PDB Short entry for 4DMW HEADER TRANSFERASE 08-FEB-12 4DMW TITLE CRYSTAL STRUCTURE OF THE GT DOMAIN OF CLOSTRIDIUM DIFFICILE TOXIN A TITLE 2 (TCDA) IN COMPLEX WITH UDP AND MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GLUCOSYLTRANSFERASE DOMAIN (UNP RESIDUES 1-541); COMPND 5 SYNONYM: TCDA; COMPND 6 EC: 2.4.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 GENE: TOXA, TCDA; SOURCE 5 EXPRESSION_SYSTEM: BREVIBACILLUS CHOSHINENSIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 54911 KEYWDS GLUCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MALITO,N.D'URZO,M.J.BOTTOMLEY,M.BIANCUCCI,M.SCARSELLI,D.MAIONE, AUTHOR 2 M.MARTINELLI REVDAT 3 13-SEP-23 4DMW 1 REMARK SEQADV LINK REVDAT 2 31-OCT-12 4DMW 1 JRNL REVDAT 1 18-JUL-12 4DMW 0 JRNL AUTH N.D'URZO,E.MALITO,M.BIANCUCCI,M.J.BOTTOMLEY,D.MAIONE, JRNL AUTH 2 M.SCARSELLI,M.MARTINELLI JRNL TITL THE STRUCTURE OF CLOSTRIDIUM DIFFICILE TOXIN A JRNL TITL 2 GLUCOSYLTRANSFERASE DOMAIN BOUND TO MN2+ AND UDP PROVIDES JRNL TITL 3 INSIGHTS INTO GLUCOSYLTRANSFERASE ACTIVITY AND PRODUCT JRNL TITL 4 RELEASE. JRNL REF FEBS J. V. 279 3085 2012 JRNL REFN ISSN 1742-464X JRNL PMID 22747490 JRNL DOI 10.1111/J.1742-4658.2012.08688.X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 22429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1250 - 4.9975 0.93 2904 132 0.1846 0.2221 REMARK 3 2 4.9975 - 3.9677 0.95 2807 160 0.1538 0.2281 REMARK 3 3 3.9677 - 3.4665 0.92 2648 166 0.2322 0.2860 REMARK 3 4 3.4665 - 3.1497 0.94 2716 152 0.2104 0.2461 REMARK 3 5 3.1497 - 2.9240 0.92 2642 149 0.2073 0.2663 REMARK 3 6 2.9240 - 2.7516 0.90 2577 130 0.2105 0.2671 REMARK 3 7 2.7516 - 2.6138 0.88 2524 133 0.2381 0.2964 REMARK 3 8 2.6138 - 2.5000 0.86 2469 120 0.2708 0.3746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 17.04 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4493 REMARK 3 ANGLE : 1.173 6068 REMARK 3 CHIRALITY : 0.079 679 REMARK 3 PLANARITY : 0.004 771 REMARK 3 DIHEDRAL : 16.797 1703 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DMW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93930 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22520 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 78.365 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : 0.52100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4DMV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DIAMMONIUM TARTRATE, 20% W/V REMARK 280 PEG3350, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.33000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ALA A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 ASP A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 LYS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 196 REMARK 465 THR A 197 REMARK 465 GLY A 539 REMARK 465 GLY A 540 REMARK 465 SER A 541 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 2 CB OG REMARK 480 GLU A 112 CG CD OE1 OE2 REMARK 480 GLN A 164 CB CG CD OE1 NE2 REMARK 480 ASP A 216 CB CG OD1 OD2 REMARK 480 ASP A 295 CB CG OD1 OD2 REMARK 480 ASP A 338 CB CG OD1 OD2 REMARK 480 GLU A 363 CB CG CD OE1 OE2 REMARK 480 GLU A 504 CB CG CD OE1 OE2 REMARK 480 GLN A 523 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 8 O HOH A 720 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 53.56 -102.16 REMARK 500 SER A 15 147.69 -171.83 REMARK 500 THR A 38 152.48 -46.41 REMARK 500 TYR A 62 66.93 -116.57 REMARK 500 ASN A 121 62.58 -119.50 REMARK 500 SER A 243 73.50 48.64 REMARK 500 LEU A 296 -60.19 -23.81 REMARK 500 THR A 330 150.90 -46.64 REMARK 500 GLU A 363 -113.35 51.63 REMARK 500 PRO A 451 32.52 -86.72 REMARK 500 LEU A 510 78.91 -105.52 REMARK 500 SER A 520 24.70 -151.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD2 REMARK 620 2 UDP A 602 O2B 141.5 REMARK 620 3 UDP A 602 O2A 75.4 76.2 REMARK 620 4 HOH A 763 O 93.1 118.1 102.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DMV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO GT DOMAIN OF CLOSTRIDIUM DIFFICILE TOXIN A REMARK 900 (TCDA) REMARK 900 RELATED ID: 3SRZ RELATED DB: PDB REMARK 900 CLOSTRIDIUM DIFFICILE TOXIN A (TCDA) GLUCOLSYLTRANSFERASE DOMAIN REMARK 900 BOUND TO UDP-GLUCOSE REMARK 900 RELATED ID: 3SS1 RELATED DB: PDB REMARK 900 CLOSTRIDIUM DIFFICILE TOXIN A (TCDA) GLUCOLSYLTRANSFERASE DOMAIN DBREF 4DMW A 1 541 UNP P16154 TOXA_CLODI 1 541 SEQADV 4DMW MET A -14 UNP P16154 EXPRESSION TAG SEQADV 4DMW ALA A -13 UNP P16154 EXPRESSION TAG SEQADV 4DMW HIS A -12 UNP P16154 EXPRESSION TAG SEQADV 4DMW HIS A -11 UNP P16154 EXPRESSION TAG SEQADV 4DMW HIS A -10 UNP P16154 EXPRESSION TAG SEQADV 4DMW HIS A -9 UNP P16154 EXPRESSION TAG SEQADV 4DMW HIS A -8 UNP P16154 EXPRESSION TAG SEQADV 4DMW HIS A -7 UNP P16154 EXPRESSION TAG SEQADV 4DMW ASP A -6 UNP P16154 EXPRESSION TAG SEQADV 4DMW ASP A -5 UNP P16154 EXPRESSION TAG SEQADV 4DMW ASP A -4 UNP P16154 EXPRESSION TAG SEQADV 4DMW ASP A -3 UNP P16154 EXPRESSION TAG SEQADV 4DMW LYS A -2 UNP P16154 EXPRESSION TAG SEQADV 4DMW GLY A -1 UNP P16154 EXPRESSION TAG SEQADV 4DMW SER A 0 UNP P16154 EXPRESSION TAG SEQRES 1 A 556 MET ALA HIS HIS HIS HIS HIS HIS ASP ASP ASP ASP LYS SEQRES 2 A 556 GLY SER MET SER LEU ILE SER LYS GLU GLU LEU ILE LYS SEQRES 3 A 556 LEU ALA TYR SER ILE ARG PRO ARG GLU ASN GLU TYR LYS SEQRES 4 A 556 THR ILE LEU THR ASN LEU ASP GLU TYR ASN LYS LEU THR SEQRES 5 A 556 THR ASN ASN ASN GLU ASN LYS TYR LEU GLN LEU LYS LYS SEQRES 6 A 556 LEU ASN GLU SER ILE ASP VAL PHE MET ASN LYS TYR LYS SEQRES 7 A 556 THR SER SER ARG ASN ARG ALA LEU SER ASN LEU LYS LYS SEQRES 8 A 556 ASP ILE LEU LYS GLU VAL ILE LEU ILE LYS ASN SER ASN SEQRES 9 A 556 THR SER PRO VAL GLU LYS ASN LEU HIS PHE VAL TRP ILE SEQRES 10 A 556 GLY GLY GLU VAL SER ASP ILE ALA LEU GLU TYR ILE LYS SEQRES 11 A 556 GLN TRP ALA ASP ILE ASN ALA GLU TYR ASN ILE LYS LEU SEQRES 12 A 556 TRP TYR ASP SER GLU ALA PHE LEU VAL ASN THR LEU LYS SEQRES 13 A 556 LYS ALA ILE VAL GLU SER SER THR THR GLU ALA LEU GLN SEQRES 14 A 556 LEU LEU GLU GLU GLU ILE GLN ASN PRO GLN PHE ASP ASN SEQRES 15 A 556 MET LYS PHE TYR LYS LYS ARG MET GLU PHE ILE TYR ASP SEQRES 16 A 556 ARG GLN LYS ARG PHE ILE ASN TYR TYR LYS SER GLN ILE SEQRES 17 A 556 ASN LYS PRO THR VAL PRO THR ILE ASP ASP ILE ILE LYS SEQRES 18 A 556 SER HIS LEU VAL SER GLU TYR ASN ARG ASP GLU THR VAL SEQRES 19 A 556 LEU GLU SER TYR ARG THR ASN SER LEU ARG LYS ILE ASN SEQRES 20 A 556 SER ASN HIS GLY ILE ASP ILE ARG ALA ASN SER LEU PHE SEQRES 21 A 556 THR GLU GLN GLU LEU LEU ASN ILE TYR SER GLN GLU LEU SEQRES 22 A 556 LEU ASN ARG GLY ASN LEU ALA ALA ALA SER ASP ILE VAL SEQRES 23 A 556 ARG LEU LEU ALA LEU LYS ASN PHE GLY GLY VAL TYR LEU SEQRES 24 A 556 ASP VAL ASP MET LEU PRO GLY ILE HIS SER ASP LEU PHE SEQRES 25 A 556 LYS THR ILE SER ARG PRO SER SER ILE GLY LEU ASP ARG SEQRES 26 A 556 TRP GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS SEQRES 27 A 556 LYS TYR ILE ASN ASN TYR THR SER GLU ASN PHE ASP LYS SEQRES 28 A 556 LEU ASP GLN GLN LEU LYS ASP ASN PHE LYS LEU ILE ILE SEQRES 29 A 556 GLU SER LYS SER GLU LYS SER GLU ILE PHE SER LYS LEU SEQRES 30 A 556 GLU ASN LEU ASN VAL SER ASP LEU GLU ILE LYS ILE ALA SEQRES 31 A 556 PHE ALA LEU GLY SER VAL ILE ASN GLN ALA LEU ILE SER SEQRES 32 A 556 LYS GLN GLY SER TYR LEU THR ASN LEU VAL ILE GLU GLN SEQRES 33 A 556 VAL LYS ASN ARG TYR GLN PHE LEU ASN GLN HIS LEU ASN SEQRES 34 A 556 PRO ALA ILE GLU SER ASP ASN ASN PHE THR ASP THR THR SEQRES 35 A 556 LYS ILE PHE HIS ASP SER LEU PHE ASN SER ALA THR ALA SEQRES 36 A 556 GLU ASN SER MET PHE LEU THR LYS ILE ALA PRO TYR LEU SEQRES 37 A 556 GLN VAL GLY PHE MET PRO GLU ALA ARG SER THR ILE SER SEQRES 38 A 556 LEU SER GLY PRO GLY ALA TYR ALA SER ALA TYR TYR ASP SEQRES 39 A 556 PHE ILE ASN LEU GLN GLU ASN THR ILE GLU LYS THR LEU SEQRES 40 A 556 LYS ALA SER ASP LEU ILE GLU PHE LYS PHE PRO GLU ASN SEQRES 41 A 556 ASN LEU SER GLN LEU THR GLU GLN GLU ILE ASN SER LEU SEQRES 42 A 556 TRP SER PHE ASP GLN ALA SER ALA LYS TYR GLN PHE GLU SEQRES 43 A 556 LYS TYR VAL ARG ASP TYR THR GLY GLY SER HET MN A 601 1 HET UDP A 602 25 HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 2 MN MN 2+ FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 HOH *65(H2 O) HELIX 1 1 SER A 5 ALA A 13 1 9 HELIX 2 2 GLU A 20 LYS A 35 1 16 HELIX 3 3 ASN A 40 TYR A 62 1 23 HELIX 4 4 ARG A 67 ASN A 87 1 21 HELIX 5 5 SER A 107 ASN A 121 1 15 HELIX 6 6 LEU A 136 GLN A 161 1 26 HELIX 7 7 ASP A 166 ILE A 193 1 28 HELIX 8 8 THR A 200 TYR A 213 1 14 HELIX 9 9 ASP A 216 SER A 233 1 18 HELIX 10 10 GLU A 247 LEU A 259 1 13 HELIX 11 11 ASN A 263 GLY A 280 1 18 HELIX 12 12 GLY A 307 LYS A 324 1 18 HELIX 13 13 ASN A 333 LEU A 337 5 5 HELIX 14 14 ASP A 338 GLU A 350 1 13 HELIX 15 15 GLU A 354 ILE A 358 5 5 HELIX 16 16 SER A 392 SER A 419 1 28 HELIX 17 17 ASN A 422 ASN A 436 1 15 HELIX 18 18 ASN A 442 ALA A 450 1 9 HELIX 19 19 PRO A 451 VAL A 455 5 5 HELIX 20 20 ARG A 462 SER A 466 5 5 HELIX 21 21 GLY A 469 ASN A 482 1 14 HELIX 22 22 LYS A 493 ILE A 498 1 6 HELIX 23 23 GLU A 499 LYS A 501 5 3 HELIX 24 24 PRO A 503 LEU A 507 5 5 HELIX 25 25 THR A 511 SER A 517 1 7 HELIX 26 26 ASP A 522 ASP A 536 1 15 SHEET 1 A 2 THR A 90 PRO A 92 0 SHEET 2 A 2 ASN A 366 SER A 368 -1 O VAL A 367 N SER A 91 SHEET 1 B 6 GLY A 236 ASP A 238 0 SHEET 2 B 6 ASN A 125 TYR A 130 1 N LEU A 128 O ILE A 237 SHEET 3 B 6 ASN A 96 VAL A 100 1 N PHE A 99 O TRP A 129 SHEET 4 B 6 GLY A 281 LEU A 284 1 O VAL A 282 N HIS A 98 SHEET 5 B 6 SER A 380 SER A 388 -1 O SER A 388 N GLY A 281 SHEET 6 B 6 ILE A 372 ALA A 377 -1 N ALA A 377 O SER A 380 LINK OD2 ASP A 287 MN MN A 601 1555 1555 2.64 LINK MN MN A 601 O2B UDP A 602 1555 1555 2.58 LINK MN MN A 601 O2A UDP A 602 1555 1555 2.63 LINK MN MN A 601 O HOH A 763 1555 1555 2.70 SITE 1 AC1 4 ASP A 287 GLU A 514 UDP A 602 HOH A 763 SITE 1 AC2 12 VAL A 100 TRP A 101 ILE A 102 LEU A 264 SITE 2 AC2 12 SER A 268 TYR A 283 ASP A 285 VAL A 286 SITE 3 AC2 12 ASP A 287 SER A 517 MN A 601 HOH A 719 CRYST1 66.660 156.730 65.750 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015002 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015209 0.00000