PDB Short entry for 4DXW HEADER TRANSPORT PROTEIN 28-FEB-12 4DXW TITLE CRYSTAL STRUCTURE OF NAVRH, A VOLTAGE-GATED SODIUM CHANNEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NAVRH; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALPHA PROTEOBACTERIUM HIMB114; SOURCE 3 ORGANISM_TAXID: 684719; SOURCE 4 GENE: HIMB114_0051, HIMB114_1443; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TETRAMERIC, VOLTAGE-GATED SODIUM CHANNEL, SODIUM SELECTIVE, VOLTAGE- KEYWDS 2 GATED ION CHANNEL, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHANG,W.L.REN,C.Y.YAN,J.W.WANG,N.YAN REVDAT 4 20-MAR-24 4DXW 1 HETSYN REVDAT 3 29-JUL-20 4DXW 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 10-JUL-13 4DXW 1 JRNL REVDAT 1 23-MAY-12 4DXW 0 JRNL AUTH X.ZHANG,W.L.REN,P.DECAEN,C.Y.YAN,X.TAO,L.TANG,J.J.WANG, JRNL AUTH 2 K.HASEGAWA,T.KUMASAKA,J.H.HE,J.W.WANG,D.E.CLAPHAM,N.YAN JRNL TITL CRYSTAL STRUCTURE OF AN ORTHOLOGUE OF THE NACHBAC JRNL TITL 2 VOLTAGE-GATED SODIUM CHANNEL JRNL REF NATURE V. 486 130 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22678295 JRNL DOI 10.1038/NATURE11054 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.610 REMARK 3 FREE R VALUE TEST SET COUNT : 1429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3342 - 6.5704 0.98 3032 147 0.2178 0.1586 REMARK 3 2 6.5704 - 5.2175 1.00 2937 215 0.2872 0.3967 REMARK 3 3 5.2175 - 4.5587 1.00 3120 0 0.2151 0.0000 REMARK 3 4 4.5587 - 4.1422 1.00 2818 276 0.2193 0.3091 REMARK 3 5 4.1422 - 3.8455 1.00 3099 0 0.2294 0.0000 REMARK 3 6 3.8455 - 3.6189 1.00 2699 387 0.2350 0.2900 REMARK 3 7 3.6189 - 3.4377 1.00 3098 0 0.2539 0.0000 REMARK 3 8 3.4377 - 3.2881 1.00 2690 404 0.2446 0.3329 REMARK 3 9 3.2881 - 3.1616 1.00 3077 0 0.2751 0.0000 REMARK 3 10 3.1616 - 3.0525 0.99 3019 0 0.3105 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 62.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.13010 REMARK 3 B22 (A**2) : 3.13010 REMARK 3 B33 (A**2) : -6.26470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7068 REMARK 3 ANGLE : 1.452 9621 REMARK 3 CHIRALITY : 0.093 1216 REMARK 3 PLANARITY : 0.006 1107 REMARK 3 DIHEDRAL : 21.763 2558 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 44.7968 -38.6596 14.9821 REMARK 3 T TENSOR REMARK 3 T11: 0.3993 T22: 0.3241 REMARK 3 T33: 0.3763 T12: -0.0014 REMARK 3 T13: 0.0763 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 1.3106 L22: 1.7756 REMARK 3 L33: 2.6100 L12: 0.1362 REMARK 3 L13: -0.0358 L23: -0.1166 REMARK 3 S TENSOR REMARK 3 S11: -0.1058 S12: -0.0673 S13: 0.0269 REMARK 3 S21: 0.2134 S22: -0.0382 S23: -0.0358 REMARK 3 S31: 0.0110 S32: 0.0283 S33: 0.0953 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0050 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31031 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 8000 (V/V), 100MM HEPES-NAOH, REMARK 280 PH 7.0, 100MM CACL2, 10% GLYCEROL, 20% 1,4-BUTANDIOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291KK REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.53550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.53550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 66 REMARK 465 LYS A 67 REMARK 465 GLN A 68 REMARK 465 LYS A 69 REMARK 465 ALA A 70 REMARK 465 ASP A 71 REMARK 465 PHE A 72 REMARK 465 PHE A 73 REMARK 465 LYS A 74 REMARK 465 ILE A 92 REMARK 465 PRO A 93 REMARK 465 ASN A 94 REMARK 465 ASN A 95 REMARK 465 SER A 96 REMARK 465 SER A 97 REMARK 465 PHE A 98 REMARK 465 LEU A 99 REMARK 465 GLU A 229 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 71 REMARK 465 PHE B 72 REMARK 465 PHE B 73 REMARK 465 LYS B 74 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 PRO C 3 REMARK 465 PHE C 4 REMARK 465 PHE C 5 REMARK 465 SER C 6 REMARK 465 SER C 7 REMARK 465 LEU C 8 REMARK 465 ARG C 62 REMARK 465 PHE C 63 REMARK 465 ILE C 64 REMARK 465 GLY C 65 REMARK 465 GLU C 66 REMARK 465 LYS C 67 REMARK 465 GLN C 68 REMARK 465 LYS C 69 REMARK 465 ALA C 70 REMARK 465 ASP C 71 REMARK 465 PHE C 72 REMARK 465 PHE C 73 REMARK 465 LYS C 74 REMARK 465 SER C 75 REMARK 465 ILE C 92 REMARK 465 PRO C 93 REMARK 465 ASN C 94 REMARK 465 ASN C 95 REMARK 465 SER C 96 REMARK 465 LYS C 227 REMARK 465 LEU C 228 REMARK 465 GLU C 229 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 PRO D 3 REMARK 465 PHE D 4 REMARK 465 PHE D 5 REMARK 465 SER D 6 REMARK 465 SER D 7 REMARK 465 LEU D 8 REMARK 465 LYS D 9 REMARK 465 ASP D 10 REMARK 465 ASN D 11 REMARK 465 ARG D 12 REMARK 465 ILE D 13 REMARK 465 ALA D 31 REMARK 465 THR D 32 REMARK 465 THR D 33 REMARK 465 TYR D 34 REMARK 465 GLY D 65 REMARK 465 GLU D 66 REMARK 465 LYS D 67 REMARK 465 GLN D 68 REMARK 465 LYS D 69 REMARK 465 ALA D 70 REMARK 465 ASP D 71 REMARK 465 PHE D 72 REMARK 465 PHE D 73 REMARK 465 LYS D 74 REMARK 465 SER D 75 REMARK 465 LEU D 228 REMARK 465 GLU D 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 229 CG CD OE1 OE2 REMARK 470 LYS D 227 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP A 77 OD1 ASP A 81 2.12 REMARK 500 CD1 ILE C 168 C6 BNG C 302 2.13 REMARK 500 OE1 GLU A 58 NH2 ARG A 62 2.15 REMARK 500 O TRP B 77 N ILE B 79 2.15 REMARK 500 O TRP B 77 N PHE B 80 2.15 REMARK 500 O ASN D 94 N SER D 96 2.17 REMARK 500 OH TYR A 49 O LEU A 89 2.17 REMARK 500 O PHE A 5 N SER A 7 2.18 REMARK 500 O ILE C 57 N LEU C 60 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 6 52.55 -53.87 REMARK 500 SER A 7 20.43 165.68 REMARK 500 ASN A 25 54.04 -63.77 REMARK 500 ALA A 26 -29.56 -162.06 REMARK 500 ASP A 37 95.25 -27.51 REMARK 500 PRO A 117 -32.75 -37.78 REMARK 500 TRP A 163 16.03 -143.53 REMARK 500 LEU A 179 19.42 55.42 REMARK 500 GLN A 225 31.02 -77.23 REMARK 500 LYS A 226 -53.45 174.42 REMARK 500 LYS A 227 43.49 -96.66 REMARK 500 SER B 6 -7.13 -54.91 REMARK 500 ILE B 29 130.83 169.43 REMARK 500 TYR B 34 24.55 -55.71 REMARK 500 GLU B 35 99.40 -176.16 REMARK 500 ASP B 37 99.30 -59.10 REMARK 500 LEU B 47 -70.17 -55.15 REMARK 500 LYS B 69 69.05 -63.07 REMARK 500 TRP B 77 -85.58 -56.04 REMARK 500 ASN B 78 -58.16 -3.95 REMARK 500 LEU B 89 -108.12 -75.53 REMARK 500 ILE B 92 100.52 47.52 REMARK 500 ASN B 95 17.72 41.59 REMARK 500 LEU B 99 -6.39 -160.44 REMARK 500 TRP B 163 17.37 -144.27 REMARK 500 ASP B 165 -163.79 -124.29 REMARK 500 ILE B 192 -86.24 -138.96 REMARK 500 GLN B 225 4.52 -65.58 REMARK 500 LYS B 226 -100.72 -145.86 REMARK 500 LYS B 227 -165.17 -77.32 REMARK 500 LEU B 228 -66.85 78.80 REMARK 500 ASP C 10 -121.79 -62.70 REMARK 500 ASN C 11 124.68 69.26 REMARK 500 ILE C 13 -77.66 -51.16 REMARK 500 PHE C 14 -63.30 -24.36 REMARK 500 ILE C 29 118.74 -32.30 REMARK 500 THR C 32 45.97 -82.26 REMARK 500 TYR C 34 -10.39 -48.61 REMARK 500 GLU C 35 132.57 -172.03 REMARK 500 LEU C 36 156.92 173.98 REMARK 500 ASP C 37 87.74 -46.84 REMARK 500 ILE C 57 -73.58 -81.72 REMARK 500 GLU C 58 -36.84 -28.86 REMARK 500 LEU C 60 -40.34 -28.90 REMARK 500 ILE C 84 -75.18 -52.71 REMARK 500 VAL C 115 -70.97 -48.24 REMARK 500 GLN C 225 79.38 -56.18 REMARK 500 PHE D 16 -58.66 -15.01 REMARK 500 ASN D 25 3.73 -63.98 REMARK 500 VAL D 27 68.21 -114.88 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PX4 B 301 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 401 O REMARK 620 2 HOH A 402 O 95.3 REMARK 620 3 HOH A 403 O 53.3 97.4 REMARK 620 4 HOH B 401 O 125.5 121.7 81.4 REMARK 620 5 HOH C 401 O 77.1 107.0 126.4 120.2 REMARK 620 6 HOH C 402 O 73.8 168.9 78.0 68.0 68.9 REMARK 620 N 1 2 3 4 5 DBREF 4DXW A 1 228 UNP D0RMU8 D0RMU8_9RICK 1 228 DBREF 4DXW B 1 228 UNP D0RMU8 D0RMU8_9RICK 1 228 DBREF 4DXW C 1 228 UNP D0RMU8 D0RMU8_9RICK 1 228 DBREF 4DXW D 1 228 UNP D0RMU8 D0RMU8_9RICK 1 228 SEQADV 4DXW SER A 208 UNP D0RMU8 GLY 208 ENGINEERED MUTATION SEQADV 4DXW GLU A 229 UNP D0RMU8 EXPRESSION TAG SEQADV 4DXW SER B 208 UNP D0RMU8 GLY 208 ENGINEERED MUTATION SEQADV 4DXW GLU B 229 UNP D0RMU8 EXPRESSION TAG SEQADV 4DXW SER C 208 UNP D0RMU8 GLY 208 ENGINEERED MUTATION SEQADV 4DXW GLU C 229 UNP D0RMU8 EXPRESSION TAG SEQADV 4DXW SER D 208 UNP D0RMU8 GLY 208 ENGINEERED MUTATION SEQADV 4DXW GLU D 229 UNP D0RMU8 EXPRESSION TAG SEQRES 1 A 229 MET THR PRO PHE PHE SER SER LEU LYS ASP ASN ARG ILE SEQRES 2 A 229 PHE GLN PHE THR VAL VAL SER ILE ILE ILE LEU ASN ALA SEQRES 3 A 229 VAL LEU ILE GLY ALA THR THR TYR GLU LEU ASP PRO LEU SEQRES 4 A 229 PHE LEU GLU THR ILE HIS LEU LEU ASP TYR GLY ILE THR SEQRES 5 A 229 ILE PHE PHE VAL ILE GLU ILE LEU ILE ARG PHE ILE GLY SEQRES 6 A 229 GLU LYS GLN LYS ALA ASP PHE PHE LYS SER GLY TRP ASN SEQRES 7 A 229 ILE PHE ASP THR VAL ILE VAL ALA ILE SER LEU ILE PRO SEQRES 8 A 229 ILE PRO ASN ASN SER SER PHE LEU VAL LEU ARG LEU LEU SEQRES 9 A 229 ARG ILE PHE ARG VAL LEU ARG LEU ILE SER VAL ILE PRO SEQRES 10 A 229 GLU LEU LYS GLN ILE ILE GLU ALA ILE LEU GLU SER VAL SEQRES 11 A 229 ARG ARG VAL PHE PHE VAL SER LEU LEU LEU PHE ILE ILE SEQRES 12 A 229 LEU TYR ILE TYR ALA THR MET GLY ALA ILE LEU PHE GLY SEQRES 13 A 229 ASN ASP ASP PRO SER ARG TRP GLY ASP LEU GLY ILE SER SEQRES 14 A 229 LEU ILE THR LEU PHE GLN VAL LEU THR LEU SER SER TRP SEQRES 15 A 229 GLU THR VAL MET LEU PRO MET GLN GLU ILE TYR TRP TRP SEQRES 16 A 229 SER TRP VAL TYR PHE PHE SER PHE ILE ILE ILE CYS SER SEQRES 17 A 229 ILE THR ILE LEU ASN LEU VAL ILE ALA ILE LEU VAL ASP SEQRES 18 A 229 VAL VAL ILE GLN LYS LYS LEU GLU SEQRES 1 B 229 MET THR PRO PHE PHE SER SER LEU LYS ASP ASN ARG ILE SEQRES 2 B 229 PHE GLN PHE THR VAL VAL SER ILE ILE ILE LEU ASN ALA SEQRES 3 B 229 VAL LEU ILE GLY ALA THR THR TYR GLU LEU ASP PRO LEU SEQRES 4 B 229 PHE LEU GLU THR ILE HIS LEU LEU ASP TYR GLY ILE THR SEQRES 5 B 229 ILE PHE PHE VAL ILE GLU ILE LEU ILE ARG PHE ILE GLY SEQRES 6 B 229 GLU LYS GLN LYS ALA ASP PHE PHE LYS SER GLY TRP ASN SEQRES 7 B 229 ILE PHE ASP THR VAL ILE VAL ALA ILE SER LEU ILE PRO SEQRES 8 B 229 ILE PRO ASN ASN SER SER PHE LEU VAL LEU ARG LEU LEU SEQRES 9 B 229 ARG ILE PHE ARG VAL LEU ARG LEU ILE SER VAL ILE PRO SEQRES 10 B 229 GLU LEU LYS GLN ILE ILE GLU ALA ILE LEU GLU SER VAL SEQRES 11 B 229 ARG ARG VAL PHE PHE VAL SER LEU LEU LEU PHE ILE ILE SEQRES 12 B 229 LEU TYR ILE TYR ALA THR MET GLY ALA ILE LEU PHE GLY SEQRES 13 B 229 ASN ASP ASP PRO SER ARG TRP GLY ASP LEU GLY ILE SER SEQRES 14 B 229 LEU ILE THR LEU PHE GLN VAL LEU THR LEU SER SER TRP SEQRES 15 B 229 GLU THR VAL MET LEU PRO MET GLN GLU ILE TYR TRP TRP SEQRES 16 B 229 SER TRP VAL TYR PHE PHE SER PHE ILE ILE ILE CYS SER SEQRES 17 B 229 ILE THR ILE LEU ASN LEU VAL ILE ALA ILE LEU VAL ASP SEQRES 18 B 229 VAL VAL ILE GLN LYS LYS LEU GLU SEQRES 1 C 229 MET THR PRO PHE PHE SER SER LEU LYS ASP ASN ARG ILE SEQRES 2 C 229 PHE GLN PHE THR VAL VAL SER ILE ILE ILE LEU ASN ALA SEQRES 3 C 229 VAL LEU ILE GLY ALA THR THR TYR GLU LEU ASP PRO LEU SEQRES 4 C 229 PHE LEU GLU THR ILE HIS LEU LEU ASP TYR GLY ILE THR SEQRES 5 C 229 ILE PHE PHE VAL ILE GLU ILE LEU ILE ARG PHE ILE GLY SEQRES 6 C 229 GLU LYS GLN LYS ALA ASP PHE PHE LYS SER GLY TRP ASN SEQRES 7 C 229 ILE PHE ASP THR VAL ILE VAL ALA ILE SER LEU ILE PRO SEQRES 8 C 229 ILE PRO ASN ASN SER SER PHE LEU VAL LEU ARG LEU LEU SEQRES 9 C 229 ARG ILE PHE ARG VAL LEU ARG LEU ILE SER VAL ILE PRO SEQRES 10 C 229 GLU LEU LYS GLN ILE ILE GLU ALA ILE LEU GLU SER VAL SEQRES 11 C 229 ARG ARG VAL PHE PHE VAL SER LEU LEU LEU PHE ILE ILE SEQRES 12 C 229 LEU TYR ILE TYR ALA THR MET GLY ALA ILE LEU PHE GLY SEQRES 13 C 229 ASN ASP ASP PRO SER ARG TRP GLY ASP LEU GLY ILE SER SEQRES 14 C 229 LEU ILE THR LEU PHE GLN VAL LEU THR LEU SER SER TRP SEQRES 15 C 229 GLU THR VAL MET LEU PRO MET GLN GLU ILE TYR TRP TRP SEQRES 16 C 229 SER TRP VAL TYR PHE PHE SER PHE ILE ILE ILE CYS SER SEQRES 17 C 229 ILE THR ILE LEU ASN LEU VAL ILE ALA ILE LEU VAL ASP SEQRES 18 C 229 VAL VAL ILE GLN LYS LYS LEU GLU SEQRES 1 D 229 MET THR PRO PHE PHE SER SER LEU LYS ASP ASN ARG ILE SEQRES 2 D 229 PHE GLN PHE THR VAL VAL SER ILE ILE ILE LEU ASN ALA SEQRES 3 D 229 VAL LEU ILE GLY ALA THR THR TYR GLU LEU ASP PRO LEU SEQRES 4 D 229 PHE LEU GLU THR ILE HIS LEU LEU ASP TYR GLY ILE THR SEQRES 5 D 229 ILE PHE PHE VAL ILE GLU ILE LEU ILE ARG PHE ILE GLY SEQRES 6 D 229 GLU LYS GLN LYS ALA ASP PHE PHE LYS SER GLY TRP ASN SEQRES 7 D 229 ILE PHE ASP THR VAL ILE VAL ALA ILE SER LEU ILE PRO SEQRES 8 D 229 ILE PRO ASN ASN SER SER PHE LEU VAL LEU ARG LEU LEU SEQRES 9 D 229 ARG ILE PHE ARG VAL LEU ARG LEU ILE SER VAL ILE PRO SEQRES 10 D 229 GLU LEU LYS GLN ILE ILE GLU ALA ILE LEU GLU SER VAL SEQRES 11 D 229 ARG ARG VAL PHE PHE VAL SER LEU LEU LEU PHE ILE ILE SEQRES 12 D 229 LEU TYR ILE TYR ALA THR MET GLY ALA ILE LEU PHE GLY SEQRES 13 D 229 ASN ASP ASP PRO SER ARG TRP GLY ASP LEU GLY ILE SER SEQRES 14 D 229 LEU ILE THR LEU PHE GLN VAL LEU THR LEU SER SER TRP SEQRES 15 D 229 GLU THR VAL MET LEU PRO MET GLN GLU ILE TYR TRP TRP SEQRES 16 D 229 SER TRP VAL TYR PHE PHE SER PHE ILE ILE ILE CYS SER SEQRES 17 D 229 ILE THR ILE LEU ASN LEU VAL ILE ALA ILE LEU VAL ASP SEQRES 18 D 229 VAL VAL ILE GLN LYS LYS LEU GLU HET BNG A 301 21 HET BNG A 302 21 HET CA A 303 1 HET PX4 B 301 35 HET CA B 302 1 HET BNG C 301 21 HET BNG C 302 21 HETNAM BNG NONYL BETA-D-GLUCOPYRANOSIDE HETNAM CA CALCIUM ION HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETSYN BNG BETA-NONYLGLUCOSIDE; NONYL BETA-D-GLUCOSIDE; NONYL D- HETSYN 2 BNG GLUCOSIDE; NONYL GLUCOSIDE FORMUL 5 BNG 4(C15 H30 O6) FORMUL 7 CA 2(CA 2+) FORMUL 8 PX4 C36 H73 N O8 P 1+ FORMUL 12 HOH *6(H2 O) HELIX 1 1 ASN A 11 LEU A 28 1 18 HELIX 2 2 ASP A 37 GLY A 65 1 29 HELIX 3 3 GLY A 76 SER A 88 1 13 HELIX 4 4 LEU A 103 LEU A 110 1 8 HELIX 5 5 ARG A 111 ILE A 116 1 6 HELIX 6 6 ILE A 116 PHE A 155 1 40 HELIX 7 7 ASP A 165 THR A 178 1 14 HELIX 8 8 TRP A 182 GLU A 191 1 10 HELIX 9 9 TRP A 195 GLN A 225 1 31 HELIX 10 10 SER B 7 ASP B 10 5 4 HELIX 11 11 ASN B 11 LEU B 28 1 18 HELIX 12 12 ASP B 37 GLU B 66 1 30 HELIX 13 13 GLY B 76 LEU B 89 1 14 HELIX 14 14 VAL B 100 VAL B 115 1 16 HELIX 15 15 ILE B 116 PHE B 155 1 40 HELIX 16 16 ASP B 159 GLY B 164 1 6 HELIX 17 17 ASP B 165 THR B 178 1 14 HELIX 18 18 TRP B 182 GLU B 191 1 10 HELIX 19 19 TRP B 195 GLN B 225 1 31 HELIX 20 20 ASN C 11 LEU C 28 1 18 HELIX 21 21 ASP C 37 ILE C 59 1 23 HELIX 22 22 TRP C 77 ILE C 90 1 14 HELIX 23 23 PHE C 98 ILE C 116 1 19 HELIX 24 24 PRO C 117 GLY C 156 1 40 HELIX 25 25 ASP C 159 GLY C 164 1 6 HELIX 26 26 ASP C 165 THR C 178 1 14 HELIX 27 27 TRP C 182 GLU C 191 1 10 HELIX 28 28 TRP C 195 GLN C 225 1 31 HELIX 29 29 PHE D 16 ASN D 25 1 10 HELIX 30 30 LEU D 39 ILE D 59 1 21 HELIX 31 31 TRP D 77 SER D 88 1 12 HELIX 32 32 VAL D 100 ILE D 116 1 17 HELIX 33 33 ILE D 116 GLY D 156 1 41 HELIX 34 34 ASP D 159 GLY D 164 1 6 HELIX 35 35 ASP D 165 THR D 178 1 14 HELIX 36 36 TRP D 182 TYR D 193 1 12 HELIX 37 37 TRP D 195 LYS D 227 1 33 LINK O LYS A 226 CA CA A 303 1555 1555 3.00 LINK O HOH A 401 CA CA B 302 1555 1555 2.45 LINK O HOH A 402 CA CA B 302 1555 1555 2.30 LINK O HOH A 403 CA CA B 302 1555 1555 2.34 LINK CA CA B 302 O HOH B 401 1555 1555 2.11 LINK CA CA B 302 O HOH C 401 1555 1555 2.36 LINK CA CA B 302 O HOH C 402 1555 1555 2.52 CISPEP 1 ILE A 29 GLY A 30 0 6.11 CISPEP 2 ILE B 29 GLY B 30 0 1.80 CISPEP 3 PHE B 98 LEU B 99 0 2.36 CISPEP 4 ILE C 29 GLY C 30 0 -5.30 CRYST1 163.437 163.437 61.071 90.00 90.00 90.00 P 42 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006119 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016374 0.00000