PDB Short entry for 4CVA HEADER TRANSFERASE 24-MAR-14 4CVA TITLE MPS1 KINASE WITH 3-AMINOPYRIDIN-2-ONE INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 519-808; COMPND 5 SYNONYM: MONOPOLAR SPINDLE KINASE 1, PHOSPHOTYROSINE PICKED COMPND 6 THREONINE-PROTEIN KINASE, PYT; COMPND 7 EC: 2.7.12.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI KEYWDS TRANSFERASE, FRAGMENT, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR D.FEARON,V.BAVETSIAS,R.BAYLISS,J.SCHMITT,I.M.WESTWOOD, AUTHOR 2 R.L.M.VANMONTFORT,K.JONES REVDAT 1 08-APR-15 4CVA 0 JRNL AUTH D.FEARON,V.BAVETSIAS,R.BAYLISS,J.SCHMITT,I.M.WESTWOOD, JRNL AUTH 2 R.L.M.VAN MONTFORT,K.JONES JRNL TITL PROTEIN KINASE SELECTIVITY OF A 3-AMINOPYRIDIN-2- ONE BASED JRNL TITL 2 FRAGMENT LIBRARY, IDENTIFICATION OF 3- JRNL TITL 3 AMINO-5-(PYRIDIN-4-YL)PYRIDIN-2(1H)-ONE AS A NOVEL SCAFFOLD JRNL TITL 4 FOR MPS1 INHIBITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,WOMACK; REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.82 REMARK 3 NUMBER OF REFLECTIONS : 15108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.1909 REMARK 3 R VALUE (WORKING SET) : 0.1897 REMARK 3 FREE R VALUE : 0.2150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.03 REMARK 3 FREE R VALUE TEST SET COUNT : 760 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2699 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2354 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2557 REMARK 3 BIN R VALUE (WORKING SET) : 0.2322 REMARK 3 BIN FREE R VALUE : 0.2953 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.26 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 142 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1952 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.2546 REMARK 3 B22 (A**2) : -0.0730 REMARK 3 B33 (A**2) : -2.1816 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.365 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.253 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.194 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.255 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.197 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.9514 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.9355 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2049 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 2782 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 677 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 45 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 316 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2049 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 277 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2327 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.70 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.84 REMARK 3 REMARK 3 TLS DETAILS. REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 516 - 561 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9533 -23.7816 -48.7018 REMARK 3 T TENSOR REMARK 3 T11: -0.2894 T22: 0.3040 REMARK 3 T33: -0.3040 T12: 0.0684 REMARK 3 T13: -0.0084 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 7.9344 L22: 3.4451 REMARK 3 L33: 8.3155 L12: -1.0739 REMARK 3 L13: 2.8847 L23: -1.5658 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.2258 S13: 0.1303 REMARK 3 S21: -0.0741 S22: -0.0530 S23: -0.3172 REMARK 3 S31: -0.0862 S32: 0.3585 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 562 - 662 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2583 -22.2728 -37.1552 REMARK 3 T TENSOR REMARK 3 T11: -0.2829 T22: 0.2613 REMARK 3 T33: -0.2901 T12: -0.0112 REMARK 3 T13: -0.0038 T23: 0.0611 REMARK 3 L TENSOR REMARK 3 L11: 4.9925 L22: 1.4569 REMARK 3 L33: 3.5209 L12: -1.6218 REMARK 3 L13: -1.3186 L23: 0.3896 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: 0.3974 S13: 0.1023 REMARK 3 S21: -0.0497 S22: -0.0515 S23: 0.1446 REMARK 3 S31: -0.0321 S32: -0.1984 S33: 0.0035 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 663 - 794 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0217 -8.8349 -28.1189 REMARK 3 T TENSOR REMARK 3 T11: -0.3003 T22: 0.2400 REMARK 3 T33: -0.0840 T12: 0.0814 REMARK 3 T13: 0.1371 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 0.6131 L22: 2.6110 REMARK 3 L33: 2.8774 L12: 0.0084 REMARK 3 L13: 0.1486 L23: -0.6450 REMARK 3 S TENSOR REMARK 3 S11: 0.2830 S12: 0.1536 S13: 0.5442 REMARK 3 S21: 0.1334 S22: -0.0897 S23: 0.1634 REMARK 3 S31: -0.5442 S32: -0.4241 S33: -0.1933 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4CVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-14. REMARK 100 THE PDBE ID CODE IS EBI-60115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15117 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.50 REMARK 200 RESOLUTION RANGE LOW (A) : 40.72 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.4 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.5 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZMC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.9 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACO2H, 0.1M BTP PH 7.5, REMARK 280 15% W/V PEG3350, 1% DMSO AND 1MM REMARK 280 (N-(2-OXO-5-(PYRIDIN-4-YL)-1, REMARK 280 2-DIHYDROPYRIDIN-3-YL)-4-PIPERIDIN-1-YL)BENZAMIDE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.23000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.58000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.37500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.23000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.58000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.37500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.23000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.58000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.37500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.23000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.58000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.37500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2003 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 SER A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 VAL A 506 REMARK 465 ASP A 507 REMARK 465 LEU A 508 REMARK 465 GLY A 509 REMARK 465 THR A 510 REMARK 465 GLU A 511 REMARK 465 ASN A 512 REMARK 465 LEU A 513 REMARK 465 TYR A 514 REMARK 465 GLN A 670 REMARK 465 MET A 671 REMARK 465 GLN A 672 REMARK 465 PRO A 673 REMARK 465 ASP A 674 REMARK 465 THR A 675 REMARK 465 THR A 676 REMARK 465 SER A 677 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 LYS A 680 REMARK 465 ASP A 681 REMARK 465 SER A 682 REMARK 465 GLN A 683 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 LYS A 708 REMARK 465 SER A 709 REMARK 465 THR A 795 REMARK 465 HIS A 796 REMARK 465 PRO A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLN A 800 REMARK 465 MET A 801 REMARK 465 ALA A 802 REMARK 465 LYS A 803 REMARK 465 GLY A 804 REMARK 465 THR A 805 REMARK 465 THR A 806 REMARK 465 GLU A 807 REMARK 465 GLU A 808 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 515 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 516 CG CD OE1 NE2 REMARK 470 SER A 533 OG REMARK 470 SER A 536 OG REMARK 470 LYS A 538 CE NZ REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 LYS A 547 CD CE NZ REMARK 470 GLU A 558 CG CD OE1 OE2 REMARK 470 GLU A 559 CG CD OE1 OE2 REMARK 470 GLN A 563 CG CD OE1 NE2 REMARK 470 GLN A 580 CG CD OE1 NE2 REMARK 470 LYS A 614 CG CD CE NZ REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 LYS A 616 CE NZ REMARK 470 LYS A 617 CG CD CE NZ REMARK 470 TRP A 622 CG CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 470 TRP A 622 CH2 REMARK 470 GLU A 623 CG CD OE1 OE2 REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 VAL A 684 CG1 CG2 REMARK 470 LYS A 696 CG CD CE NZ REMARK 470 ASP A 697 CG OD1 OD2 REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 LYS A 731 CE NZ REMARK 470 GLN A 736 CD OE1 NE2 REMARK 470 ILE A 738 CG1 CG2 CD1 REMARK 470 ILE A 741 CG1 CG2 CD1 REMARK 470 ILE A 748 CG1 CG2 CD1 REMARK 470 GLU A 753 CG CD OE1 OE2 REMARK 470 GLU A 755 CG CD OE1 OE2 REMARK 470 LYS A 762 CG CD CE NZ REMARK 470 LYS A 769 CE NZ REMARK 470 LYS A 773 CD CE NZ REMARK 470 LYS A 777 CG CD CE NZ REMARK 470 GLN A 778 CG CD OE1 NE2 REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 531 -66.58 -97.99 REMARK 500 THR A 594 -166.55 -116.07 REMARK 500 ASP A 647 46.60 -145.63 REMARK 500 ASP A 657 67.25 60.47 REMARK 500 ASN A 739 106.17 -59.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WBI A1795 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A1797 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1798 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1799 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CV8 RELATED DB: PDB REMARK 900 MPS1 KINASE WITH 3-AMINOPYRIDIN-2-ONE INHIBITORS REMARK 900 RELATED ID: 4CV9 RELATED DB: PDB REMARK 900 MPS1 KINASE WITH 3-AMINOPYRIDIN-2-ONE INHIBITORS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE INCLUDING HEXAHISTIDINE TAG IS AS DESCRIBED REMARK 999 IN NAT. CHEM. BIOL. 2010, 6, 259-368. DBREF 4CVA A 519 808 UNP P33981 TTK_HUMAN 519 808 SEQADV 4CVA MET A 496 UNP P33981 EXPRESSION TAG SEQADV 4CVA HIS A 497 UNP P33981 EXPRESSION TAG SEQADV 4CVA HIS A 498 UNP P33981 EXPRESSION TAG SEQADV 4CVA HIS A 499 UNP P33981 EXPRESSION TAG SEQADV 4CVA HIS A 500 UNP P33981 EXPRESSION TAG SEQADV 4CVA HIS A 501 UNP P33981 EXPRESSION TAG SEQADV 4CVA HIS A 502 UNP P33981 EXPRESSION TAG SEQADV 4CVA SER A 503 UNP P33981 EXPRESSION TAG SEQADV 4CVA SER A 504 UNP P33981 EXPRESSION TAG SEQADV 4CVA GLY A 505 UNP P33981 EXPRESSION TAG SEQADV 4CVA VAL A 506 UNP P33981 EXPRESSION TAG SEQADV 4CVA ASP A 507 UNP P33981 EXPRESSION TAG SEQADV 4CVA LEU A 508 UNP P33981 EXPRESSION TAG SEQADV 4CVA GLY A 509 UNP P33981 EXPRESSION TAG SEQADV 4CVA THR A 510 UNP P33981 EXPRESSION TAG SEQADV 4CVA GLU A 511 UNP P33981 EXPRESSION TAG SEQADV 4CVA ASN A 512 UNP P33981 EXPRESSION TAG SEQADV 4CVA LEU A 513 UNP P33981 EXPRESSION TAG SEQADV 4CVA TYR A 514 UNP P33981 EXPRESSION TAG SEQADV 4CVA PHE A 515 UNP P33981 EXPRESSION TAG SEQADV 4CVA GLN A 516 UNP P33981 EXPRESSION TAG SEQADV 4CVA SER A 517 UNP P33981 EXPRESSION TAG SEQADV 4CVA MET A 518 UNP P33981 EXPRESSION TAG SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS SEQRES 3 A 313 GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SER GLY SEQRES 4 A 313 GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU LYS LYS SEQRES 5 A 313 GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU GLU ALA SEQRES 6 A 313 ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU ILE ALA SEQRES 7 A 313 TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS ILE ILE SEQRES 8 A 313 ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR ILE TYR SEQRES 9 A 313 MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SER TRP SEQRES 10 A 313 LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU ARG LYS SEQRES 11 A 313 SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS THR ILE SEQRES 12 A 313 HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS PRO ALA SEQRES 13 A 313 ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU ILE ASP SEQRES 14 A 313 PHE GLY ILE ALA ASN GLN MET GLN PRO ASP THR THR SER SEQRES 15 A 313 VAL VAL LYS ASP SER GLN VAL GLY TPO VAL ASN TYR MET SEQRES 16 A 313 PRO PRO GLU ALA ILE LYS ASP MET SER SER SER ARG GLU SEQRES 17 A 313 ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SER ASP SEQRES 18 A 313 VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET THR TYR SEQRES 19 A 313 GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN ILE SER SEQRES 20 A 313 LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU ILE GLU SEQRES 21 A 313 PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP VAL LEU SEQRES 22 A 313 LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG ILE SER SEQRES 23 A 313 ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN ILE GLN SEQRES 24 A 313 THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR THR GLU SEQRES 25 A 313 GLU MODRES 4CVA TPO A 686 THR PHOSPHOTHREONINE HET TPO A 686 11 HET WBI A1795 28 HET DMS A1796 4 HET DMS A1797 4 HET EDO A1798 4 HET EDO A1799 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM WBI N-(6-OXO-1,6-DIHYDRO-3,4'-BIPYRIDIN-5-YL)-4- HETNAM 2 WBI (PIPERIDIN-1-YL)BENZAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETNAM TPO PHOSPHOTHREONINE HETSYN EDO ETHYLENE GLYCOL HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 EDO 2(C2 H6 O2) FORMUL 3 WBI C22 H22 N4 O2 FORMUL 4 DMS 2(C2 H6 O S) FORMUL 5 TPO C4 H10 N O6 P FORMUL 6 HOH *28(H2 O) HELIX 1 1 ASP A 561 GLN A 579 1 19 HELIX 2 2 GLN A 580 SER A 582 5 3 HELIX 3 3 LEU A 609 LYS A 616 1 8 HELIX 4 4 ASP A 620 HIS A 641 1 22 HELIX 5 5 LYS A 649 ALA A 651 5 3 HELIX 6 6 PRO A 691 ASP A 697 1 7 HELIX 7 7 SER A 712 GLY A 730 1 19 HELIX 8 8 ASN A 739 ASP A 749 1 11 HELIX 9 9 GLU A 761 LEU A 772 1 12 HELIX 10 10 SER A 781 ALA A 787 1 7 HELIX 11 11 HIS A 788 ILE A 793 1 6 SHEET 1 AA 6 SER A 517 VAL A 520 0 SHEET 2 AA 6 ARG A 523 GLN A 530 -1 O ARG A 523 N VAL A 520 SHEET 3 AA 6 SER A 537 LEU A 543 -1 O GLN A 541 N LEU A 528 SHEET 4 AA 6 ILE A 549 ASN A 556 -1 O TYR A 550 N VAL A 542 SHEET 5 AA 6 TYR A 597 MET A 602 -1 O ILE A 598 N VAL A 555 SHEET 6 AA 6 LEU A 588 ILE A 593 -1 N TYR A 589 O VAL A 601 SHEET 1 AB 3 ILE A 607 ASP A 608 0 SHEET 2 AB 3 PHE A 653 ILE A 655 -1 N ILE A 655 O ILE A 607 SHEET 3 AB 3 LEU A 660 LEU A 662 -1 O LYS A 661 N LEU A 654 LINK C GLY A 685 N TPO A 686 1555 1555 1.34 LINK C TPO A 686 N VAL A 687 1555 1555 1.34 SITE 1 AC1 10 ILE A 531 ALA A 551 LYS A 553 MET A 602 SITE 2 AC1 10 GLU A 603 CYS A 604 GLY A 605 ASN A 606 SITE 3 AC1 10 ASP A 608 LEU A 654 SITE 1 AC2 2 TYR A 525 TYR A 550 SITE 1 AC3 4 ILE A 549 TYR A 589 GLU A 603 CYS A 604 SITE 1 AC4 5 TYR A 574 LYS A 577 HIS A 641 ILE A 793 SITE 2 AC4 5 GLN A 794 CRYST1 70.460 107.160 112.750 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014192 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008869 0.00000