PDB Short entry for 4DYW HEADER HYDROLASE 29-FEB-12 4DYW TITLE CRYSTAL STRUCTURE OF MUTT NUDIX HYDROLASE FROM BURKHOLDERIA TITLE 2 PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTT/NUDIX FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: BURPS1710B_0547; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, MUTT, NUDIX HYDROLASE, NUCLEOTIDE KEYWDS 4 DIPHOSPHATE X HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-SEP-23 4DYW 1 SEQADV REVDAT 1 11-APR-12 4DYW 0 JRNL AUTH T.E.EDWARDS,M.C.CLIFTON, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF MUTT NUDIX HYDROLASE FROM BURKHOLDERIA JRNL TITL 2 PSEUDOMALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 779 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1949 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99000 REMARK 3 B22 (A**2) : 1.99000 REMARK 3 B33 (A**2) : -3.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.374 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.400 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1997 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1326 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2731 ; 1.421 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3225 ; 1.134 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 5.961 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;31.939 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 295 ;14.192 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.939 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2263 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 402 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 0 A 5 A 133 0 REMARK 3 0 B 5 B 133 0 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 133 REMARK 3 RESIDUE RANGE : A 201 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4438 -15.2313 14.1893 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.0802 REMARK 3 T33: 0.0268 T12: -0.0396 REMARK 3 T13: -0.0047 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.1861 L22: 0.1799 REMARK 3 L33: 3.2630 L12: -0.0309 REMARK 3 L13: -0.4801 L23: -0.5013 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0086 S13: -0.0382 REMARK 3 S21: 0.0170 S22: -0.0276 S23: 0.0255 REMARK 3 S31: 0.0263 S32: -0.0384 S33: 0.0447 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 133 REMARK 3 RESIDUE RANGE : B 201 B 226 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7345 -14.6136 -14.0750 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.0677 REMARK 3 T33: 0.0348 T12: 0.0161 REMARK 3 T13: -0.0015 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.8406 L22: 0.1806 REMARK 3 L33: 3.9094 L12: 0.3826 REMARK 3 L13: 0.7639 L23: 0.4861 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: -0.0414 S13: 0.0045 REMARK 3 S21: 0.0112 S22: -0.0337 S23: 0.0046 REMARK 3 S31: -0.0351 S32: -0.1557 S33: 0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4DYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976484 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12669 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 3HHJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUPSA.00264.A.A1 PS01261 AT 27 MG/ML REMARK 280 AGAINST 0.2 M NAK TARTRATE, 30% PEG 3350 PACT E9 FOCUS SCREEN REMARK 280 WITH 20% ETHYLENE GLYCOL AS CRO-PROTECTANT, CRYSTAL TRACKING ID REMARK 280 230892E11, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.96000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.02000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.44000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.02000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.48000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.02000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.02000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.44000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.02000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.02000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.48000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.96000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 HIS A 3 REMARK 465 THR A 4 REMARK 465 ARG A 134 REMARK 465 ALA A 135 REMARK 465 ALA A 136 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 HIS B 3 REMARK 465 THR B 4 REMARK 465 ARG B 134 REMARK 465 ALA B 135 REMARK 465 ALA B 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 VAL A 132 CG1 CG2 REMARK 470 THR A 133 OG1 CG2 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 104 CG OD1 OD2 REMARK 470 THR B 133 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 116 52.01 -143.64 REMARK 500 ASP B 116 52.73 -142.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HHJ RELATED DB: PDB REMARK 900 MUTT FROM BARTONELLA HENSELAE REMARK 900 RELATED ID: SSGCID-BUPSA.00264.A RELATED DB: TARGETTRACK DBREF 4DYW A 1 136 UNP Q3JWU2 Q3JWU2_BURP1 1 136 DBREF 4DYW B 1 136 UNP Q3JWU2 Q3JWU2_BURP1 1 136 SEQADV 4DYW MET A -20 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW ALA A -19 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS A -18 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS A -17 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS A -16 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS A -15 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS A -14 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS A -13 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW MET A -12 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLY A -11 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW THR A -10 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW LEU A -9 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLU A -8 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW ALA A -7 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLN A -6 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW THR A -5 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLN A -4 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLY A -3 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW PRO A -2 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLY A -1 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW SER A 0 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW MET B -20 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW ALA B -19 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS B -18 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS B -17 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS B -16 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS B -15 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS B -14 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW HIS B -13 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW MET B -12 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLY B -11 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW THR B -10 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW LEU B -9 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLU B -8 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW ALA B -7 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLN B -6 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW THR B -5 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLN B -4 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLY B -3 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW PRO B -2 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW GLY B -1 UNP Q3JWU2 EXPRESSION TAG SEQADV 4DYW SER B 0 UNP Q3JWU2 EXPRESSION TAG SEQRES 1 A 157 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 157 ALA GLN THR GLN GLY PRO GLY SER MET GLN HIS THR GLU SEQRES 3 A 157 GLN PRO ARG VAL GLY CYS GLY ALA ALA ILE VAL ARG ASP SEQRES 4 A 157 GLY ARG ILE LEU LEU ILE LYS ARG LYS ARG ALA PRO GLU SEQRES 5 A 157 ALA GLY CYS TRP GLY LEU PRO GLY GLY LYS VAL ASP TRP SEQRES 6 A 157 LEU GLU PRO VAL GLU ARG ALA VAL CYS ARG GLU ILE GLU SEQRES 7 A 157 GLU GLU LEU GLY ILE ALA LEU GLU ARG ALA THR LEU LEU SEQRES 8 A 157 CYS VAL VAL ASP HIS ILE ASP ALA ALA ASN GLY GLU HIS SEQRES 9 A 157 TRP VAL ALA PRO VAL TYR LEU ALA HIS ALA PHE SER GLY SEQRES 10 A 157 GLU PRO ARG VAL VAL GLU PRO ASP ARG HIS GLU ALA LEU SEQRES 11 A 157 GLY TRP PHE ALA LEU ASP ASP LEU PRO GLN PRO LEU THR SEQRES 12 A 157 HIS ALA THR ARG ILE ALA LEU GLU GLN VAL THR ARG ALA SEQRES 13 A 157 ALA SEQRES 1 B 157 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 157 ALA GLN THR GLN GLY PRO GLY SER MET GLN HIS THR GLU SEQRES 3 B 157 GLN PRO ARG VAL GLY CYS GLY ALA ALA ILE VAL ARG ASP SEQRES 4 B 157 GLY ARG ILE LEU LEU ILE LYS ARG LYS ARG ALA PRO GLU SEQRES 5 B 157 ALA GLY CYS TRP GLY LEU PRO GLY GLY LYS VAL ASP TRP SEQRES 6 B 157 LEU GLU PRO VAL GLU ARG ALA VAL CYS ARG GLU ILE GLU SEQRES 7 B 157 GLU GLU LEU GLY ILE ALA LEU GLU ARG ALA THR LEU LEU SEQRES 8 B 157 CYS VAL VAL ASP HIS ILE ASP ALA ALA ASN GLY GLU HIS SEQRES 9 B 157 TRP VAL ALA PRO VAL TYR LEU ALA HIS ALA PHE SER GLY SEQRES 10 B 157 GLU PRO ARG VAL VAL GLU PRO ASP ARG HIS GLU ALA LEU SEQRES 11 B 157 GLY TRP PHE ALA LEU ASP ASP LEU PRO GLN PRO LEU THR SEQRES 12 B 157 HIS ALA THR ARG ILE ALA LEU GLU GLN VAL THR ARG ALA SEQRES 13 B 157 ALA FORMUL 3 HOH *54(H2 O) HELIX 1 1 PRO A 47 GLY A 61 1 15 HELIX 2 2 THR A 122 THR A 133 1 12 HELIX 3 3 PRO B 47 GLY B 61 1 15 HELIX 4 4 THR B 122 THR B 133 1 12 SHEET 1 A 5 TRP A 35 GLY A 36 0 SHEET 2 A 5 ARG A 20 ARG A 26 -1 N ILE A 24 O GLY A 36 SHEET 3 A 5 ARG A 8 ARG A 17 -1 N ILE A 15 O LEU A 22 SHEET 4 A 5 GLU A 82 ALA A 91 1 O HIS A 83 N ARG A 8 SHEET 5 A 5 THR A 68 ASP A 77 -1 N HIS A 75 O TRP A 84 SHEET 1 B 4 GLY A 39 LYS A 41 0 SHEET 2 B 4 ARG A 8 ARG A 17 -1 N CYS A 11 O GLY A 40 SHEET 3 B 4 ARG A 20 ARG A 26 -1 O LEU A 22 N ILE A 15 SHEET 4 B 4 HIS A 106 ALA A 113 -1 O PHE A 112 N ILE A 21 SHEET 1 C 2 ALA A 63 GLU A 65 0 SHEET 2 C 2 ALA A 93 SER A 95 -1 O ALA A 93 N GLU A 65 SHEET 1 D 5 TRP B 35 GLY B 36 0 SHEET 2 D 5 ARG B 20 ARG B 26 -1 N ILE B 24 O GLY B 36 SHEET 3 D 5 ARG B 8 ARG B 17 -1 N ILE B 15 O LEU B 22 SHEET 4 D 5 GLU B 82 ALA B 91 1 O HIS B 83 N ARG B 8 SHEET 5 D 5 THR B 68 ASP B 77 -1 N HIS B 75 O TRP B 84 SHEET 1 E 4 GLY B 39 LYS B 41 0 SHEET 2 E 4 ARG B 8 ARG B 17 -1 N CYS B 11 O GLY B 40 SHEET 3 E 4 ARG B 20 ARG B 26 -1 O LEU B 22 N ILE B 15 SHEET 4 E 4 HIS B 106 ALA B 113 -1 O PHE B 112 N ILE B 21 SHEET 1 F 2 ALA B 63 GLU B 65 0 SHEET 2 F 2 ALA B 93 SER B 95 -1 O ALA B 93 N GLU B 65 CISPEP 1 ALA A 29 PRO A 30 0 -6.31 CISPEP 2 GLN A 119 PRO A 120 0 -10.72 CISPEP 3 ALA B 29 PRO B 30 0 -6.59 CISPEP 4 GLN B 119 PRO B 120 0 -9.31 CRYST1 78.040 78.040 113.920 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008778 0.00000