PDB Short entry for 4DM6 HEADER TRANSCRIPTION/PROTEIN BINDING 07-FEB-12 4DM6 TITLE CRYSTAL STRUCTURE OF RARB LBD HOMODIMER IN COMPLEX WITH TTNPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 176-421; COMPND 5 SYNONYM: RAR-BETA, HBV-ACTIVATED PROTEIN, NUCLEAR RECEPTOR SUBFAMILY COMPND 6 1 GROUP B MEMBER 2, RAR-EPSILON; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 10 CHAIN: E, F; COMPND 11 FRAGMENT: UNP RESIDUES 676-700; COMPND 12 SYNONYM: NCOA-1, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74, BHLHE74, COMPND 13 PROTEIN HIN-2, RIP160, RENAL CARCINOMA ANTIGEN NY-REN-52, STEROID COMPND 14 RECEPTOR COACTIVATOR 1, SRC-1; COMPND 15 EC: 2.3.1.48; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RARB, HAP, NR1B2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, NUCLEAR RECEPTOR, RETINOIC ACID, ALPHA HELICAL KEYWDS 2 SANDWICH, TRANSCRIPTION REGULATOR, RETINOIC ACID BINDING, NUCLEUS - KEYWDS 3 CYTOPLASM, TRANSCRIPTION-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.OSZ,Y.BRELIVET,C.PELUSO-ILTIS,V.CURA,S.EILER,M.RUFF,W.BOURGUET, AUTHOR 2 N.ROCHEL,D.MORAS REVDAT 3 28-FEB-24 4DM6 1 REMARK SEQADV REVDAT 2 16-MAY-12 4DM6 1 JRNL REVDAT 1 07-MAR-12 4DM6 0 JRNL AUTH J.OSZ,Y.BRELIVET,C.PELUSO-ILTIS,V.CURA,S.EILER,M.RUFF, JRNL AUTH 2 W.BOURGUET,N.ROCHEL,D.MORAS JRNL TITL STRUCTURAL BASIS FOR A MOLECULAR ALLOSTERIC CONTROL JRNL TITL 2 MECHANISM OF COFACTOR BINDING TO NUCLEAR RECEPTORS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 E588 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22355136 JRNL DOI 10.1073/PNAS.1118192109 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 38045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2003 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.080 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DM6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0093 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39762 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% POLYETHYLENE GLYCOL 8000, 0.2 M REMARK 280 KCL, 0.01 M MGCL2 AND 0.05 M MES, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K, PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.04500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.07000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.07000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.04500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 157 REMARK 465 GLY A 158 REMARK 465 SER A 159 REMARK 465 SER A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 SER A 167 REMARK 465 SER A 168 REMARK 465 GLY A 169 REMARK 465 LEU A 170 REMARK 465 VAL A 171 REMARK 465 PRO A 172 REMARK 465 ARG A 173 REMARK 465 GLY A 174 REMARK 465 SER A 175 REMARK 465 HIS A 176 REMARK 465 MET A 177 REMARK 465 ASN A 418 REMARK 465 SER A 419 REMARK 465 GLU A 420 REMARK 465 GLY A 421 REMARK 465 HIS A 422 REMARK 465 GLU A 423 REMARK 465 MET B 1157 REMARK 465 GLY B 1158 REMARK 465 SER B 1159 REMARK 465 SER B 1160 REMARK 465 HIS B 1161 REMARK 465 HIS B 1162 REMARK 465 HIS B 1163 REMARK 465 HIS B 1164 REMARK 465 HIS B 1165 REMARK 465 HIS B 1166 REMARK 465 SER B 1167 REMARK 465 SER B 1168 REMARK 465 GLY B 1169 REMARK 465 LEU B 1170 REMARK 465 VAL B 1171 REMARK 465 PRO B 1172 REMARK 465 ARG B 1173 REMARK 465 GLY B 1174 REMARK 465 SER B 1175 REMARK 465 HIS B 1176 REMARK 465 MET B 1177 REMARK 465 GLU B 1178 REMARK 465 SER B 1179 REMARK 465 SER B 1419 REMARK 465 GLU B 1420 REMARK 465 GLY B 1421 REMARK 465 HIS B 1422 REMARK 465 GLU B 1423 REMARK 465 CYS E 676 REMARK 465 PRO E 677 REMARK 465 SER E 678 REMARK 465 SER E 679 REMARK 465 HIS E 680 REMARK 465 SER E 681 REMARK 465 SER E 682 REMARK 465 LEU E 683 REMARK 465 THR E 684 REMARK 465 GLU E 685 REMARK 465 GLY E 697 REMARK 465 SER E 698 REMARK 465 PRO E 699 REMARK 465 SER E 700 REMARK 465 CYS F 776 REMARK 465 PRO F 777 REMARK 465 SER F 778 REMARK 465 SER F 779 REMARK 465 HIS F 780 REMARK 465 SER F 781 REMARK 465 SER F 782 REMARK 465 LEU F 783 REMARK 465 THR F 784 REMARK 465 GLU F 785 REMARK 465 SER F 798 REMARK 465 PRO F 799 REMARK 465 SER F 800 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 PRO A 373 CG CD REMARK 470 ASN B1418 CG OD1 ND2 REMARK 470 ARG E 686 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 696 CG CD OE1 OE2 REMARK 470 ARG F 786 CB CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 206 CG CD OE1 NE2 REMARK 480 LYS A 264 NZ REMARK 480 GLU B 1395 OE1 OE2 REMARK 480 LYS E 688 CE NZ REMARK 480 GLN E 695 CD OE1 NE2 REMARK 480 LYS F 788 CE NZ REMARK 480 GLU F 796 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 213 CB ASN A 213 CG -0.143 REMARK 500 SER A 214 CB SER A 214 OG -0.091 REMARK 500 SER A 214 C SER A 214 O -0.130 REMARK 500 ALA A 216 CA ALA A 216 CB -0.160 REMARK 500 SER B1214 C SER B1214 O -0.174 REMARK 500 SER B1215 CB SER B1215 OG -0.106 REMARK 500 SER B1215 C SER B1215 O -0.195 REMARK 500 ALA B1216 C ALA B1216 O -0.159 REMARK 500 LEU E 690 C LEU E 690 O -0.128 REMARK 500 HIS E 691 C HIS E 691 O -0.119 REMARK 500 LEU F 794 C LEU F 794 O -0.182 REMARK 500 GLN F 795 CD GLN F 795 OE1 -0.136 REMARK 500 GLN F 795 C GLN F 795 O -0.148 REMARK 500 GLU F 796 CB GLU F 796 CG -0.213 REMARK 500 GLU F 796 C GLU F 796 O -0.143 REMARK 500 GLY F 797 CA GLY F 797 C -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B1215 N - CA - C ANGL. DEV. = 18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 183 59.37 -145.04 REMARK 500 PHE A 201 93.88 -166.96 REMARK 500 SER A 215 47.18 27.76 REMARK 500 ASP A 217 -65.00 -92.63 REMARK 500 LEU A 222 128.49 -171.96 REMARK 500 ASP A 343 32.89 72.73 REMARK 500 SER B1215 43.93 27.94 REMARK 500 GLU F 796 -88.84 -109.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTB A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTB B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN E OF NUCLEAR RECEPTOR REMARK 800 COACTIVATOR 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XAP RELATED DB: PDB REMARK 900 RELATED ID: 4DM8 RELATED DB: PDB REMARK 900 RELATED ID: 4DMA RELATED DB: PDB DBREF 4DM6 A 178 423 UNP P10826 RARB_HUMAN 176 421 DBREF 4DM6 B 1178 1423 UNP P10826 RARB_HUMAN 176 421 DBREF 4DM6 E 676 700 UNP Q15788 NCOA1_HUMAN 676 700 DBREF 4DM6 F 776 800 UNP Q15788 NCOA1_HUMAN 676 700 SEQADV 4DM6 MET A 157 UNP P10826 INITIATING METHIONINE SEQADV 4DM6 GLY A 158 UNP P10826 EXPRESSION TAG SEQADV 4DM6 SER A 159 UNP P10826 EXPRESSION TAG SEQADV 4DM6 SER A 160 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS A 161 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS A 162 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS A 163 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS A 164 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS A 165 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS A 166 UNP P10826 EXPRESSION TAG SEQADV 4DM6 SER A 167 UNP P10826 EXPRESSION TAG SEQADV 4DM6 SER A 168 UNP P10826 EXPRESSION TAG SEQADV 4DM6 GLY A 169 UNP P10826 EXPRESSION TAG SEQADV 4DM6 LEU A 170 UNP P10826 EXPRESSION TAG SEQADV 4DM6 VAL A 171 UNP P10826 EXPRESSION TAG SEQADV 4DM6 PRO A 172 UNP P10826 EXPRESSION TAG SEQADV 4DM6 ARG A 173 UNP P10826 EXPRESSION TAG SEQADV 4DM6 GLY A 174 UNP P10826 EXPRESSION TAG SEQADV 4DM6 SER A 175 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS A 176 UNP P10826 EXPRESSION TAG SEQADV 4DM6 MET A 177 UNP P10826 EXPRESSION TAG SEQADV 4DM6 MET B 1157 UNP P10826 INITIATING METHIONINE SEQADV 4DM6 GLY B 1158 UNP P10826 EXPRESSION TAG SEQADV 4DM6 SER B 1159 UNP P10826 EXPRESSION TAG SEQADV 4DM6 SER B 1160 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS B 1161 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS B 1162 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS B 1163 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS B 1164 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS B 1165 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS B 1166 UNP P10826 EXPRESSION TAG SEQADV 4DM6 SER B 1167 UNP P10826 EXPRESSION TAG SEQADV 4DM6 SER B 1168 UNP P10826 EXPRESSION TAG SEQADV 4DM6 GLY B 1169 UNP P10826 EXPRESSION TAG SEQADV 4DM6 LEU B 1170 UNP P10826 EXPRESSION TAG SEQADV 4DM6 VAL B 1171 UNP P10826 EXPRESSION TAG SEQADV 4DM6 PRO B 1172 UNP P10826 EXPRESSION TAG SEQADV 4DM6 ARG B 1173 UNP P10826 EXPRESSION TAG SEQADV 4DM6 GLY B 1174 UNP P10826 EXPRESSION TAG SEQADV 4DM6 SER B 1175 UNP P10826 EXPRESSION TAG SEQADV 4DM6 HIS B 1176 UNP P10826 EXPRESSION TAG SEQADV 4DM6 MET B 1177 UNP P10826 EXPRESSION TAG SEQRES 1 A 267 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 267 LEU VAL PRO ARG GLY SER HIS MET GLU SER TYR GLU MET SEQRES 3 A 267 THR ALA GLU LEU ASP ASP LEU THR GLU LYS ILE ARG LYS SEQRES 4 A 267 ALA HIS GLN GLU THR PHE PRO SER LEU CYS GLN LEU GLY SEQRES 5 A 267 LYS TYR THR THR ASN SER SER ALA ASP HIS ARG VAL ARG SEQRES 6 A 267 LEU ASP LEU GLY LEU TRP ASP LYS PHE SER GLU LEU ALA SEQRES 7 A 267 THR LYS CYS ILE ILE LYS ILE VAL GLU PHE ALA LYS ARG SEQRES 8 A 267 LEU PRO GLY PHE THR GLY LEU THR ILE ALA ASP GLN ILE SEQRES 9 A 267 THR LEU LEU LYS ALA ALA CYS LEU ASP ILE LEU ILE LEU SEQRES 10 A 267 ARG ILE CYS THR ARG TYR THR PRO GLU GLN ASP THR MET SEQRES 11 A 267 THR PHE SER ASP GLY LEU THR LEU ASN ARG THR GLN MET SEQRES 12 A 267 HIS ASN ALA GLY PHE GLY PRO LEU THR ASP LEU VAL PHE SEQRES 13 A 267 THR PHE ALA ASN GLN LEU LEU PRO LEU GLU MET ASP ASP SEQRES 14 A 267 THR GLU THR GLY LEU LEU SER ALA ILE CYS LEU ILE CYS SEQRES 15 A 267 GLY ASP ARG GLN ASP LEU GLU GLU PRO THR LYS VAL ASP SEQRES 16 A 267 LYS LEU GLN GLU PRO LEU LEU GLU ALA LEU LYS ILE TYR SEQRES 17 A 267 ILE ARG LYS ARG ARG PRO SER LYS PRO HIS MET PHE PRO SEQRES 18 A 267 LYS ILE LEU MET LYS ILE THR ASP LEU ARG SER ILE SER SEQRES 19 A 267 ALA LYS GLY ALA GLU ARG VAL ILE THR LEU LYS MET GLU SEQRES 20 A 267 ILE PRO GLY SER MET PRO PRO LEU ILE GLN GLU MET LEU SEQRES 21 A 267 GLU ASN SER GLU GLY HIS GLU SEQRES 1 B 267 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 267 LEU VAL PRO ARG GLY SER HIS MET GLU SER TYR GLU MET SEQRES 3 B 267 THR ALA GLU LEU ASP ASP LEU THR GLU LYS ILE ARG LYS SEQRES 4 B 267 ALA HIS GLN GLU THR PHE PRO SER LEU CYS GLN LEU GLY SEQRES 5 B 267 LYS TYR THR THR ASN SER SER ALA ASP HIS ARG VAL ARG SEQRES 6 B 267 LEU ASP LEU GLY LEU TRP ASP LYS PHE SER GLU LEU ALA SEQRES 7 B 267 THR LYS CYS ILE ILE LYS ILE VAL GLU PHE ALA LYS ARG SEQRES 8 B 267 LEU PRO GLY PHE THR GLY LEU THR ILE ALA ASP GLN ILE SEQRES 9 B 267 THR LEU LEU LYS ALA ALA CYS LEU ASP ILE LEU ILE LEU SEQRES 10 B 267 ARG ILE CYS THR ARG TYR THR PRO GLU GLN ASP THR MET SEQRES 11 B 267 THR PHE SER ASP GLY LEU THR LEU ASN ARG THR GLN MET SEQRES 12 B 267 HIS ASN ALA GLY PHE GLY PRO LEU THR ASP LEU VAL PHE SEQRES 13 B 267 THR PHE ALA ASN GLN LEU LEU PRO LEU GLU MET ASP ASP SEQRES 14 B 267 THR GLU THR GLY LEU LEU SER ALA ILE CYS LEU ILE CYS SEQRES 15 B 267 GLY ASP ARG GLN ASP LEU GLU GLU PRO THR LYS VAL ASP SEQRES 16 B 267 LYS LEU GLN GLU PRO LEU LEU GLU ALA LEU LYS ILE TYR SEQRES 17 B 267 ILE ARG LYS ARG ARG PRO SER LYS PRO HIS MET PHE PRO SEQRES 18 B 267 LYS ILE LEU MET LYS ILE THR ASP LEU ARG SER ILE SER SEQRES 19 B 267 ALA LYS GLY ALA GLU ARG VAL ILE THR LEU LYS MET GLU SEQRES 20 B 267 ILE PRO GLY SER MET PRO PRO LEU ILE GLN GLU MET LEU SEQRES 21 B 267 GLU ASN SER GLU GLY HIS GLU SEQRES 1 E 25 CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS LYS SEQRES 2 E 25 ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER SEQRES 1 F 25 CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS LYS SEQRES 2 F 25 ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER HET TTB A 501 26 HET TTB B1501 26 HETNAM TTB 4-[(1E)-2-(5,5,8,8-TETRAMETHYL-5,6,7,8- HETNAM 2 TTB TETRAHYDRONAPHTHALEN-2-YL)PROP-1-ENYL]BENZOIC ACID HETSYN TTB TTNPB FORMUL 5 TTB 2(C24 H28 O2) FORMUL 7 HOH *178(H2 O) HELIX 1 1 THR A 183 PHE A 201 1 19 HELIX 2 2 ASP A 223 ARG A 247 1 25 HELIX 3 3 GLY A 250 LEU A 254 5 5 HELIX 4 4 THR A 255 THR A 277 1 23 HELIX 5 5 ARG A 296 GLY A 303 1 8 HELIX 6 6 PHE A 304 PRO A 306 5 3 HELIX 7 7 LEU A 307 LEU A 319 1 13 HELIX 8 8 PRO A 320 GLU A 322 5 3 HELIX 9 9 ASP A 324 ILE A 337 1 14 HELIX 10 10 GLU A 346 ARG A 369 1 24 HELIX 11 11 HIS A 374 ILE A 404 1 31 HELIX 12 12 PRO A 409 GLU A 417 1 9 HELIX 13 13 GLU B 1181 GLU B 1199 1 19 HELIX 14 14 SER B 1203 LEU B 1207 5 5 HELIX 15 15 ASP B 1223 ARG B 1247 1 25 HELIX 16 16 GLY B 1250 LEU B 1254 5 5 HELIX 17 17 THR B 1255 THR B 1277 1 23 HELIX 18 18 ARG B 1296 GLY B 1303 1 8 HELIX 19 19 PHE B 1304 PRO B 1306 5 3 HELIX 20 20 LEU B 1307 LEU B 1319 1 13 HELIX 21 21 PRO B 1320 GLU B 1322 5 3 HELIX 22 22 ASP B 1324 ILE B 1337 1 14 HELIX 23 23 GLU B 1346 ARG B 1369 1 24 HELIX 24 24 HIS B 1374 MET B 1381 1 8 HELIX 25 25 MET B 1381 ILE B 1404 1 24 HELIX 26 26 PRO B 1409 LEU B 1416 1 8 HELIX 27 27 HIS E 687 GLU E 696 1 10 HELIX 28 28 LYS F 788 GLU F 796 1 9 SHEET 1 A 3 TYR A 279 THR A 280 0 SHEET 2 A 3 THR A 285 THR A 287 -1 O THR A 285 N THR A 280 SHEET 3 A 3 THR A 293 ASN A 295 -1 O LEU A 294 N MET A 286 SHEET 1 B 3 TYR B1279 THR B1280 0 SHEET 2 B 3 THR B1285 THR B1287 -1 O THR B1285 N THR B1280 SHEET 3 B 3 THR B1293 ASN B1295 -1 O LEU B1294 N MET B1286 SITE 1 AC1 14 PHE A 201 PHE A 230 LEU A 233 ALA A 234 SITE 2 AC1 14 LEU A 271 ILE A 272 ILE A 275 ARG A 278 SITE 3 AC1 14 PHE A 288 SER A 289 GLY A 393 VAL A 397 SITE 4 AC1 14 LEU A 416 HOH A 617 SITE 1 AC2 18 PHE B1201 PHE B1230 LEU B1233 ALA B1234 SITE 2 AC2 18 CYS B1237 LEU B1271 ILE B1272 ILE B1275 SITE 3 AC2 18 ARG B1278 PHE B1288 SER B1289 GLY B1303 SITE 4 AC2 18 PHE B1304 GLY B1393 VAL B1397 LEU B1400 SITE 5 AC2 18 ILE B1412 HOH B1628 SITE 1 AC3 12 LYS A 246 GLN A 259 ILE A 260 LYS A 264 SITE 2 AC3 12 PRO A 410 LEU A 411 GLU A 414 MET A 415 SITE 3 AC3 12 GLU A 417 HOH A 650 MET B1182 GLU B1185 CRYST1 58.090 84.060 102.140 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017215 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009790 0.00000