PDB Short entry for 4F4I HEADER TRANSFERASE 10-MAY-12 4F4I TITLE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM STAPHYLOCOCCUS AUREUS IN TITLE 2 APO-FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50; SOURCE 5 GENE: TMK, SAV0482; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG), KEYWDS 3 STRUCTURES OF MTB PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB KEYWDS 4 INHIBITORS (MTBI), THYMIDYLATE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,R.JEDRZEJCZAK, AUTHOR 2 G.BABNIGG,E.RUBIN,J.SACCHETTINI,A.JOACHIMIAK,W.F.ANDERSON,MIDWEST AUTHOR 3 CENTER FOR STRUCTURAL GENOMICS (MCSG),STRUCTURES OF MTB PROTEINS AUTHOR 4 CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS (MTBI) REVDAT 5 13-SEP-23 4F4I 1 SEQADV REVDAT 4 29-NOV-17 4F4I 1 REMARK REVDAT 3 15-NOV-17 4F4I 1 REMARK REVDAT 2 10-OCT-12 4F4I 1 AUTHOR REVDAT 1 23-MAY-12 4F4I 0 JRNL AUTH E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA, JRNL AUTH 2 R.JEDRZEJCZAK,G.BABNIGG,E.RUBIN,J.SACCHETTINI,A.JOACHIMIAK, JRNL AUTH 3 W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM STAPHYLOCOCCUS JRNL TITL 2 AUREUS IN APO-FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 12326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 605 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 7.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 4 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3122 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.82000 REMARK 3 B22 (A**2) : -19.23000 REMARK 3 B33 (A**2) : 16.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 35.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.864 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.799 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3185 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4297 ; 1.493 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 6.517 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;40.129 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;19.240 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;25.791 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 484 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2396 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1940 ; 0.461 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3144 ; 0.845 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1245 ; 1.198 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1153 ; 2.095 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.776 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : L, -K, H REMARK 3 TWIN FRACTION : 0.224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5924 -1.5511 15.5177 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1707 REMARK 3 T33: 0.0412 T12: 0.0332 REMARK 3 T13: -0.0576 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 3.8014 L22: 5.9129 REMARK 3 L33: 2.4600 L12: 2.5423 REMARK 3 L13: -0.6312 L23: 0.6865 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: 0.1142 S13: 0.2072 REMARK 3 S21: -0.1893 S22: 0.0136 S23: 0.0820 REMARK 3 S31: -0.1232 S32: 0.0103 S33: 0.0266 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7830 6.1055 23.6885 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.1720 REMARK 3 T33: 0.1345 T12: -0.0118 REMARK 3 T13: -0.0526 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.4133 L22: 0.3609 REMARK 3 L33: 0.4607 L12: -0.3018 REMARK 3 L13: -0.3988 L23: 0.2132 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.0008 S13: 0.0094 REMARK 3 S21: 0.0183 S22: -0.0019 S23: 0.0674 REMARK 3 S31: -0.0234 S32: 0.0099 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6687 15.2435 22.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.2282 REMARK 3 T33: 0.1808 T12: 0.0311 REMARK 3 T13: 0.0144 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.2972 L22: 3.1742 REMARK 3 L33: 2.3762 L12: 1.2995 REMARK 3 L13: 0.8381 L23: 1.3824 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: -0.1131 S13: 0.1304 REMARK 3 S21: 0.0717 S22: 0.0622 S23: -0.1066 REMARK 3 S31: -0.1483 S32: 0.1625 S33: 0.0115 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 176 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9136 -5.3367 18.2844 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.1722 REMARK 3 T33: 0.1315 T12: 0.0130 REMARK 3 T13: -0.0554 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.9219 L22: 5.0354 REMARK 3 L33: 3.9877 L12: 1.0097 REMARK 3 L13: -1.5044 L23: -1.3323 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: -0.0870 S13: -0.1282 REMARK 3 S21: -0.1650 S22: -0.0065 S23: -0.1370 REMARK 3 S31: 0.4207 S32: 0.1393 S33: 0.0989 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8162 23.7689 0.8215 REMARK 3 T TENSOR REMARK 3 T11: 0.2141 T22: 0.1987 REMARK 3 T33: 0.0752 T12: 0.0005 REMARK 3 T13: -0.0055 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.0314 L22: 1.6545 REMARK 3 L33: 1.5599 L12: 0.4374 REMARK 3 L13: -0.6736 L23: 0.1542 REMARK 3 S TENSOR REMARK 3 S11: -0.2681 S12: -0.0443 S13: -0.0839 REMARK 3 S21: -0.3884 S22: 0.1061 S23: -0.0585 REMARK 3 S31: 0.0148 S32: -0.1355 S33: 0.1620 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3891 24.4219 -9.6925 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: 0.1903 REMARK 3 T33: 0.1767 T12: -0.0006 REMARK 3 T13: -0.0193 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4288 L22: 0.0726 REMARK 3 L33: 0.6419 L12: -0.1224 REMARK 3 L13: -0.0529 L23: 0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.0205 S13: -0.0233 REMARK 3 S21: 0.0003 S22: -0.0503 S23: 0.0779 REMARK 3 S31: -0.0300 S32: -0.0209 S33: 0.0627 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 90 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4027 14.9753 0.3048 REMARK 3 T TENSOR REMARK 3 T11: 0.2282 T22: 0.2106 REMARK 3 T33: 0.1203 T12: 0.0057 REMARK 3 T13: -0.0091 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.6488 L22: 0.4419 REMARK 3 L33: 0.5897 L12: -0.0313 REMARK 3 L13: -0.6037 L23: -0.0680 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: -0.0416 S13: -0.0196 REMARK 3 S21: -0.0031 S22: -0.0190 S23: 0.0345 REMARK 3 S31: 0.0396 S32: 0.0310 S33: 0.0205 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 153 B 204 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7759 19.0919 8.0264 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.2311 REMARK 3 T33: 0.0920 T12: -0.0031 REMARK 3 T13: -0.0415 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.7402 L22: 1.9767 REMARK 3 L33: 0.7183 L12: -0.2027 REMARK 3 L13: -0.7264 L23: 0.1708 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: -0.1571 S13: -0.0562 REMARK 3 S21: 0.1271 S22: -0.0429 S23: -0.0138 REMARK 3 S31: 0.0540 S32: 0.1295 S33: 0.0727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4F4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12948 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4DWJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M HEPES, REMARK 280 25 % PEG 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.51100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -11.86847 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 45.99130 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 LYS A 144 REMARK 465 ASN A 145 REMARK 465 SER A 146 REMARK 465 ARG A 147 REMARK 465 ASP A 148 REMARK 465 GLN A 149 REMARK 465 ASN A 150 REMARK 465 ARG A 151 REMARK 465 LEU A 152 REMARK 465 ASN A 173 REMARK 465 GLU A 174 REMARK 465 ILE A 205 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ARG B 147 REMARK 465 ASP B 148 REMARK 465 GLN B 149 REMARK 465 ASN B 150 REMARK 465 ARG B 151 REMARK 465 LEU B 152 REMARK 465 ILE B 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 77 -53.89 -132.96 REMARK 500 ARG A 92 146.61 84.55 REMARK 500 TYR A 93 -147.79 -160.15 REMARK 500 GLU B 37 125.12 -39.74 REMARK 500 LYS B 77 -43.30 -136.39 REMARK 500 TYR B 93 -159.25 -165.35 REMARK 500 LEU B 123 79.88 -105.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC105704 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4DWJ RELATED DB: PDB REMARK 900 RELATED ID: 4EAQ RELATED DB: PDB DBREF 4F4I A 1 205 UNP P65248 KTHY_STAAM 1 205 DBREF 4F4I B 1 205 UNP P65248 KTHY_STAAM 1 205 SEQADV 4F4I MET A -23 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS A -22 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS A -21 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS A -20 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS A -19 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS A -18 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS A -17 UNP P65248 EXPRESSION TAG SEQADV 4F4I SER A -16 UNP P65248 EXPRESSION TAG SEQADV 4F4I SER A -15 UNP P65248 EXPRESSION TAG SEQADV 4F4I GLY A -14 UNP P65248 EXPRESSION TAG SEQADV 4F4I VAL A -13 UNP P65248 EXPRESSION TAG SEQADV 4F4I ASP A -12 UNP P65248 EXPRESSION TAG SEQADV 4F4I LEU A -11 UNP P65248 EXPRESSION TAG SEQADV 4F4I GLY A -10 UNP P65248 EXPRESSION TAG SEQADV 4F4I THR A -9 UNP P65248 EXPRESSION TAG SEQADV 4F4I GLU A -8 UNP P65248 EXPRESSION TAG SEQADV 4F4I ASN A -7 UNP P65248 EXPRESSION TAG SEQADV 4F4I LEU A -6 UNP P65248 EXPRESSION TAG SEQADV 4F4I TYR A -5 UNP P65248 EXPRESSION TAG SEQADV 4F4I PHE A -4 UNP P65248 EXPRESSION TAG SEQADV 4F4I GLN A -3 UNP P65248 EXPRESSION TAG SEQADV 4F4I SER A -2 UNP P65248 EXPRESSION TAG SEQADV 4F4I ASN A -1 UNP P65248 EXPRESSION TAG SEQADV 4F4I ALA A 0 UNP P65248 EXPRESSION TAG SEQADV 4F4I MET B -23 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS B -22 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS B -21 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS B -20 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS B -19 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS B -18 UNP P65248 EXPRESSION TAG SEQADV 4F4I HIS B -17 UNP P65248 EXPRESSION TAG SEQADV 4F4I SER B -16 UNP P65248 EXPRESSION TAG SEQADV 4F4I SER B -15 UNP P65248 EXPRESSION TAG SEQADV 4F4I GLY B -14 UNP P65248 EXPRESSION TAG SEQADV 4F4I VAL B -13 UNP P65248 EXPRESSION TAG SEQADV 4F4I ASP B -12 UNP P65248 EXPRESSION TAG SEQADV 4F4I LEU B -11 UNP P65248 EXPRESSION TAG SEQADV 4F4I GLY B -10 UNP P65248 EXPRESSION TAG SEQADV 4F4I THR B -9 UNP P65248 EXPRESSION TAG SEQADV 4F4I GLU B -8 UNP P65248 EXPRESSION TAG SEQADV 4F4I ASN B -7 UNP P65248 EXPRESSION TAG SEQADV 4F4I LEU B -6 UNP P65248 EXPRESSION TAG SEQADV 4F4I TYR B -5 UNP P65248 EXPRESSION TAG SEQADV 4F4I PHE B -4 UNP P65248 EXPRESSION TAG SEQADV 4F4I GLN B -3 UNP P65248 EXPRESSION TAG SEQADV 4F4I SER B -2 UNP P65248 EXPRESSION TAG SEQADV 4F4I ASN B -1 UNP P65248 EXPRESSION TAG SEQADV 4F4I ALA B 0 UNP P65248 EXPRESSION TAG SEQRES 1 A 229 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 229 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET SER SEQRES 3 A 229 ALA PHE ILE THR PHE GLU GLY PRO GLU GLY SER GLY LYS SEQRES 4 A 229 THR THR VAL ILE ASN GLU VAL TYR HIS ARG LEU VAL LYS SEQRES 5 A 229 ASP TYR ASP VAL ILE MET THR ARG GLU PRO GLY GLY VAL SEQRES 6 A 229 PRO THR GLY GLU GLU ILE ARG LYS ILE VAL LEU GLU GLY SEQRES 7 A 229 ASN ASP MET ASP ILE ARG THR GLU ALA MET LEU PHE ALA SEQRES 8 A 229 ALA SER ARG ARG GLU HIS LEU VAL LEU LYS VAL ILE PRO SEQRES 9 A 229 ALA LEU LYS GLU GLY LYS VAL VAL LEU CYS ASP ARG TYR SEQRES 10 A 229 ILE ASP SER SER LEU ALA TYR GLN GLY TYR ALA ARG GLY SEQRES 11 A 229 ILE GLY VAL GLU GLU VAL ARG ALA LEU ASN GLU PHE ALA SEQRES 12 A 229 ILE ASN GLY LEU TYR PRO ASP LEU THR ILE TYR LEU ASN SEQRES 13 A 229 VAL SER ALA GLU VAL GLY ARG GLU ARG ILE ILE LYS ASN SEQRES 14 A 229 SER ARG ASP GLN ASN ARG LEU ASP GLN GLU ASP LEU LYS SEQRES 15 A 229 PHE HIS GLU LYS VAL ILE GLU GLY TYR GLN GLU ILE ILE SEQRES 16 A 229 HIS ASN GLU SER GLN ARG PHE LYS SER VAL ASN ALA ASP SEQRES 17 A 229 GLN PRO LEU GLU ASN VAL VAL GLU ASP THR TYR GLN THR SEQRES 18 A 229 ILE ILE LYS TYR LEU GLU LYS ILE SEQRES 1 B 229 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 229 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET SER SEQRES 3 B 229 ALA PHE ILE THR PHE GLU GLY PRO GLU GLY SER GLY LYS SEQRES 4 B 229 THR THR VAL ILE ASN GLU VAL TYR HIS ARG LEU VAL LYS SEQRES 5 B 229 ASP TYR ASP VAL ILE MET THR ARG GLU PRO GLY GLY VAL SEQRES 6 B 229 PRO THR GLY GLU GLU ILE ARG LYS ILE VAL LEU GLU GLY SEQRES 7 B 229 ASN ASP MET ASP ILE ARG THR GLU ALA MET LEU PHE ALA SEQRES 8 B 229 ALA SER ARG ARG GLU HIS LEU VAL LEU LYS VAL ILE PRO SEQRES 9 B 229 ALA LEU LYS GLU GLY LYS VAL VAL LEU CYS ASP ARG TYR SEQRES 10 B 229 ILE ASP SER SER LEU ALA TYR GLN GLY TYR ALA ARG GLY SEQRES 11 B 229 ILE GLY VAL GLU GLU VAL ARG ALA LEU ASN GLU PHE ALA SEQRES 12 B 229 ILE ASN GLY LEU TYR PRO ASP LEU THR ILE TYR LEU ASN SEQRES 13 B 229 VAL SER ALA GLU VAL GLY ARG GLU ARG ILE ILE LYS ASN SEQRES 14 B 229 SER ARG ASP GLN ASN ARG LEU ASP GLN GLU ASP LEU LYS SEQRES 15 B 229 PHE HIS GLU LYS VAL ILE GLU GLY TYR GLN GLU ILE ILE SEQRES 16 B 229 HIS ASN GLU SER GLN ARG PHE LYS SER VAL ASN ALA ASP SEQRES 17 B 229 GLN PRO LEU GLU ASN VAL VAL GLU ASP THR TYR GLN THR SEQRES 18 B 229 ILE ILE LYS TYR LEU GLU LYS ILE FORMUL 3 HOH *40(H2 O) HELIX 1 1 GLY A 14 VAL A 27 1 14 HELIX 2 2 VAL A 41 GLU A 53 1 13 HELIX 3 3 ASP A 58 LYS A 77 1 20 HELIX 4 4 LYS A 77 GLY A 85 1 9 HELIX 5 5 TYR A 93 GLY A 102 1 10 HELIX 6 6 GLY A 108 ASN A 121 1 14 HELIX 7 7 SER A 134 ILE A 143 1 10 HELIX 8 8 GLN A 154 HIS A 172 1 19 HELIX 9 9 PRO A 186 GLU A 203 1 18 HELIX 10 10 GLY B 14 LYS B 28 1 15 HELIX 11 11 VAL B 41 GLU B 53 1 13 HELIX 12 12 ASP B 58 LYS B 77 1 20 HELIX 13 13 LYS B 77 GLU B 84 1 8 HELIX 14 14 TYR B 93 GLN B 101 1 9 HELIX 15 15 GLY B 108 ASN B 121 1 14 HELIX 16 16 SER B 134 ASN B 145 1 12 HELIX 17 17 GLN B 154 ILE B 171 1 18 HELIX 18 18 PRO B 186 LYS B 204 1 19 SHEET 1 A 5 VAL A 32 THR A 35 0 SHEET 2 A 5 VAL A 87 ASP A 91 1 O LEU A 89 N ILE A 33 SHEET 3 A 5 ALA A 3 GLU A 8 1 N ILE A 5 O CYS A 90 SHEET 4 A 5 LEU A 127 ASN A 132 1 O ILE A 129 N GLU A 8 SHEET 5 A 5 PHE A 178 ASN A 182 1 O VAL A 181 N ASN A 132 SHEET 1 B 5 VAL B 32 THR B 35 0 SHEET 2 B 5 VAL B 87 CYS B 90 1 O LEU B 89 N THR B 35 SHEET 3 B 5 ALA B 3 GLU B 8 1 N ALA B 3 O VAL B 88 SHEET 4 B 5 LEU B 127 ASN B 132 1 O ILE B 129 N THR B 6 SHEET 5 B 5 PHE B 178 ASN B 182 1 O VAL B 181 N TYR B 130 CISPEP 1 GLU A 37 PRO A 38 0 -0.17 CISPEP 2 GLU B 37 PRO B 38 0 4.98 CRYST1 46.099 91.022 47.498 90.00 104.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021692 0.000000 0.005600 0.00000 SCALE2 0.000000 0.010986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021744 0.00000