PDB Short entry for 4D0G HEADER HYDROLASE 25-APR-14 4D0G TITLE STRUCTURE OF RAB14 IN COMPLEX WITH RAB-COUPLING PROTEIN (RCP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-14; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 8-180; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAB11 FAMILY-INTERACTING PROTEIN 1; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: RESIDUES 582-649; COMPND 11 SYNONYM: RAB11-FIP1, RAB-COUPLING PROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS HYDROLASE, RAB14 GTPASE, ENDOSOMAL TRAFFICKING, RAB- BINDING DOMAIN KEYWDS 2 (RBD), EFFECTOR RECRUITMENT EXPDTA X-RAY DIFFRACTION AUTHOR P.LALL,A.R.KHAN REVDAT 5 20-DEC-23 4D0G 1 REMARK LINK REVDAT 4 05-AUG-15 4D0G 1 JRNL REVDAT 3 17-JUN-15 4D0G 1 REVDAT JRNL REVDAT 2 10-JUN-15 4D0G 1 JRNL REVDAT 1 20-MAY-15 4D0G 0 JRNL AUTH P.LALL,A.J.LINDSAY,S.HANSCOM,T.KECMAN,E.S.TAGLAUER, JRNL AUTH 2 U.M.MCVEIGH,E.FRANKLIN,M.W.MCCAFFREY,A.R.KHAN JRNL TITL STRUCTURE-FUNCTION ANALYSES OF THE INTERACTIONS BETWEEN JRNL TITL 2 RAB11 AND RAB14 SMALL GTPASES WITH THEIR SHARED EFFECTOR RAB JRNL TITL 3 COUPLING PROTEIN (RCP). JRNL REF J.BIOL.CHEM. V. 290 18817 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26032412 JRNL DOI 10.1074/JBC.M114.612366 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 8711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.564 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.342 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.276 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.069 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1726 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1662 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2346 ; 1.302 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3803 ; 0.764 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1937 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 397 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 852 ; 2.092 ; 4.251 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 851 ; 2.083 ; 4.246 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1062 ; 3.393 ; 6.364 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 874 ; 2.304 ; 4.453 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): -28.8750 -18.6420 5.3810 REMARK 3 T TENSOR REMARK 3 T11: 0.1731 T22: 0.0369 REMARK 3 T33: 0.0612 T12: 0.0668 REMARK 3 T13: -0.0512 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 2.8040 L22: 4.5529 REMARK 3 L33: 2.6481 L12: -1.2856 REMARK 3 L13: 0.3896 L23: -1.3767 REMARK 3 S TENSOR REMARK 3 S11: -0.1560 S12: -0.1030 S13: 0.0308 REMARK 3 S21: 0.2705 S22: 0.2472 S23: -0.3251 REMARK 3 S31: 0.1292 S32: 0.1012 S33: -0.0912 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 595 C 640 REMARK 3 ORIGIN FOR THE GROUP (A): -46.3400 -29.4390 -10.9770 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0197 REMARK 3 T33: 0.1056 T12: 0.0116 REMARK 3 T13: 0.0257 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.2297 L22: 13.3787 REMARK 3 L33: 2.5552 L12: 1.9941 REMARK 3 L13: 0.7558 L23: 2.4053 REMARK 3 S TENSOR REMARK 3 S11: -0.2639 S12: 0.0052 S13: -0.1970 REMARK 3 S21: -0.5639 S22: 0.1505 S23: 0.2595 REMARK 3 S31: 0.0281 S32: 0.0281 S33: 0.1135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. N- AND C-TERMINI ARE REMARK 3 DISORDERED, AND SEVERAL SIDE-CHAINS ARE MODELED ALANINE DUE TO A REMARK 3 LACK OF ELECTRON DENSITY. REMARK 4 REMARK 4 4D0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4DRZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 8000, 0.1 M HEPES PH 6.75 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.40400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 19.40400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.93500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.11400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.93500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.11400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.40400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.93500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.11400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 19.40400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.93500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.11400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 ASN A 175 REMARK 465 ILE A 176 REMARK 465 GLN A 177 REMARK 465 ASP A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 MET C 581 REMARK 465 SER C 582 REMARK 465 ASP C 583 REMARK 465 PRO C 584 REMARK 465 ALA C 585 REMARK 465 PHE C 586 REMARK 465 ALA C 587 REMARK 465 TYR C 588 REMARK 465 ALA C 589 REMARK 465 GLN C 590 REMARK 465 LEU C 591 REMARK 465 THR C 592 REMARK 465 HIS C 593 REMARK 465 ASP C 594 REMARK 465 GLN C 641 REMARK 465 VAL C 642 REMARK 465 GLY C 643 REMARK 465 LYS C 644 REMARK 465 LYS C 645 REMARK 465 ALA C 646 REMARK 465 GLY C 647 REMARK 465 LYS C 648 REMARK 465 MET C 649 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 8 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 9 OG REMARK 470 TYR A 10 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 MET A 37 CG SD CE REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LEU A 166 CG CD1 CD2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 470 LEU C 601 CG CD1 CD2 REMARK 470 LYS C 604 CG CD CE NZ REMARK 470 GLU C 605 CG CD OE1 OE2 REMARK 470 ARG C 615 CG CD NE CZ NH1 NH2 REMARK 470 THR C 640 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 33 25.55 -150.71 REMARK 500 LYS A 34 46.81 15.98 REMARK 500 ALA A 38 -81.40 -140.14 REMARK 500 ASP A 39 78.07 -64.84 REMARK 500 PRO A 41 44.04 -99.32 REMARK 500 HIS A 42 126.53 66.75 REMARK 500 SER A 56 52.87 36.55 REMARK 500 LEU A 70 -89.62 9.20 REMARK 500 GLU A 71 -66.85 58.47 REMARK 500 LYS A 125 31.47 79.57 REMARK 500 TYR A 173 -173.17 140.87 REMARK 500 LEU C 596 87.40 -161.34 REMARK 500 THR C 632 73.29 -157.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 37 ALA A 38 -53.30 REMARK 500 ILE A 44 GLY A 45 -124.72 REMARK 500 GLY A 69 LEU A 70 142.97 REMARK 500 LEU A 70 GLU A 71 -149.85 REMARK 500 ILE A 172 TYR A 173 140.41 REMARK 500 PRO C 639 THR C 640 -136.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1175 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 25 OG REMARK 620 2 THR A 43 OG1 79.9 REMARK 620 3 GTP A 900 O3G 165.8 86.8 REMARK 620 4 GTP A 900 O2B 90.1 165.4 101.9 REMARK 620 5 HOH A2005 O 97.9 88.2 86.6 103.9 REMARK 620 6 HOH A2006 O 85.8 77.0 86.2 91.8 163.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1175 REMARK 999 REMARK 999 SEQUENCE REMARK 999 NON-NATIVE RESIDUES AT N-TERMINUS DUE TO CLONING SITE. REMARK 999 ALSO, SEVERAL RESIDUES HAVE FLEXIBLE SIDE CHAINS AND ARE REMARK 999 MODELED AS ALANINE. FINALLY, THERE IS A SINGLE-SITE REMARK 999 MUTATION (Q70L) IN RAB14. CHAIN C IS UNIPROT ISOFORM 3 Q6WKZ4-3. DBREF 4D0G A 8 180 UNP P61106 RAB14_HUMAN 8 180 DBREF 4D0G C 582 649 UNP Q6WKZ4 RFIP1_HUMAN 582 649 SEQADV 4D0G MET A 6 UNP P61106 EXPRESSION TAG SEQADV 4D0G SER A 7 UNP P61106 EXPRESSION TAG SEQADV 4D0G LEU A 70 UNP P61106 GLN 70 ENGINEERED MUTATION SEQADV 4D0G MET C 581 UNP Q6WKZ4 EXPRESSION TAG SEQRES 1 A 175 MET SER TYR SER TYR ILE PHE LYS TYR ILE ILE ILE GLY SEQRES 2 A 175 ASP MET GLY VAL GLY LYS SER CYS LEU LEU HIS GLN PHE SEQRES 3 A 175 THR GLU LYS LYS PHE MET ALA ASP CYS PRO HIS THR ILE SEQRES 4 A 175 GLY VAL GLU PHE GLY THR ARG ILE ILE GLU VAL SER GLY SEQRES 5 A 175 GLN LYS ILE LYS LEU GLN ILE TRP ASP THR ALA GLY LEU SEQRES 6 A 175 GLU ARG PHE ARG ALA VAL THR ARG SER TYR TYR ARG GLY SEQRES 7 A 175 ALA ALA GLY ALA LEU MET VAL TYR ASP ILE THR ARG ARG SEQRES 8 A 175 SER THR TYR ASN HIS LEU SER SER TRP LEU THR ASP ALA SEQRES 9 A 175 ARG ASN LEU THR ASN PRO ASN THR VAL ILE ILE LEU ILE SEQRES 10 A 175 GLY ASN LYS ALA ASP LEU GLU ALA GLN ARG ASP VAL THR SEQRES 11 A 175 TYR GLU GLU ALA LYS GLN PHE ALA GLU GLU ASN GLY LEU SEQRES 12 A 175 LEU PHE LEU GLU ALA SER ALA LYS THR GLY GLU ASN VAL SEQRES 13 A 175 GLU ASP ALA PHE LEU GLU ALA ALA LYS LYS ILE TYR GLN SEQRES 14 A 175 ASN ILE GLN ASP GLY SER SEQRES 1 C 69 MET SER ASP PRO ALA PHE ALA TYR ALA GLN LEU THR HIS SEQRES 2 C 69 ASP GLU LEU ILE GLN LEU VAL LEU LYS GLN LYS GLU THR SEQRES 3 C 69 ILE SER LYS LYS GLU PHE GLN VAL ARG GLU LEU GLU ASP SEQRES 4 C 69 TYR ILE ASP ASN LEU LEU VAL ARG VAL MET GLU GLU THR SEQRES 5 C 69 PRO ASN ILE LEU ARG ILE PRO THR GLN VAL GLY LYS LYS SEQRES 6 C 69 ALA GLY LYS MET HET GTP A 900 32 HET MG A1175 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GTP C10 H16 N5 O14 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *17(H2 O) HELIX 1 1 GLY A 23 LYS A 34 1 12 HELIX 2 2 VAL A 76 ARG A 82 1 7 HELIX 3 3 ARG A 95 HIS A 101 1 7 HELIX 4 4 HIS A 101 THR A 113 1 13 HELIX 5 5 LEU A 128 ARG A 132 5 5 HELIX 6 6 THR A 135 ASN A 146 1 12 HELIX 7 7 ASN A 160 TYR A 173 1 14 HELIX 8 8 GLN C 598 THR C 632 1 35 HELIX 9 9 PRO C 633 LEU C 636 5 4 SHEET 1 AA 6 VAL A 46 VAL A 55 0 SHEET 2 AA 6 GLN A 58 THR A 67 -1 O GLN A 58 N VAL A 55 SHEET 3 AA 6 ILE A 11 ILE A 17 1 O PHE A 12 N GLN A 63 SHEET 4 AA 6 GLY A 86 ASP A 92 1 O GLY A 86 N ILE A 15 SHEET 5 AA 6 VAL A 118 ASN A 124 1 O VAL A 118 N ALA A 87 SHEET 6 AA 6 LEU A 149 GLU A 152 1 O LEU A 149 N LEU A 121 SSBOND 1 CYS A 26 CYS A 40 1555 1555 2.06 LINK OG SER A 25 MG MG A1175 1555 1555 1.87 LINK OG1 THR A 43 MG MG A1175 1555 1555 2.36 LINK O3G GTP A 900 MG MG A1175 1555 1555 2.00 LINK O2B GTP A 900 MG MG A1175 1555 1555 1.89 LINK MG MG A1175 O HOH A2005 1555 1555 2.09 LINK MG MG A1175 O HOH A2006 1555 1555 2.27 CISPEP 1 ILE C 638 PRO C 639 0 -3.54 SITE 1 AC1 25 ASP A 19 MET A 20 GLY A 21 VAL A 22 SITE 2 AC1 25 GLY A 23 LYS A 24 SER A 25 CYS A 26 SITE 3 AC1 25 PHE A 36 ALA A 38 ASP A 39 CYS A 40 SITE 4 AC1 25 HIS A 42 THR A 43 GLY A 69 ASN A 124 SITE 5 AC1 25 LYS A 125 ASP A 127 LEU A 128 SER A 154 SITE 6 AC1 25 ALA A 155 LYS A 156 MG A1175 HOH A2005 SITE 7 AC1 25 HOH A2006 SITE 1 AC2 5 SER A 25 THR A 43 GTP A 900 HOH A2005 SITE 2 AC2 5 HOH A2006 CRYST1 95.870 148.228 38.808 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010431 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025768 0.00000