PDB Short entry for 4EDW HEADER IMMUNE SYSTEM 27-MAR-12 4EDW TITLE NERVE GROWTH FACTOR IN COMPLEX WITH FAB FROM HUMANIZED VERSION OF TITLE 2 MOUSE MAB 911 (TANEZUMAB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-NERVE GROWTH FACTOR; COMPND 3 CHAIN: V; COMPND 4 SYNONYM: BETA-NGF; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TANEZUMAB FAB LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: TANEZUMAB FAB HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NGF, NGFB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTINE KNOT, IMMUNOGLOBULIN, GROWTH/SURVIVAL FACTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.EIGENBROT,M.ULTSCH REVDAT 3 25-OCT-17 4EDW 1 REMARK REVDAT 2 13-AUG-14 4EDW 1 JRNL REVDAT 1 02-APR-14 4EDW 0 JRNL AUTH S.L.LA PORTE,C.EIGENBROT,M.ULTSCH,W.H.HO,D.FOLETTI,A.FORGIE, JRNL AUTH 2 K.C.LINDQUIST,D.L.SHELTON,J.PONS JRNL TITL GENERATION OF A HIGH-FIDELITY ANTIBODY AGAINST NERVE GROWTH JRNL TITL 2 FACTOR USING LIBRARY SCANNING MUTAGENESIS AND VALIDATION JRNL TITL 3 WITH STRUCTURES OF THE INITIAL AND OPTIMIZED FAB-ANTIGEN JRNL TITL 4 COMPLEXES. JRNL REF MABS V. 6 1059 JRNL REFN ISSN 1942-0862 JRNL PMID 24830649 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 25793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1320 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2464 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4128 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07020 REMARK 3 B22 (A**2) : -29.83520 REMARK 3 B33 (A**2) : 29.90540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.397 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.285 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.534 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.899 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 107 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5740 -26.6370 -39.1470 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.2736 REMARK 3 T33: 0.1634 T12: -0.1373 REMARK 3 T13: -0.0830 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.0696 L22: 3.0207 REMARK 3 L33: 4.8625 L12: 0.8617 REMARK 3 L13: -1.0503 L23: -0.8775 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: 0.1507 S13: 0.0438 REMARK 3 S21: -0.1352 S22: 0.0514 S23: 0.2820 REMARK 3 S31: 0.5347 S32: -0.8387 S33: -0.0224 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 108 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5920 -32.4050 -2.2350 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.1965 REMARK 3 T33: 0.1828 T12: -0.0116 REMARK 3 T13: -0.0176 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 1.3203 L22: 2.1498 REMARK 3 L33: 3.8470 L12: 0.5788 REMARK 3 L13: -0.3375 L23: 0.1171 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: -0.1806 S13: -0.1086 REMARK 3 S21: -0.0568 S22: 0.0693 S23: 0.0240 REMARK 3 S31: 0.0397 S32: 0.0732 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 112 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2360 -8.0370 -34.7370 REMARK 3 T TENSOR REMARK 3 T11: 0.2510 T22: 0.1291 REMARK 3 T33: 0.1624 T12: -0.0057 REMARK 3 T13: -0.0152 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 0.1129 L22: 1.4743 REMARK 3 L33: 6.4524 L12: -0.1342 REMARK 3 L13: 0.0495 L23: 0.9389 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: 0.0239 S13: 0.1033 REMARK 3 S21: -0.0057 S22: 0.1836 S23: -0.0455 REMARK 3 S31: -0.9023 S32: 0.0601 S33: -0.1308 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 113 H 213 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7010 -23.5560 -8.7280 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.1752 REMARK 3 T33: 0.1346 T12: -0.0352 REMARK 3 T13: -0.0198 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 3.7643 L22: 2.4666 REMARK 3 L33: 4.6452 L12: -0.2092 REMARK 3 L13: -0.0201 L23: -0.9222 REMARK 3 S TENSOR REMARK 3 S11: 0.0970 S12: 0.0342 S13: -0.2563 REMARK 3 S21: 0.1975 S22: -0.2019 S23: -0.2174 REMARK 3 S31: 0.0336 S32: 0.2495 S33: 0.1049 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : V 10 V 115 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4100 -12.9450 -62.9920 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.2978 REMARK 3 T33: 0.1768 T12: -0.0466 REMARK 3 T13: -0.0127 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.5288 L22: 4.1246 REMARK 3 L33: 3.7432 L12: 1.8341 REMARK 3 L13: -0.5120 L23: -0.6595 REMARK 3 S TENSOR REMARK 3 S11: 0.1362 S12: -0.1955 S13: 0.0244 REMARK 3 S21: 0.0230 S22: -0.1382 S23: -0.0090 REMARK 3 S31: -0.1707 S32: 0.5942 S33: 0.0020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25872 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 5000 MONOMETHYLETHER, GLYCEROL, REMARK 280 SODIUM CACODYLATE, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.36450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 126.36450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.35350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.35350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 126.36450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.35000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.35350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 126.36450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.35000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.35350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: V, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER V 1 REMARK 465 SER V 2 REMARK 465 SER V 3 REMARK 465 HIS V 4 REMARK 465 PRO V 5 REMARK 465 ILE V 6 REMARK 465 PHE V 7 REMARK 465 PRO V 63 REMARK 465 SER V 66 REMARK 465 ALA V 116 REMARK 465 VAL V 117 REMARK 465 ARG V 118 REMARK 465 ARG V 119 REMARK 465 ALA V 120 REMARK 465 ARG H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLU H 133 REMARK 465 SER H 134 REMARK 465 LYS H 214 REMARK 465 THR H 215 REMARK 465 SER H 216 REMARK 465 HIS H 217 REMARK 465 HIS H 218 REMARK 465 HIS H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 GLY H 223 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET V 37 SD CE REMARK 480 LYS H 201 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN V 45 -33.52 -28.07 REMARK 500 ASP V 60 -56.84 -11.12 REMARK 500 SER L 30 -100.21 49.08 REMARK 500 THR L 51 -45.37 63.09 REMARK 500 SER L 67 145.74 -173.45 REMARK 500 ASN L 138 73.01 38.49 REMARK 500 LYS L 169 -63.10 -108.76 REMARK 500 SER H 15 -9.98 85.35 REMARK 500 LYS H 64 -53.20 -20.73 REMARK 500 TYR H 99 -160.58 60.53 REMARK 500 PHE H 189 -125.32 -84.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EDX RELATED DB: PDB DBREF 4EDW V 1 120 UNP P01138 NGF_HUMAN 122 241 DBREF 4EDW L 1 214 PDB 4EDW 4EDW 1 214 DBREF 4EDW H 1 223 PDB 4EDW 4EDW 1 223 SEQRES 1 V 120 SER SER SER HIS PRO ILE PHE HIS ARG GLY GLU PHE SER SEQRES 2 V 120 VAL CYS ASP SER VAL SER VAL TRP VAL GLY ASP LYS THR SEQRES 3 V 120 THR ALA THR ASP ILE LYS GLY LYS GLU VAL MET VAL LEU SEQRES 4 V 120 GLY GLU VAL ASN ILE ASN ASN SER VAL PHE LYS GLN TYR SEQRES 5 V 120 PHE PHE GLU THR LYS CYS ARG ASP PRO ASN PRO VAL ASP SEQRES 6 V 120 SER GLY CYS ARG GLY ILE ASP SER LYS HIS TRP ASN SER SEQRES 7 V 120 TYR CYS THR THR THR HIS THR PHE VAL LYS ALA LEU THR SEQRES 8 V 120 MET ASP GLY LYS GLN ALA ALA TRP ARG PHE ILE ARG ILE SEQRES 9 V 120 ASP THR ALA CYS VAL CYS VAL LEU SER ARG LYS ALA VAL SEQRES 10 V 120 ARG ARG ALA SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN SER ILE SER ASN ASN LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 L 214 ARG PHE HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN GLU SEQRES 8 L 214 HIS THR LEU PRO TYR THR PHE GLY GLN GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 231 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 231 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 231 PHE SER LEU ILE GLY TYR ASP LEU ASN TRP ILE ARG GLN SEQRES 4 H 231 PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY ILE ILE TRP SEQRES 5 H 231 GLY ASP GLY THR THR ASP TYR ASN SER ALA VAL LYS SER SEQRES 6 H 231 ARG VAL THR ILE SER LYS ASP THR SER LYS ASN GLN PHE SEQRES 7 H 231 SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR ALA SEQRES 8 H 231 VAL TYR TYR CYS ALA ARG GLY GLY TYR TRP TYR ALA THR SEQRES 9 H 231 SER TYR TYR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 231 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 231 PRO LEU ALA PRO CYS SER ARG SER THR SER GLU SER THR SEQRES 12 H 231 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 231 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 231 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 231 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 231 ASN PHE GLY THR GLN THR TYR THR CYS ASN VAL ASP HIS SEQRES 17 H 231 LYS PRO SER ASN THR LYS VAL ASP LYS THR VAL GLU ARG SEQRES 18 H 231 LYS THR SER HIS HIS HIS HIS HIS HIS GLY HET GOL H 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *37(H2 O) HELIX 1 1 GLN L 79 ILE L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 GLU L 187 1 5 HELIX 4 4 VAL H 63 SER H 65 5 3 HELIX 5 5 THR H 73 LYS H 75 5 3 HELIX 6 6 THR H 83 THR H 87 5 5 HELIX 7 7 LYS H 201 ASN H 204 5 4 SHEET 1 A 2 SER V 17 VAL V 22 0 SHEET 2 A 2 PHE V 53 CYS V 58 -1 O PHE V 53 N VAL V 22 SHEET 1 B 4 THR V 27 THR V 29 0 SHEET 2 B 4 GLU V 35 VAL V 38 -1 O VAL V 36 N ALA V 28 SHEET 3 B 4 TRP V 76 MET V 92 -1 O MET V 92 N MET V 37 SHEET 4 B 4 ALA V 97 ARG V 114 -1 O VAL V 109 N THR V 81 SHEET 1 C 2 GLU V 41 ASN V 43 0 SHEET 2 C 2 VAL V 48 LYS V 50 -1 O PHE V 49 N VAL V 42 SHEET 1 D 4 MET L 4 SER L 7 0 SHEET 2 D 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 D 4 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 D 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 E 6 SER L 10 SER L 14 0 SHEET 2 E 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 E 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 E 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 E 6 PRO L 44 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 E 6 ARG L 53 PHE L 54 -1 O ARG L 53 N TYR L 49 SHEET 1 F 4 SER L 10 SER L 14 0 SHEET 2 F 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 F 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 F 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 G 4 SER L 114 PHE L 118 0 SHEET 2 G 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 G 4 TYR L 173 SER L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 G 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 H 4 ALA L 153 LEU L 154 0 SHEET 2 H 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 H 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 H 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 I 4 GLN H 3 SER H 7 0 SHEET 2 I 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 I 4 GLN H 77 LEU H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 I 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 J 6 LEU H 11 VAL H 12 0 SHEET 2 J 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 J 6 ALA H 88 TRP H 98 -1 N TYR H 90 O THR H 107 SHEET 4 J 6 LEU H 34 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 J 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 J 6 THR H 57 TYR H 59 -1 O ASP H 58 N ILE H 50 SHEET 1 K 4 LEU H 11 VAL H 12 0 SHEET 2 K 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 K 4 ALA H 88 TRP H 98 -1 N TYR H 90 O THR H 107 SHEET 4 K 4 SER H 100B TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 L 4 SER H 120 LEU H 124 0 SHEET 2 L 4 ALA H 136 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 L 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 L 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 M 4 SER H 120 LEU H 124 0 SHEET 2 M 4 ALA H 136 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 M 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 M 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 N 3 THR H 151 TRP H 154 0 SHEET 2 N 3 THR H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 N 3 THR H 205 THR H 210 -1 O LYS H 209 N CYS H 196 SSBOND 1 CYS V 15 CYS V 80 1555 1555 2.05 SSBOND 2 CYS V 58 CYS V 108 1555 1555 2.05 SSBOND 3 CYS V 68 CYS V 110 1555 1555 2.03 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.08 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.02 SSBOND 6 CYS L 214 CYS H 127 1555 1555 2.05 SSBOND 7 CYS H 22 CYS H 92 1555 1555 2.08 SSBOND 8 CYS H 140 CYS H 196 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -3.61 CISPEP 2 LEU L 94 PRO L 95 0 4.61 CISPEP 3 TYR L 140 PRO L 141 0 2.97 CISPEP 4 PHE H 146 PRO H 147 0 -6.22 CISPEP 5 GLU H 148 PRO H 149 0 3.38 SITE 1 AC1 9 PHE H 166 PRO H 167 VAL H 169 SER H 177 SITE 2 AC1 9 LEU H 178 SER H 179 GLN L 160 SER L 176 SITE 3 AC1 9 THR L 178 CRYST1 64.700 92.707 252.729 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015456 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003957 0.00000