PDB Short entry for 4EKI HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-APR-12 4EKI TITLE CRYSTAL STRUCTURE OF DOT1L IN COMPLEX WITH EPZ004777 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-416; COMPND 5 SYNONYM: DOT1-LIKE PROTEIN, HISTONE H3-K79 METHYLTRANSFERASE, H3-K79- COMPND 6 HMTASE, LYSINE N-METHYLTRANSFERASE 4; COMPND 7 EC: 2.1.1.43; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DOT1L, KIAA1814, KMT4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.JIN REVDAT 3 13-SEP-23 4EKI 1 REMARK SEQADV REVDAT 2 09-JAN-13 4EKI 1 JRNL REVDAT 1 17-OCT-12 4EKI 0 JRNL AUTH A.BASAVAPATHRUNI,L.JIN,S.R.DAIGLE,C.R.MAJER,C.A.THERKELSEN, JRNL AUTH 2 T.J.WIGLE,K.W.KUNTZ,R.CHESWORTH,R.M.POLLOCK,M.P.SCOTT, JRNL AUTH 3 M.P.MOYER,V.M.RICHON,R.A.COPELAND,E.J.OLHAVA JRNL TITL CONFORMATIONAL ADAPTATION DRIVES POTENT, SELECTIVE AND JRNL TITL 2 DURABLE INHIBITION OF THE HUMAN PROTEIN METHYLTRANSFERASE JRNL TITL 3 DOT1L. JRNL REF CHEM.BIOL.DRUG DES. V. 80 971 2012 JRNL REFN ISSN 1747-0277 JRNL PMID 22978415 JRNL DOI 10.1111/CBDD.12050 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 785 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.471 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.319 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.244 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.475 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2709 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3674 ; 1.456 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 6.427 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;37.649 ;23.953 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;19.466 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.673 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2042 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4EKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15834 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PHASER REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3QOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 1.8-2.0 M REMARK 280 AMMONIUM SULFATE, 5 MM TCEP, PH 5.2, COMPOUND SOAKED INTO CROSS- REMARK 280 LINKED DOT1L-SAM CRYSTAL, TEMPERATURE 293K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.30133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.15067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.22600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.07533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.37667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 59 REMARK 465 LEU A 60 REMARK 465 ILE A 61 REMARK 465 ASN A 127 REMARK 465 TYR A 128 REMARK 465 GLU A 129 REMARK 465 PRO A 130 REMARK 465 PHE A 131 REMARK 465 ASN A 331 REMARK 465 PRO A 332 REMARK 465 LYS A 333 REMARK 465 LEU A 334 REMARK 465 ARG A 335 REMARK 465 GLU A 336 REMARK 465 GLU A 337 REMARK 465 GLN A 338 REMARK 465 GLU A 339 REMARK 465 ALA A 340 REMARK 465 ALA A 341 REMARK 465 ARG A 342 REMARK 465 ARG A 343 REMARK 465 ARG A 344 REMARK 465 GLN A 345 REMARK 465 GLN A 346 REMARK 465 ARG A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 LYS A 350 REMARK 465 SER A 351 REMARK 465 ASN A 352 REMARK 465 ALA A 353 REMARK 465 ALA A 354 REMARK 465 THR A 355 REMARK 465 PRO A 356 REMARK 465 THR A 357 REMARK 465 LYS A 358 REMARK 465 GLY A 359 REMARK 465 PRO A 360 REMARK 465 GLU A 361 REMARK 465 GLY A 362 REMARK 465 LYS A 363 REMARK 465 VAL A 364 REMARK 465 ALA A 365 REMARK 465 GLY A 366 REMARK 465 PRO A 367 REMARK 465 ALA A 368 REMARK 465 ASP A 369 REMARK 465 ALA A 370 REMARK 465 PRO A 371 REMARK 465 MET A 372 REMARK 465 ASP A 373 REMARK 465 SER A 374 REMARK 465 GLY A 375 REMARK 465 ALA A 376 REMARK 465 GLU A 377 REMARK 465 GLU A 378 REMARK 465 GLU A 379 REMARK 465 LYS A 380 REMARK 465 ALA A 381 REMARK 465 GLY A 382 REMARK 465 ALA A 383 REMARK 465 ALA A 384 REMARK 465 THR A 385 REMARK 465 VAL A 386 REMARK 465 LYS A 387 REMARK 465 LYS A 388 REMARK 465 PRO A 389 REMARK 465 SER A 390 REMARK 465 PRO A 391 REMARK 465 SER A 392 REMARK 465 LYS A 393 REMARK 465 ALA A 394 REMARK 465 ARG A 395 REMARK 465 LYS A 396 REMARK 465 LYS A 397 REMARK 465 LYS A 398 REMARK 465 LEU A 399 REMARK 465 ASN A 400 REMARK 465 LYS A 401 REMARK 465 LYS A 402 REMARK 465 GLY A 403 REMARK 465 ARG A 404 REMARK 465 LYS A 405 REMARK 465 MET A 406 REMARK 465 ALA A 407 REMARK 465 GLY A 408 REMARK 465 ARG A 409 REMARK 465 LYS A 410 REMARK 465 ARG A 411 REMARK 465 GLY A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 LYS A 415 REMARK 465 LYS A 416 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 56 28.17 -60.95 REMARK 500 LEU A 88 -36.84 -36.69 REMARK 500 LYS A 97 117.02 -38.24 REMARK 500 LEU A 98 -89.83 -49.72 REMARK 500 PRO A 122 18.30 -64.14 REMARK 500 LYS A 124 42.81 -66.22 REMARK 500 GLU A 134 69.75 -67.25 REMARK 500 HIS A 181 149.96 -175.20 REMARK 500 LYS A 187 -63.01 -92.62 REMARK 500 SER A 304 64.73 60.23 REMARK 500 ILE A 317 108.80 -57.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0QK A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QOW RELATED DB: PDB REMARK 900 DOT1L STRCUTURE WITH SAM REMARK 900 RELATED ID: 4EK9 RELATED DB: PDB REMARK 900 DOT1L STRUCTURE WITH EPZ000004 REMARK 900 RELATED ID: 4EKG RELATED DB: PDB REMARK 900 DOT1L STRUCTURE WITH EPZ003696 DBREF 4EKI A 1 416 UNP Q8TEK3 DOT1L_HUMAN 1 416 SEQADV 4EKI HIS A -8 UNP Q8TEK3 EXPRESSION TAG SEQADV 4EKI HIS A -7 UNP Q8TEK3 EXPRESSION TAG SEQADV 4EKI HIS A -6 UNP Q8TEK3 EXPRESSION TAG SEQADV 4EKI HIS A -5 UNP Q8TEK3 EXPRESSION TAG SEQADV 4EKI HIS A -4 UNP Q8TEK3 EXPRESSION TAG SEQADV 4EKI HIS A -3 UNP Q8TEK3 EXPRESSION TAG SEQADV 4EKI SER A -2 UNP Q8TEK3 EXPRESSION TAG SEQADV 4EKI SER A -1 UNP Q8TEK3 EXPRESSION TAG SEQADV 4EKI GLY A 0 UNP Q8TEK3 EXPRESSION TAG SEQRES 1 A 425 HIS HIS HIS HIS HIS HIS SER SER GLY MET GLY GLU LYS SEQRES 2 A 425 LEU GLU LEU ARG LEU LYS SER PRO VAL GLY ALA GLU PRO SEQRES 3 A 425 ALA VAL TYR PRO TRP PRO LEU PRO VAL TYR ASP LYS HIS SEQRES 4 A 425 HIS ASP ALA ALA HIS GLU ILE ILE GLU THR ILE ARG TRP SEQRES 5 A 425 VAL CYS GLU GLU ILE PRO ASP LEU LYS LEU ALA MET GLU SEQRES 6 A 425 ASN TYR VAL LEU ILE ASP TYR ASP THR LYS SER PHE GLU SEQRES 7 A 425 SER MET GLN ARG LEU CYS ASP LYS TYR ASN ARG ALA ILE SEQRES 8 A 425 ASP SER ILE HIS GLN LEU TRP LYS GLY THR THR GLN PRO SEQRES 9 A 425 MET LYS LEU ASN THR ARG PRO SER THR GLY LEU LEU ARG SEQRES 10 A 425 HIS ILE LEU GLN GLN VAL TYR ASN HIS SER VAL THR ASP SEQRES 11 A 425 PRO GLU LYS LEU ASN ASN TYR GLU PRO PHE SER PRO GLU SEQRES 12 A 425 VAL TYR GLY GLU THR SER PHE ASP LEU VAL ALA GLN MET SEQRES 13 A 425 ILE ASP GLU ILE LYS MET THR ASP ASP ASP LEU PHE VAL SEQRES 14 A 425 ASP LEU GLY SER GLY VAL GLY GLN VAL VAL LEU GLN VAL SEQRES 15 A 425 ALA ALA ALA THR ASN CYS LYS HIS HIS TYR GLY VAL GLU SEQRES 16 A 425 LYS ALA ASP ILE PRO ALA LYS TYR ALA GLU THR MET ASP SEQRES 17 A 425 ARG GLU PHE ARG LYS TRP MET LYS TRP TYR GLY LYS LYS SEQRES 18 A 425 HIS ALA GLU TYR THR LEU GLU ARG GLY ASP PHE LEU SER SEQRES 19 A 425 GLU GLU TRP ARG GLU ARG ILE ALA ASN THR SER VAL ILE SEQRES 20 A 425 PHE VAL ASN ASN PHE ALA PHE GLY PRO GLU VAL ASP HIS SEQRES 21 A 425 GLN LEU LYS GLU ARG PHE ALA ASN MET LYS GLU GLY GLY SEQRES 22 A 425 ARG ILE VAL SER SER LYS PRO PHE ALA PRO LEU ASN PHE SEQRES 23 A 425 ARG ILE ASN SER ARG ASN LEU SER ASP ILE GLY THR ILE SEQRES 24 A 425 MET ARG VAL VAL GLU LEU SER PRO LEU LYS GLY SER VAL SEQRES 25 A 425 SER TRP THR GLY LYS PRO VAL SER TYR TYR LEU HIS THR SEQRES 26 A 425 ILE ASP ARG THR ILE LEU GLU ASN TYR PHE SER SER LEU SEQRES 27 A 425 LYS ASN PRO LYS LEU ARG GLU GLU GLN GLU ALA ALA ARG SEQRES 28 A 425 ARG ARG GLN GLN ARG GLU SER LYS SER ASN ALA ALA THR SEQRES 29 A 425 PRO THR LYS GLY PRO GLU GLY LYS VAL ALA GLY PRO ALA SEQRES 30 A 425 ASP ALA PRO MET ASP SER GLY ALA GLU GLU GLU LYS ALA SEQRES 31 A 425 GLY ALA ALA THR VAL LYS LYS PRO SER PRO SER LYS ALA SEQRES 32 A 425 ARG LYS LYS LYS LEU ASN LYS LYS GLY ARG LYS MET ALA SEQRES 33 A 425 GLY ARG LYS ARG GLY ARG PRO LYS LYS HET 0QK A 501 39 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HETNAM 0QK 7-{5-[(3-{[(4-TERT-BUTYLPHENYL)CARBAMOYL]AMINO}PROPYL) HETNAM 2 0QK (PROPAN-2-YL)AMINO]-5-DEOXY-BETA-D-RIBOFURANOSYL}-7H- HETNAM 3 0QK PYRROLO[2,3-D]PYRIMIDIN-4-AMINE HETNAM SO4 SULFATE ION FORMUL 2 0QK C28 H41 N7 O4 FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *10(H2 O) HELIX 1 1 ALA A 33 ILE A 48 1 16 HELIX 2 2 ILE A 48 MET A 55 1 8 HELIX 3 3 SER A 67 TRP A 89 1 23 HELIX 4 4 SER A 103 VAL A 119 1 17 HELIX 5 5 SER A 140 ILE A 151 1 12 HELIX 6 6 GLY A 167 THR A 177 1 11 HELIX 7 7 ALA A 188 TYR A 209 1 22 HELIX 8 8 SER A 225 THR A 235 1 11 HELIX 9 9 PHE A 245 ALA A 258 1 14 HELIX 10 10 ASP A 286 THR A 289 5 4 HELIX 11 11 SER A 304 LYS A 308 5 5 HELIX 12 12 ARG A 319 SER A 328 1 10 SHEET 1 A 2 GLU A 6 LEU A 9 0 SHEET 2 A 2 ALA A 18 PRO A 21 -1 O ALA A 18 N LEU A 9 SHEET 1 B 2 VAL A 26 ASP A 28 0 SHEET 2 B 2 HIS A 31 ASP A 32 -1 O HIS A 31 N TYR A 27 SHEET 1 C 7 TYR A 216 ARG A 220 0 SHEET 2 C 7 HIS A 181 GLU A 186 1 N GLY A 184 O THR A 217 SHEET 3 C 7 LEU A 158 LEU A 162 1 N ASP A 161 O TYR A 183 SHEET 4 C 7 VAL A 237 VAL A 240 1 O PHE A 239 N VAL A 160 SHEET 5 C 7 ARG A 265 SER A 268 1 O VAL A 267 N ILE A 238 SHEET 6 C 7 TYR A 312 ILE A 317 -1 O HIS A 315 N ILE A 266 SHEET 7 C 7 MET A 291 LEU A 296 -1 N LEU A 296 O TYR A 312 CISPEP 1 TRP A 22 PRO A 23 0 -5.95 SITE 1 AC1 12 TYR A 136 ASP A 161 GLY A 163 SER A 164 SITE 2 AC1 12 VAL A 169 GLU A 186 LYS A 187 ALA A 188 SITE 3 AC1 12 GLY A 221 ASP A 222 PHE A 223 ASN A 241 SITE 1 AC2 3 ARG A 203 LYS A 207 HIS A 213 SITE 1 AC3 2 THR A 100 ARG A 101 SITE 1 AC4 2 SER A 103 THR A 104 CRYST1 155.053 155.053 48.452 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006449 0.003724 0.000000 0.00000 SCALE2 0.000000 0.007447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020639 0.00000