PDB Short entry for 4ED5 HEADER RNA BINDING PROTEIN/RNA 27-MAR-12 4ED5 TITLE CRYSTAL STRUCTURE OF THE TWO N-TERMINAL RRM DOMAINS OF HUR COMPLEXED TITLE 2 WITH RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELAV-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RRM1/RRM2 DOMAINS, UNP RESIDUES 18-186; COMPND 5 SYNONYM: HU-ANTIGEN R, HUR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-R(*A*UP*UP*UP*UP*UP*AP*UP*UP*UP*U)-3'; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ELAVL1, HUR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS RRM, RNA BINDING, NUCLEUS, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,F.ZENG,Q.LIU,L.NIU,M.TENG,X.LI REVDAT 3 20-MAR-24 4ED5 1 REMARK SEQADV REVDAT 2 10-APR-13 4ED5 1 JRNL REVDAT 1 23-MAY-12 4ED5 0 JRNL AUTH H.WANG,F.ZENG,Q.LIU,H.LIU,Z.LIU,L.NIU,M.TENG,X.LI JRNL TITL THE STRUCTURE OF THE ARE-BINDING DOMAINS OF HU ANTIGEN R JRNL TITL 2 (HUR) UNDERGOES CONFORMATIONAL CHANGES DURING RNA BINDING. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 373 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23519412 JRNL DOI 10.1107/S0907444912047828 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 26384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1393 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1942 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2526 REMARK 3 NUCLEIC ACID ATOMS : 349 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.15000 REMARK 3 B22 (A**2) : 2.11000 REMARK 3 B33 (A**2) : -1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.318 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3035 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4151 ; 1.217 ; 2.121 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 5.385 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;32.968 ;22.762 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 435 ;13.109 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.675 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2106 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1689 ; 0.416 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2705 ; 0.800 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1346 ; 1.507 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1446 ; 2.517 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8556 -1.1936 -4.5015 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.0994 REMARK 3 T33: 0.1499 T12: -0.0011 REMARK 3 T13: -0.0129 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.5405 L22: 0.1219 REMARK 3 L33: 1.5511 L12: -0.1034 REMARK 3 L13: -0.3070 L23: -0.0270 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: 0.0176 S13: -0.0037 REMARK 3 S21: 0.0312 S22: 0.0128 S23: -0.0014 REMARK 3 S31: 0.0103 S32: 0.0527 S33: -0.0270 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): -44.4542 0.4721 -20.9817 REMARK 3 T TENSOR REMARK 3 T11: 0.1063 T22: 0.1695 REMARK 3 T33: 0.1495 T12: 0.0356 REMARK 3 T13: 0.0125 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.0883 L22: 0.1743 REMARK 3 L33: 4.2709 L12: -0.0283 REMARK 3 L13: 0.3244 L23: 0.0954 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: 0.2869 S13: 0.0389 REMARK 3 S21: 0.0214 S22: -0.0231 S23: -0.0103 REMARK 3 S31: -0.0301 S32: -0.3691 S33: -0.0127 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 11 REMARK 3 ORIGIN FOR THE GROUP (A): -42.8444 -6.3734 -21.9508 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: 0.0902 REMARK 3 T33: 0.0454 T12: -0.0625 REMARK 3 T13: 0.0588 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 14.6682 L22: 1.9439 REMARK 3 L33: 7.6362 L12: -1.9251 REMARK 3 L13: -1.4653 L23: 3.7514 REMARK 3 S TENSOR REMARK 3 S11: -0.1741 S12: 0.3790 S13: -0.5320 REMARK 3 S21: 0.6175 S22: -0.2868 S23: 0.2536 REMARK 3 S31: 1.2644 S32: -0.5808 S33: 0.4608 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 11 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3048 -8.0399 -4.4849 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.0643 REMARK 3 T33: 0.1059 T12: 0.0145 REMARK 3 T13: 0.0289 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 12.8439 L22: 1.3730 REMARK 3 L33: 7.0924 L12: -0.1202 REMARK 3 L13: -9.1544 L23: 0.9660 REMARK 3 S TENSOR REMARK 3 S11: -0.6021 S12: -0.2398 S13: -0.8435 REMARK 3 S21: -0.1607 S22: 0.0920 S23: -0.1848 REMARK 3 S31: 0.3488 S32: 0.1920 S33: 0.5100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ED5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27777 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : 0.22600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 5000, 0.1M HEPES, PH7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.38500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.38500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 186 REMARK 465 LEU A 187 REMARK 465 GLU A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 LEU B 187 REMARK 465 GLU B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 A C 1 REMARK 465 A D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 34 OD2 REMARK 470 ARG A 37 CZ NH1 NH2 REMARK 470 LYS A 50 CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 SER A 88 OG REMARK 470 LYS A 120 CE NZ REMARK 470 ILE A 152 CD1 REMARK 470 GLN B 29 CG CD OE1 NE2 REMARK 470 ASN B 30 CG OD1 ND2 REMARK 470 THR B 32 OG1 CG2 REMARK 470 ASP B 34 CB CG OD1 OD2 REMARK 470 GLU B 35 OE2 REMARK 470 ARG B 37 NH1 NH2 REMARK 470 GLU B 45 CB CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 VAL B 69 CG1 CG2 REMARK 470 THR B 70 OG1 CG2 REMARK 470 LYS B 72 CB CG CD CE NZ REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 ARG B 76 CB CG CD NE CZ NH1 NH2 REMARK 470 THR B 80 CG2 REMARK 470 SER B 88 OG REMARK 470 ILE B 91 CD1 REMARK 470 THR B 116 OG1 CG2 REMARK 470 GLN B 119 OE1 NE2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 ASN B 134 OD1 ND2 REMARK 470 ARG B 136 NE CZ NH1 NH2 REMARK 470 VAL B 139 CG1 REMARK 470 ASP B 140 CG OD1 OD2 REMARK 470 THR B 142 CG2 REMARK 470 THR B 143 CG2 REMARK 470 GLU B 162 OE2 REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 470 ASN B 186 C O OD1 REMARK 470 U C 2 P OP1 OP2 O5' C5' C4' O4' REMARK 470 U C 2 C3' C2' O2' C1' N1 C2 O2 REMARK 470 U C 2 N3 C4 O4 C5 C6 REMARK 470 U C 11 O2' N1 C2 O2 N3 C4 O4 REMARK 470 U C 11 C5 C6 REMARK 470 U D 2 P OP1 OP2 O5' C5' C4' O4' REMARK 470 U D 2 C3' O3' C2' O2' C1' N1 C2 REMARK 470 U D 2 O2 N3 C5 C6 REMARK 470 U D 11 O2' N1 C2 O2 N3 C4 O4 REMARK 470 U D 11 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 U D 2 P U D 3 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U D 2 C4 U D 2 O4 0.215 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 87 -122.15 54.74 REMARK 500 ASP B 105 56.97 -107.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M2M A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 102 DBREF 4ED5 A 18 186 UNP Q15717 ELAV1_HUMAN 18 186 DBREF 4ED5 B 18 186 UNP Q15717 ELAV1_HUMAN 18 186 DBREF 4ED5 C 1 11 PDB 4ED5 4ED5 1 11 DBREF 4ED5 D 1 11 PDB 4ED5 4ED5 1 11 SEQADV 4ED5 LEU A 187 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 GLU A 188 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS A 189 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS A 190 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS A 191 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS A 192 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS A 193 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS A 194 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 LEU B 187 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 GLU B 188 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS B 189 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS B 190 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS B 191 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS B 192 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS B 193 UNP Q15717 EXPRESSION TAG SEQADV 4ED5 HIS B 194 UNP Q15717 EXPRESSION TAG SEQRES 1 A 177 GLY ARG THR ASN LEU ILE VAL ASN TYR LEU PRO GLN ASN SEQRES 2 A 177 MET THR GLN ASP GLU LEU ARG SER LEU PHE SER SER ILE SEQRES 3 A 177 GLY GLU VAL GLU SER ALA LYS LEU ILE ARG ASP LYS VAL SEQRES 4 A 177 ALA GLY HIS SER LEU GLY TYR GLY PHE VAL ASN TYR VAL SEQRES 5 A 177 THR ALA LYS ASP ALA GLU ARG ALA ILE ASN THR LEU ASN SEQRES 6 A 177 GLY LEU ARG LEU GLN SER LYS THR ILE LYS VAL SER TYR SEQRES 7 A 177 ALA ARG PRO SER SER GLU VAL ILE LYS ASP ALA ASN LEU SEQRES 8 A 177 TYR ILE SER GLY LEU PRO ARG THR MET THR GLN LYS ASP SEQRES 9 A 177 VAL GLU ASP MET PHE SER ARG PHE GLY ARG ILE ILE ASN SEQRES 10 A 177 SER ARG VAL LEU VAL ASP GLN THR THR GLY LEU SER ARG SEQRES 11 A 177 GLY VAL ALA PHE ILE ARG PHE ASP LYS ARG SER GLU ALA SEQRES 12 A 177 GLU GLU ALA ILE THR SER PHE ASN GLY HIS LYS PRO PRO SEQRES 13 A 177 GLY SER SER GLU PRO ILE THR VAL LYS PHE ALA ALA ASN SEQRES 14 A 177 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 177 GLY ARG THR ASN LEU ILE VAL ASN TYR LEU PRO GLN ASN SEQRES 2 B 177 MET THR GLN ASP GLU LEU ARG SER LEU PHE SER SER ILE SEQRES 3 B 177 GLY GLU VAL GLU SER ALA LYS LEU ILE ARG ASP LYS VAL SEQRES 4 B 177 ALA GLY HIS SER LEU GLY TYR GLY PHE VAL ASN TYR VAL SEQRES 5 B 177 THR ALA LYS ASP ALA GLU ARG ALA ILE ASN THR LEU ASN SEQRES 6 B 177 GLY LEU ARG LEU GLN SER LYS THR ILE LYS VAL SER TYR SEQRES 7 B 177 ALA ARG PRO SER SER GLU VAL ILE LYS ASP ALA ASN LEU SEQRES 8 B 177 TYR ILE SER GLY LEU PRO ARG THR MET THR GLN LYS ASP SEQRES 9 B 177 VAL GLU ASP MET PHE SER ARG PHE GLY ARG ILE ILE ASN SEQRES 10 B 177 SER ARG VAL LEU VAL ASP GLN THR THR GLY LEU SER ARG SEQRES 11 B 177 GLY VAL ALA PHE ILE ARG PHE ASP LYS ARG SER GLU ALA SEQRES 12 B 177 GLU GLU ALA ILE THR SER PHE ASN GLY HIS LYS PRO PRO SEQRES 13 B 177 GLY SER SER GLU PRO ILE THR VAL LYS PHE ALA ALA ASN SEQRES 14 B 177 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 11 A U U U U U A U U U U SEQRES 1 D 11 A U U U U U A U U U U HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HET GOL A 204 6 HET GOL A 205 6 HET M2M A 206 9 HET EDO A 207 4 HET EDO A 208 4 HET GOL D 101 6 HET GOL D 102 6 HETNAM GOL GLYCEROL HETNAM M2M 1-METHOXY-2-(2-METHOXYETHOXY)ETHANE HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 GOL 7(C3 H8 O3) FORMUL 10 M2M C6 H14 O3 FORMUL 11 EDO 2(C2 H6 O2) FORMUL 15 HOH *252(H2 O) HELIX 1 1 THR A 32 SER A 42 1 11 HELIX 2 2 THR A 70 ASN A 82 1 13 HELIX 3 3 SER A 100 LYS A 104 5 5 HELIX 4 4 THR A 118 SER A 127 1 10 HELIX 5 5 ARG A 128 GLY A 130 5 3 HELIX 6 6 LYS A 156 ASN A 168 1 13 HELIX 7 7 THR B 32 SER B 42 1 11 HELIX 8 8 THR B 70 ASN B 82 1 13 HELIX 9 9 THR B 118 SER B 127 1 10 HELIX 10 10 ARG B 128 GLY B 130 5 3 HELIX 11 11 LYS B 156 ASN B 168 1 13 SHEET 1 A 4 VAL A 46 ARG A 53 0 SHEET 2 A 4 SER A 60 TYR A 68 -1 O ASN A 67 N SER A 48 SHEET 3 A 4 ASN A 21 ASN A 25 -1 N VAL A 24 O GLY A 64 SHEET 4 A 4 LYS A 92 TYR A 95 -1 O SER A 94 N ILE A 23 SHEET 1 B 2 ARG A 85 LEU A 86 0 SHEET 2 B 2 LYS A 89 THR A 90 -1 O LYS A 89 N LEU A 86 SHEET 1 C 4 ILE A 132 VAL A 139 0 SHEET 2 C 4 SER A 146 PHE A 154 -1 O ARG A 147 N LEU A 138 SHEET 3 C 4 ASN A 107 SER A 111 -1 N ILE A 110 O ALA A 150 SHEET 4 C 4 THR A 180 PHE A 183 -1 O LYS A 182 N TYR A 109 SHEET 1 D 4 VAL B 46 ARG B 53 0 SHEET 2 D 4 SER B 60 TYR B 68 -1 O LEU B 61 N ILE B 52 SHEET 3 D 4 ASN B 21 ASN B 25 -1 N VAL B 24 O GLY B 64 SHEET 4 D 4 LYS B 92 TYR B 95 -1 O SER B 94 N ILE B 23 SHEET 1 E 2 ARG B 85 LEU B 86 0 SHEET 2 E 2 LYS B 89 THR B 90 -1 O LYS B 89 N LEU B 86 SHEET 1 F 4 ILE B 132 VAL B 139 0 SHEET 2 F 4 SER B 146 PHE B 154 -1 O ARG B 153 N ILE B 133 SHEET 3 F 4 ASN B 107 SER B 111 -1 N LEU B 108 O ILE B 152 SHEET 4 F 4 THR B 180 PHE B 183 -1 O LYS B 182 N TYR B 109 SITE 1 AC1 10 GLY A 18 THR A 20 VAL A 69 THR A 70 SITE 2 AC1 10 ALA A 71 GLY A 174 SER A 175 SER A 176 SITE 3 AC1 10 HOH A 344 HOH A 404 SITE 1 AC2 6 THR A 118 GLN A 119 VAL A 137 VAL A 139 SITE 2 AC2 6 HOH A 355 HOH A 427 SITE 1 AC3 4 SER A 146 ARG A 147 HOH A 380 HOH A 438 SITE 1 AC4 3 ASN A 21 GLU A 47 ASN A 67 SITE 1 AC5 4 SER A 111 GLU A 177 THR A 180 HOH A 433 SITE 1 AC6 8 ILE A 78 ASN A 82 ILE A 91 LYS A 92 SITE 2 AC6 8 VAL A 93 SER A 94 HOH A 374 U D 5 SITE 1 AC7 5 MET A 117 ASP A 121 HOH A 361 HOH A 424 SITE 2 AC7 5 HIS B 59 SITE 1 AC8 4 TYR A 95 HOH A 327 HOH A 374 HOH A 382 SITE 1 AC9 6 VAL A 139 ARG A 147 U D 3 U D 4 SITE 2 AC9 6 U D 5 HOH D 216 SITE 1 BC1 9 TYR A 26 ASN A 134 ARG A 136 PHE A 151 SITE 2 BC1 9 U D 4 A D 7 HOH D 209 HOH D 210 SITE 3 BC1 9 HOH D 211 CRYST1 136.770 62.750 53.290 90.00 111.89 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007312 0.000000 0.002938 0.00000 SCALE2 0.000000 0.015936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020223 0.00000