PDB Short entry for 4ER7 HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-APR-12 4ER7 TITLE CRYSTAL STRUCTURE OF HUMAN DOT1L IN COMPLEX WITH INHIBITOR SGC0947 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DOT1-LIKE PROTEIN, HISTONE H3-K79 METHYLTRANSFERASE, H3-K79- COMPND 5 HMTASE, LYSINE N-METHYLTRANSFERASE 4; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DOT1L, KIAA1814, KMT4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 V2R PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS HISTONE, METHYLTRANSFERASE, EPIGENETICS, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,W.TEMPEL,W.YU,A.SCOPTON,Y.LI,K.T.NGUYEN,M.VEDADI, AUTHOR 2 J.E.BRADNER,M.SCHAPIRA,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA, AUTHOR 3 P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 28-FEB-24 4ER7 1 REMARK SEQADV REVDAT 3 16-MAY-18 4ER7 1 JRNL REVDAT 2 15-NOV-17 4ER7 1 REMARK REVDAT 1 16-MAY-12 4ER7 0 JRNL AUTH W.YU,E.J.CHORY,A.K.WERNIMONT,W.TEMPEL,A.SCOPTON, JRNL AUTH 2 A.FEDERATION,J.J.MARINEAU,J.QI,D.BARSYTE-LOVEJOY,J.YI, JRNL AUTH 3 R.MARCELLUS,R.E.IACOB,J.R.ENGEN,C.GRIFFIN,A.AMAN, JRNL AUTH 4 E.WIENHOLDS,F.LI,J.PINEDA,G.ESTIU,T.SHATSEVA,T.HAJIAN, JRNL AUTH 5 R.AL-AWAR,J.E.DICK,M.VEDADI,P.J.BROWN,C.H.ARROWSMITH, JRNL AUTH 6 J.E.BRADNER,M.SCHAPIRA JRNL TITL CATALYTIC SITE REMODELLING OF THE DOT1L METHYLTRANSFERASE BY JRNL TITL 2 SELECTIVE INHIBITORS. JRNL REF NAT COMMUN V. 3 1288 2012 JRNL REFN ESSN 2041-1723 JRNL PMID 23250418 JRNL DOI 10.1038/NCOMMS2304 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1722 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : 0.96000 REMARK 3 B12 (A**2) : -0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.670 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2775 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1838 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3790 ; 1.380 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4482 ; 0.971 ; 3.011 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 341 ; 5.455 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;32.692 ;23.884 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;14.180 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.020 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 414 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3103 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 570 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1682 ; 0.926 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 668 ; 0.150 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2723 ; 1.756 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1093 ; 2.097 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1067 ; 3.447 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ER7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979310 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34959 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 43.233 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.83500 REMARK 200 R SYM FOR SHELL (I) : 0.83500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: RIGID BODY REFINEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M NAFORMATE, 0.1 M NAACET, PH 4.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.20000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.60000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.40000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.80000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL MOLECULE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 56 REMARK 465 ASN A 57 REMARK 465 TYR A 58 REMARK 465 VAL A 59 REMARK 465 LEU A 60 REMARK 465 PRO A 130 REMARK 465 PHE A 131 REMARK 465 SER A 132 REMARK 465 PRO A 133 REMARK 465 GLU A 134 REMARK 465 VAL A 135 REMARK 465 TYR A 136 REMARK 465 GLY A 137 REMARK 465 ARG A 343 REMARK 465 ARG A 344 REMARK 465 GLN A 345 REMARK 465 GLN A 346 REMARK 465 ARG A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 LYS A 350 REMARK 465 SER A 351 REMARK 465 ASN A 352 REMARK 465 ALA A 353 REMARK 465 ALA A 354 REMARK 465 THR A 355 REMARK 465 PRO A 356 REMARK 465 THR A 357 REMARK 465 LYS A 358 REMARK 465 GLY A 359 REMARK 465 PRO A 360 REMARK 465 GLU A 361 REMARK 465 GLY A 362 REMARK 465 LYS A 363 REMARK 465 VAL A 364 REMARK 465 ALA A 365 REMARK 465 GLY A 366 REMARK 465 PRO A 367 REMARK 465 ALA A 368 REMARK 465 ASP A 369 REMARK 465 ALA A 370 REMARK 465 PRO A 371 REMARK 465 MET A 372 REMARK 465 ASP A 373 REMARK 465 SER A 374 REMARK 465 GLY A 375 REMARK 465 ALA A 376 REMARK 465 GLU A 377 REMARK 465 GLU A 378 REMARK 465 GLU A 379 REMARK 465 LYS A 380 REMARK 465 ALA A 381 REMARK 465 GLY A 382 REMARK 465 ALA A 383 REMARK 465 ALA A 384 REMARK 465 THR A 385 REMARK 465 VAL A 386 REMARK 465 LYS A 387 REMARK 465 LYS A 388 REMARK 465 PRO A 389 REMARK 465 SER A 390 REMARK 465 PRO A 391 REMARK 465 SER A 392 REMARK 465 LYS A 393 REMARK 465 ALA A 394 REMARK 465 ARG A 395 REMARK 465 LYS A 396 REMARK 465 LYS A 397 REMARK 465 LYS A 398 REMARK 465 LEU A 399 REMARK 465 ASN A 400 REMARK 465 LYS A 401 REMARK 465 LYS A 402 REMARK 465 GLY A 403 REMARK 465 ARG A 404 REMARK 465 LYS A 405 REMARK 465 MET A 406 REMARK 465 ALA A 407 REMARK 465 GLY A 408 REMARK 465 ARG A 409 REMARK 465 LYS A 410 REMARK 465 ARG A 411 REMARK 465 GLY A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 LYS A 415 REMARK 465 LYS A 416 REMARK 465 MET A 417 REMARK 465 ASN A 418 REMARK 465 THR A 419 REMARK 465 ALA A 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 29 CD CE NZ REMARK 470 ILE A 61 CG1 CG2 CD1 REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 LYS A 97 CD CE NZ REMARK 470 ASN A 99 CG OD1 ND2 REMARK 470 LYS A 124 CD CE NZ REMARK 470 ASN A 127 CG OD1 ND2 REMARK 470 TYR A 128 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 THR A 139 OG1 CG2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 ASP A 156 CG OD1 OD2 REMARK 470 GLN A 168 OE1 NE2 REMARK 470 LYS A 180 CD CE NZ REMARK 470 LYS A 187 CE NZ REMARK 470 LYS A 193 CD CE NZ REMARK 470 LYS A 207 CD CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 470 ARG A 220 CD NE CZ NH1 NH2 REMARK 470 GLU A 230 CD OE1 OE2 REMARK 470 GLU A 248 CD OE1 OE2 REMARK 470 GLU A 255 CD OE1 OE2 REMARK 470 LYS A 261 CE NZ REMARK 470 ARG A 278 CD NE CZ NH1 NH2 REMARK 470 ARG A 282 CD NE CZ NH1 NH2 REMARK 470 LYS A 300 CD CE NZ REMARK 470 LYS A 308 CE NZ REMARK 470 GLU A 337 CD OE1 OE2 REMARK 470 ARG A 342 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -169.44 -160.35 REMARK 500 ASP A 62 32.25 -89.85 REMARK 500 ASN A 99 11.56 57.59 REMARK 500 ASN A 127 5.58 -68.72 REMARK 500 ASN A 276 69.59 -111.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AW3 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EQZ RELATED DB: PDB REMARK 900 RELATED ID: 4ER0 RELATED DB: PDB REMARK 900 RELATED ID: 4ER3 RELATED DB: PDB REMARK 900 RELATED ID: 4ER5 RELATED DB: PDB REMARK 900 RELATED ID: 4ER6 RELATED DB: PDB DBREF 4ER7 A 1 420 UNP Q8TEK3 DOT1L_HUMAN 1 420 SEQADV 4ER7 GLY A 0 UNP Q8TEK3 EXPRESSION TAG SEQRES 1 A 421 GLY MET GLY GLU LYS LEU GLU LEU ARG LEU LYS SER PRO SEQRES 2 A 421 VAL GLY ALA GLU PRO ALA VAL TYR PRO TRP PRO LEU PRO SEQRES 3 A 421 VAL TYR ASP LYS HIS HIS ASP ALA ALA HIS GLU ILE ILE SEQRES 4 A 421 GLU THR ILE ARG TRP VAL CYS GLU GLU ILE PRO ASP LEU SEQRES 5 A 421 LYS LEU ALA MET GLU ASN TYR VAL LEU ILE ASP TYR ASP SEQRES 6 A 421 THR LYS SER PHE GLU SER MET GLN ARG LEU CYS ASP LYS SEQRES 7 A 421 TYR ASN ARG ALA ILE ASP SER ILE HIS GLN LEU TRP LYS SEQRES 8 A 421 GLY THR THR GLN PRO MET LYS LEU ASN THR ARG PRO SER SEQRES 9 A 421 THR GLY LEU LEU ARG HIS ILE LEU GLN GLN VAL TYR ASN SEQRES 10 A 421 HIS SER VAL THR ASP PRO GLU LYS LEU ASN ASN TYR GLU SEQRES 11 A 421 PRO PHE SER PRO GLU VAL TYR GLY GLU THR SER PHE ASP SEQRES 12 A 421 LEU VAL ALA GLN MET ILE ASP GLU ILE LYS MET THR ASP SEQRES 13 A 421 ASP ASP LEU PHE VAL ASP LEU GLY SER GLY VAL GLY GLN SEQRES 14 A 421 VAL VAL LEU GLN VAL ALA ALA ALA THR ASN CYS LYS HIS SEQRES 15 A 421 HIS TYR GLY VAL GLU LYS ALA ASP ILE PRO ALA LYS TYR SEQRES 16 A 421 ALA GLU THR MET ASP ARG GLU PHE ARG LYS TRP MET LYS SEQRES 17 A 421 TRP TYR GLY LYS LYS HIS ALA GLU TYR THR LEU GLU ARG SEQRES 18 A 421 GLY ASP PHE LEU SER GLU GLU TRP ARG GLU ARG ILE ALA SEQRES 19 A 421 ASN THR SER VAL ILE PHE VAL ASN ASN PHE ALA PHE GLY SEQRES 20 A 421 PRO GLU VAL ASP HIS GLN LEU LYS GLU ARG PHE ALA ASN SEQRES 21 A 421 MET LYS GLU GLY GLY ARG ILE VAL SER SER LYS PRO PHE SEQRES 22 A 421 ALA PRO LEU ASN PHE ARG ILE ASN SER ARG ASN LEU SER SEQRES 23 A 421 ASP ILE GLY THR ILE MET ARG VAL VAL GLU LEU SER PRO SEQRES 24 A 421 LEU LYS GLY SER VAL SER TRP THR GLY LYS PRO VAL SER SEQRES 25 A 421 TYR TYR LEU HIS THR ILE ASP ARG THR ILE LEU GLU ASN SEQRES 26 A 421 TYR PHE SER SER LEU LYS ASN PRO LYS LEU ARG GLU GLU SEQRES 27 A 421 GLN GLU ALA ALA ARG ARG ARG GLN GLN ARG GLU SER LYS SEQRES 28 A 421 SER ASN ALA ALA THR PRO THR LYS GLY PRO GLU GLY LYS SEQRES 29 A 421 VAL ALA GLY PRO ALA ASP ALA PRO MET ASP SER GLY ALA SEQRES 30 A 421 GLU GLU GLU LYS ALA GLY ALA ALA THR VAL LYS LYS PRO SEQRES 31 A 421 SER PRO SER LYS ALA ARG LYS LYS LYS LEU ASN LYS LYS SEQRES 32 A 421 GLY ARG LYS MET ALA GLY ARG LYS ARG GLY ARG PRO LYS SEQRES 33 A 421 LYS MET ASN THR ALA HET AW3 A 501 74 HET GOL A 502 6 HETNAM AW3 5-BROMO-7-{5-[(3-{[(4-TERT-BUTYLPHENYL) HETNAM 2 AW3 CARBAMOYL]AMINO}PROPYL)AMINO]-5-DEOXY-BETA-D- HETNAM 3 AW3 RIBOFURANOSYL}-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 AW3 C25 H34 BR N7 O4 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *57(H2 O) HELIX 1 1 ALA A 33 ILE A 48 1 16 HELIX 2 2 ILE A 48 MET A 55 1 8 HELIX 3 3 SER A 67 GLY A 91 1 25 HELIX 4 4 SER A 103 VAL A 119 1 17 HELIX 5 5 ASP A 121 ASN A 127 1 7 HELIX 6 6 THR A 139 ILE A 151 1 13 HELIX 7 7 GLY A 167 THR A 177 1 11 HELIX 8 8 ALA A 188 GLY A 210 1 23 HELIX 9 9 SER A 225 THR A 235 1 11 HELIX 10 10 GLY A 246 ALA A 258 1 13 HELIX 11 11 ASP A 286 THR A 289 5 4 HELIX 12 12 ARG A 319 ASN A 331 1 13 HELIX 13 13 ASN A 331 ARG A 342 1 12 SHEET 1 A 2 GLU A 6 LEU A 9 0 SHEET 2 A 2 ALA A 18 PRO A 21 -1 O TYR A 20 N LEU A 7 SHEET 1 B 2 VAL A 26 ASP A 28 0 SHEET 2 B 2 HIS A 31 ASP A 32 -1 O HIS A 31 N ASP A 28 SHEET 1 C 7 TYR A 216 ARG A 220 0 SHEET 2 C 7 HIS A 181 GLU A 186 1 N GLY A 184 O GLU A 219 SHEET 3 C 7 LEU A 158 LEU A 162 1 N PHE A 159 O HIS A 181 SHEET 4 C 7 VAL A 237 VAL A 240 1 O PHE A 239 N VAL A 160 SHEET 5 C 7 ARG A 265 SER A 268 1 O VAL A 267 N ILE A 238 SHEET 6 C 7 TYR A 313 ILE A 317 -1 O HIS A 315 N ILE A 266 SHEET 7 C 7 MET A 291 GLU A 295 -1 N VAL A 294 O LEU A 314 CISPEP 1 TRP A 22 PRO A 23 0 -4.46 SITE 1 AC1 13 ASP A 161 GLY A 163 SER A 164 VAL A 169 SITE 2 AC1 13 GLU A 186 LYS A 187 GLY A 221 ASP A 222 SITE 3 AC1 13 PHE A 223 PHE A 239 ASN A 241 SER A 268 SITE 4 AC1 13 HOH A 651 SITE 1 AC2 6 ALA A 18 VAL A 19 TYR A 20 HIS A 117 SITE 2 AC2 6 LYS A 204 HOH A 650 CRYST1 150.617 150.617 52.800 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006639 0.003833 0.000000 0.00000 SCALE2 0.000000 0.007666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018939 0.00000