS ASP PHE SEQRES 18 A 274 ASN ARG VAL GLY LEU PHE TYR GLY TYR ASP PHE GLN ASN SEQRES 19 A 274 GLY LEU SER VAL SER LEU GLU TYR ALA PHE GLU TRP GLN SEQRES 20 A 274 ASP HIS ASP GLU GLY ASP SER ASP LYS PHE HIS TYR ALA SEQRES 21 A 274 GLY VAL GLY VAL ASN TYR SER PHE HIS HIS HIS HIS HIS SEQRES 22 A 274 HIS SEQRES 1 B 274 GLU GLU ARG ASN ASP TRP HIS PHE ASN ILE GLY ALA MET SEQRES 2 B 274 TYR GLU ILE GLU ASN VAL GLU GLY TYR GLY GLU ASP MET SEQRES 3 B 274 ASP GLY LEU ALA GLU PRO SER VAL TYR PHE ASN ALA ALA SEQRES 4 B 274 ASN GLY PRO TRP ARG ILE ALA LEU ALA TYR TYR GLN GLU SEQRES 5 B 274 GLY PRO VAL ASP TYR SER ALA GLY LYS ARG GLY THR TRP SEQRES 6 B 274 PHE ASP ARG PRO GLU LEU GLU VAL HIS TYR GLN PHE LEU SEQRES 7 B 274 GLU ASN ASP ASP PHE SER PHE GLY LEU THR GLY GLY PHE SEQRES 8 B 274 ARG ASN TYR GLY TYR HIS TYR VAL ASP GLU PRO GLY LYS SEQRES 9 B 274 ASP THR ALA ASN MET GLN ARG TRP LYS ILE ALA PRO ASP SEQRES 10 B 274 TRP ASP VAL LYS LEU THR ASP ASP LEU ARG PHE ASN GLY SEQRES 11 B 274 TRP LEU SER MET TYR LYS PHE ALA ASN ASP LEU ASN THR SEQRES 12 B 274 THR GLY TYR ALA ASP THR ARG VAL GLU THR GLU THR GLY SEQRES 13 B 274 LEU GLN TYR THR PHE ASN GLU THR VAL ALA LEU ARG VAL SEQRES 14 B 274 ASN TYR TYR LEU GLU ARG GLY PHE ASN MET ASP ASP SER SEQRES 15 B 274 ARG ASN ASN GLY GLU PHE SER THR GLN GLU ILE ARG ALA SEQRES 16 B 274 TYR LEU PRO LEU THR LEU GLY ASN HIS SER VAL THR PRO SEQRES 17 B 274 TYR THR ARG ILE GLY LEU ASP ARG ALA GLY HIS ASP PHE SEQRES 18 B 274 ASN ARG VAL GLY LEU PHE TYR GLY TYR ASP PHE GLN ASN SEQRES 19 B 274 GLY LEU SER VAL SER LEU GLU TYR ALA PHE GLU TRP GLN SEQRES 20 B 274 ASP HIS ASP GLU GLY ASP SER ASP LYS PHE HIS TYR ALA SEQRES 21 B 274 GLY VAL GLY VAL ASN TYR SER PHE HIS HIS HIS HIS HIS SEQRES 22 B 274 HIS HET CL A1271 1 HET CL A1272 1 HET CL A1273 1 HET CL A1274 1 HET CL A1275 1 HET C8E A1276 21 HET C8E A1277 21 HET CL A1280 1 HET CL A1281 1 HET CL B1271 1 HET CL B1272 1 HET CL B1273 1 HET CL B1274 1 HET CL B1275 1 HET C8E B1276 12 HET C8E B1277 8 HETNAM CL CHLORIDE ION HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE FORMUL 3 CL 12(CL 1-) FORMUL 8 C8E 4(C16 H34 O5) SHEET 1 AA15 TRP A 6 ASN A 18 0 SHEET 2 AA15 LEU A 29 ASN A 40 -1 O LEU A 29 N GLU A 17 SHEET 3 AA15 TRP A 43 PRO A 54 -1 O TRP A 43 N ASN A 40 SHEET 4 AA15 TRP A 65 ASN A 80 -1 O PHE A 66 N GLU A 52 SHEET 5 AA15 PHE A 83 HIS A 97 -1 O PHE A 83 N ASN A 80 SHEET 6 AA15 ASN A 108 LYS A 121 -1 O MET A 109 N TYR A 94 SHEET 7 AA15 ARG A 127 PHE A 137 -1 O PHE A 128 N VAL A 120 SHEET 8 AA15 THR A 149 THR A 160 -1 O ARG A 150 N TYR A 135 SHEET 9 AA15 ALA A 166 GLY A 176 -1 O LEU A 167 N TYR A 159 SHEET 10 AA15 SER A 189 TYR A 196 -1 O THR A 190 N GLU A 174 SHEET 11 AA15 HIS A 204 GLY A 213 -1 O THR A 210 N ALA A 195 SHEET 12 AA15 PHE A 221 ASP A 231 -1 O PHE A 221 N GLY A 213 SHEET 13 AA15 LEU A 236 TRP A 246 -1 O VAL A 238 N TYR A 230 SHEET 14 AA15 PHE A 257 PHE A 268 -1 O PHE A 257 N GLU A 245 SHEET 15 AA15 TRP A 6 ASN A 18 1 O TRP A 6 N PHE A 8 SHEET 1 BA15 TRP B 6 ASN B 18 0 SHEET 2 BA15 LEU B 29 ASN B 40 -1 O LEU B 29 N GLU B 17 SHEET 3 BA15 TRP B 43 PRO B 54 -1 O TRP B 43 N ASN B 40 SHEET 4 BA15 TRP B 65 ASN B 80 -1 O PHE B 66 N GLU B 52 SHEET 5 BA15 PHE B 83 HIS B 97 -1 O PHE B 83 N ASN B 80 SHEET 6 BA15 ASN B 108 LYS B 121 -1 O MET B 109 N TYR B 94 SHEET 7 BA15 ARG B 127 PHE B 137 -1 O PHE B 128 N VAL B 120 SHEET 8 BA15 THR B 149 THR B 160 -1 O ARG B 150 N TYR B 135 SHEET 9 BA15 ALA B 166 GLY B 176 -1 O LEU B 167 N TYR B 159 SHEET 10 BA15 SER B 189 TYR B 196 -1 O THR B 190 N GLU B 174 SHEET 11 BA15 HIS B 204 GLY B 213 -1 O THR B 210 N ALA B 195 SHEET 12 BA15 PHE B 221 ASP B 231 -1 O PHE B 221 N GLY B 213 SHEET 13 BA15 LEU B 236 TRP B 246 -1 O VAL B 238 N TYR B 230 SHEET 14 BA15 PHE B 257 PHE B 268 -1 O PHE B 257 N GLU B 245 SHEET 15 BA15 TRP B 6 ASN B 18 1 O TRP B 6 N PHE B 8 SITE 1 AC1 1 ARG A 92 SITE 1 AC2 1 ARG A 211 SITE 1 AC3 3 SER A 239 GLU A 241 TYR A 259 SITE 1 AC4 1 THR B 210 SITE 1 AC5 1 THR B 164 SITE 1 AC6 1 MET A 13 SITE 1 AC7 1 ARG B 211 SITE 1 AC8 1 THR A 210 SITE 1 AC9 2 ARG A 168 ASN A 170 SITE 1 BC1 3 GLU B 154 ARG B 168 ASN B 170 SITE 1 BC2 2 ILE A 193 TYR B 266 SITE 1 BC3 9 TRP A 6 PHE A 8 PHE A 36 ALA A 38 SITE 2 BC3 9 ILE A 45 LEU A 47 PHE B 244 LYS B 256 SITE 3 BC3 9 HIS B 258 SITE 1 BC4 3 PRO A 116 PRO B 116 LEU B 132 SITE 1 BC5 6 ASN A 234 LEU A 236 VAL A 264 LEU B 167 SITE 2 BC5 6 VAL B 169 LEU B 214 CRYST1 59.940 60.060 59.760 70.45 95.24 70.58 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016683 -0.005882 0.004141 0.00000 SCALE2 0.000000 0.017654 -0.007447 0.00000 SCALE3 0.000000 0.000000 0.018237 0.00000 MTRIX1 1 -0.335010 -0.942210 -0.004130 -0.67539 1 MTRIX2 1 -0.942210 0.334990 0.004930 -0.35593 1 MTRIX3 1 -0.003260 0.005540 -0.999980 0.62469 1