PDB Short entry for 4F4S HEADER MEMBRANE PROTEIN/ANTIBIOTIC 11-MAY-12 4F4S TITLE STRUCTURE OF THE YEAST F1FO ATPASE C10 RING WITH BOUND OLIGOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D, E, K, L, M, N, O; COMPND 4 SYNONYM: LIPID-BINDING PROTEIN, OLIGOMYCIN RESISTANCE PROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: OLI1, ATP9, OLI3, PHO2, Q0130; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS C10 RING, F1FO ATP SYNTHASE, OLIGOMYCIN, MITOCHONDRIA, MEMBRANE KEYWDS 2 PROTEIN-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.SYMERSKY,D.M.MUELLER REVDAT 5 13-MAR-24 4F4S 1 SOURCE REVDAT 4 13-SEP-23 4F4S 1 REMARK LINK REVDAT 3 26-SEP-12 4F4S 1 JRNL REVDAT 2 22-AUG-12 4F4S 1 JRNL REVDAT 1 15-AUG-12 4F4S 0 JRNL AUTH J.SYMERSKY,D.OSOWSKI,D.E.WALTERS,D.M.MUELLER JRNL TITL OLIGOMYCIN FRAMES A COMMON DRUG-BINDING SITE IN THE ATP JRNL TITL 2 SYNTHASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 13961 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22869738 JRNL DOI 10.1073/PNAS.1207912109 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 53035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2828 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3219 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5301 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 392 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -1.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6034 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8273 ; 1.181 ; 2.066 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 837 ; 3.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;38.558 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 895 ;13.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 8.820 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1119 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4102 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 48.1731 8.4428 31.9563 REMARK 3 T TENSOR REMARK 3 T11: 0.0144 T22: 0.0329 REMARK 3 T33: 0.0566 T12: 0.0057 REMARK 3 T13: -0.0123 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.8219 L22: 0.6048 REMARK 3 L33: 12.1049 L12: 0.0584 REMARK 3 L13: -1.4088 L23: -0.8813 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.1528 S13: 0.0733 REMARK 3 S21: 0.0891 S22: 0.0385 S23: -0.0344 REMARK 3 S31: -0.1763 S32: 0.2207 S33: -0.0433 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 50.6378 16.2729 28.0280 REMARK 3 T TENSOR REMARK 3 T11: 0.0615 T22: 0.0758 REMARK 3 T33: 0.1200 T12: -0.0174 REMARK 3 T13: -0.0092 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.5515 L22: 0.7242 REMARK 3 L33: 15.4055 L12: 0.2260 REMARK 3 L13: -1.2695 L23: -1.5030 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.1650 S13: 0.0209 REMARK 3 S21: 0.1228 S22: -0.0486 S23: -0.0668 REMARK 3 S31: -0.1658 S32: 0.6622 S33: 0.0594 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 41 REMARK 3 ORIGIN FOR THE GROUP (A): 41.2095 12.8698 31.9539 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.0412 REMARK 3 T33: 0.0652 T12: -0.0026 REMARK 3 T13: 0.0018 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.8240 L22: 0.7042 REMARK 3 L33: 15.0796 L12: 0.0914 REMARK 3 L13: -1.2961 L23: -1.9114 REMARK 3 S TENSOR REMARK 3 S11: 0.0893 S12: -0.1499 S13: 0.0780 REMARK 3 S21: 0.0963 S22: 0.0822 S23: 0.0303 REMARK 3 S31: -0.1680 S32: 0.0335 S33: -0.1715 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5893 20.7572 28.4743 REMARK 3 T TENSOR REMARK 3 T11: 0.0791 T22: 0.0439 REMARK 3 T33: 0.1169 T12: -0.0103 REMARK 3 T13: -0.0008 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.6854 L22: 0.7935 REMARK 3 L33: 13.6008 L12: -0.0157 REMARK 3 L13: -0.4424 L23: -1.8507 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.1701 S13: 0.1212 REMARK 3 S21: 0.1561 S22: 0.0011 S23: 0.0164 REMARK 3 S31: -0.7232 S32: 0.1819 S33: -0.0036 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 41 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0073 12.3523 32.0651 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.0371 REMARK 3 T33: 0.0744 T12: 0.0028 REMARK 3 T13: 0.0052 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.6750 L22: 0.6393 REMARK 3 L33: 15.0917 L12: 0.0489 REMARK 3 L13: 0.1942 L23: -1.6584 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: -0.1350 S13: 0.0322 REMARK 3 S21: 0.1151 S22: 0.0480 S23: 0.0701 REMARK 3 S31: -0.1548 S32: 0.0099 S33: -0.1033 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 42 C 75 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3972 17.1864 28.4715 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0523 REMARK 3 T33: 0.1189 T12: 0.0280 REMARK 3 T13: 0.0007 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.7009 L22: 0.5189 REMARK 3 L33: 15.1225 L12: -0.0030 REMARK 3 L13: 0.7812 L23: -1.8010 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.1519 S13: 0.0662 REMARK 3 S21: 0.1702 S22: 0.0408 S23: 0.0410 REMARK 3 S31: -0.6939 S32: -0.0897 S33: -0.0228 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 41 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6863 7.1151 31.9921 REMARK 3 T TENSOR REMARK 3 T11: 0.0351 T22: 0.0454 REMARK 3 T33: 0.0751 T12: 0.0056 REMARK 3 T13: 0.0103 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.7744 L22: 0.7095 REMARK 3 L33: 14.4843 L12: -0.0545 REMARK 3 L13: 0.7427 L23: -1.4378 REMARK 3 S TENSOR REMARK 3 S11: 0.0932 S12: -0.1307 S13: 0.0154 REMARK 3 S21: 0.1219 S22: 0.1097 S23: 0.0658 REMARK 3 S31: -0.0677 S32: -0.0114 S33: -0.2029 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 42 D 75 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4290 7.1931 28.8376 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: 0.0900 REMARK 3 T33: 0.1184 T12: 0.0219 REMARK 3 T13: 0.0128 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.5800 L22: 0.4191 REMARK 3 L33: 13.3215 L12: 0.0015 REMARK 3 L13: 1.3064 L23: -0.8644 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: -0.1807 S13: 0.0350 REMARK 3 S21: 0.1099 S22: -0.0055 S23: 0.0778 REMARK 3 S31: -0.3960 S32: -0.5325 S33: 0.0120 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 41 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5122 -0.8284 32.1383 REMARK 3 T TENSOR REMARK 3 T11: 0.0317 T22: 0.0529 REMARK 3 T33: 0.0704 T12: 0.0076 REMARK 3 T13: 0.0180 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.7960 L22: 0.6979 REMARK 3 L33: 15.5128 L12: -0.1507 REMARK 3 L13: 1.6345 L23: -0.2709 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: -0.1643 S13: -0.0239 REMARK 3 S21: 0.1279 S22: 0.1257 S23: 0.0931 REMARK 3 S31: -0.0473 S32: -0.1280 S33: -0.1705 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 42 E 75 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7678 -5.6123 28.5088 REMARK 3 T TENSOR REMARK 3 T11: 0.0342 T22: 0.1161 REMARK 3 T33: 0.1253 T12: -0.0281 REMARK 3 T13: 0.0169 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.4103 L22: 0.6511 REMARK 3 L33: 14.5488 L12: -0.0452 REMARK 3 L13: 2.0871 L23: 0.2567 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.1936 S13: -0.0169 REMARK 3 S21: 0.1373 S22: -0.0558 S23: 0.0805 REMARK 3 S31: 0.0151 S32: -0.8086 S33: 0.0485 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 1 K 41 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4864 27.6040 31.9374 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.0605 REMARK 3 T33: 0.0653 T12: -0.0346 REMARK 3 T13: 0.0083 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.9255 L22: 0.7389 REMARK 3 L33: 8.9304 L12: 0.2872 REMARK 3 L13: 0.6838 L23: 1.1061 REMARK 3 S TENSOR REMARK 3 S11: 0.1590 S12: -0.2307 S13: -0.0671 REMARK 3 S21: 0.1861 S22: -0.0397 S23: 0.0247 REMARK 3 S31: 0.2891 S32: -0.1016 S33: -0.1193 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 42 K 75 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4689 19.3737 28.7293 REMARK 3 T TENSOR REMARK 3 T11: 0.1161 T22: 0.1574 REMARK 3 T33: 0.1191 T12: -0.0749 REMARK 3 T13: 0.0090 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.2668 L22: 0.6502 REMARK 3 L33: 13.4193 L12: -0.0732 REMARK 3 L13: 0.1043 L23: 1.5445 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.1614 S13: -0.0233 REMARK 3 S21: 0.1961 S22: -0.1171 S23: 0.0215 REMARK 3 S31: 0.4837 S32: -0.5614 S33: 0.1268 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 41 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9237 24.5781 31.8681 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.0725 REMARK 3 T33: 0.0825 T12: -0.0337 REMARK 3 T13: -0.0162 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.7099 L22: 0.7273 REMARK 3 L33: 13.9366 L12: 0.2847 REMARK 3 L13: 1.0010 L23: 1.8687 REMARK 3 S TENSOR REMARK 3 S11: 0.1572 S12: -0.2120 S13: -0.0529 REMARK 3 S21: 0.1855 S22: -0.0162 S23: -0.0582 REMARK 3 S31: 0.2810 S32: -0.0928 S33: -0.1411 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 42 L 75 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0377 17.2453 28.8045 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.1013 REMARK 3 T33: 0.1452 T12: -0.0411 REMARK 3 T13: -0.0175 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 0.7338 L22: 0.5067 REMARK 3 L33: 15.5946 L12: -0.0335 REMARK 3 L13: 0.0652 L23: 2.6501 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.2282 S13: -0.1134 REMARK 3 S21: 0.2129 S22: -0.0516 S23: -0.0275 REMARK 3 S31: 0.8879 S32: -0.1391 S33: 0.0659 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 1 M 41 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0446 26.5466 32.2231 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.0761 REMARK 3 T33: 0.0846 T12: -0.0547 REMARK 3 T13: -0.0265 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 0.6132 L22: 0.8259 REMARK 3 L33: 14.1251 L12: 0.0791 REMARK 3 L13: -0.4728 L23: 1.6034 REMARK 3 S TENSOR REMARK 3 S11: 0.1898 S12: -0.2081 S13: -0.0682 REMARK 3 S21: 0.1940 S22: 0.0146 S23: -0.0538 REMARK 3 S31: 0.1490 S32: 0.1944 S33: -0.2044 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 42 M 75 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5586 23.1977 28.1522 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.0890 REMARK 3 T33: 0.1350 T12: -0.0012 REMARK 3 T13: -0.0329 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 1.2711 L22: 1.1270 REMARK 3 L33: 19.1346 L12: 0.1899 REMARK 3 L13: -1.0205 L23: 2.5229 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: -0.2958 S13: -0.1093 REMARK 3 S21: 0.2723 S22: -0.0515 S23: -0.0757 REMARK 3 S31: 0.7628 S32: 0.2981 S33: 0.0062 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 1 N 41 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4057 32.8565 32.6788 REMARK 3 T TENSOR REMARK 3 T11: 0.0673 T22: 0.0766 REMARK 3 T33: 0.0825 T12: -0.0383 REMARK 3 T13: -0.0158 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.8659 L22: 0.6575 REMARK 3 L33: 11.0828 L12: 0.0697 REMARK 3 L13: -1.3076 L23: 1.2604 REMARK 3 S TENSOR REMARK 3 S11: 0.1293 S12: -0.2295 S13: -0.0013 REMARK 3 S21: 0.1843 S22: -0.0199 S23: -0.0579 REMARK 3 S31: 0.2767 S32: 0.1330 S33: -0.1094 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 42 N 75 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4216 34.3446 28.8159 REMARK 3 T TENSOR REMARK 3 T11: 0.0706 T22: 0.0796 REMARK 3 T33: 0.1275 T12: -0.0141 REMARK 3 T13: -0.0405 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 1.3026 L22: 0.6589 REMARK 3 L33: 14.9666 L12: -0.0254 REMARK 3 L13: -1.3204 L23: 0.8082 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: -0.2805 S13: -0.0886 REMARK 3 S21: 0.1867 S22: -0.0133 S23: -0.0573 REMARK 3 S31: 0.5484 S32: 0.5544 S33: -0.0442 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 1 O 41 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9696 41.1907 32.3430 REMARK 3 T TENSOR REMARK 3 T11: 0.0559 T22: 0.0614 REMARK 3 T33: 0.0727 T12: -0.0423 REMARK 3 T13: -0.0216 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.0167 L22: 0.7519 REMARK 3 L33: 10.6683 L12: -0.0225 REMARK 3 L13: -1.7896 L23: 0.5040 REMARK 3 S TENSOR REMARK 3 S11: 0.1134 S12: -0.2252 S13: 0.0041 REMARK 3 S21: 0.1713 S22: -0.0482 S23: -0.0693 REMARK 3 S31: 0.0453 S32: 0.1517 S33: -0.0652 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 42 O 75 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5135 47.1106 28.7013 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.1078 REMARK 3 T33: 0.1156 T12: -0.0495 REMARK 3 T13: -0.0254 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.0485 L22: 0.7492 REMARK 3 L33: 15.0248 L12: 0.1764 REMARK 3 L13: -2.4694 L23: -0.5725 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.2761 S13: -0.0059 REMARK 3 S21: 0.1932 S22: -0.1301 S23: -0.0542 REMARK 3 S31: 0.0154 S32: 0.6110 S33: 0.1122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4F4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65200 REMARK 200 R SYM FOR SHELL (I) : 0.65200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3UD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 68% MPD, 8% PROPYLENE GLYCOL, 0.3M REMARK 280 NACL, 2MM MGSO4, 50MM MES PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.83700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 37.83700 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 244.10250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.83700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.05125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.83700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 366.15375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.83700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 366.15375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.83700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.05125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 37.83700 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 37.83700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 244.10250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 37.83700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 37.83700 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 244.10250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 37.83700 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 366.15375 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 37.83700 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 122.05125 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 37.83700 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 122.05125 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 37.83700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 366.15375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 37.83700 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 37.83700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 244.10250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -416.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.67400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -419.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, M, N, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 75.67400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 75 REMARK 465 VAL A 76 REMARK 465 VAL B 76 REMARK 465 VAL C 76 REMARK 465 VAL D 76 REMARK 465 VAL E 76 REMARK 465 VAL K 76 REMARK 465 VAL L 76 REMARK 465 VAL M 76 REMARK 465 VAL N 76 REMARK 465 VAL O 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 FME A 1 CG SD CE REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 FME B 1 CG SD CE REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 FME C 1 SD CE REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 LEU C 63 CG CD1 CD2 REMARK 470 FME D 1 CG SD CE REMARK 470 GLN D 2 CG CD OE1 NE2 REMARK 470 LYS D 44 CD CE NZ REMARK 470 FME E 1 SD CE REMARK 470 GLN E 2 CG CD OE1 NE2 REMARK 470 FME K 1 CG SD CE REMARK 470 GLN K 2 CG CD OE1 NE2 REMARK 470 LEU K 5 CG CD1 CD2 REMARK 470 FME L 1 CG SD CE REMARK 470 GLN L 2 CG CD OE1 NE2 REMARK 470 LYS L 8 CG CD CE NZ REMARK 470 FME M 1 CG SD CE REMARK 470 GLN M 2 CG CD OE1 NE2 REMARK 470 LEU M 63 CG CD1 CD2 REMARK 470 PHE M 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN N 2 CD OE1 NE2 REMARK 470 FME O 1 SD CE REMARK 470 GLN O 2 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 FME B 1 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 FME E 1 O - C - N ANGL. DEV. = -12.0 DEGREES REMARK 500 FME L 1 CA - C - N ANGL. DEV. = 13.9 DEGREES REMARK 500 FME L 1 O - C - N ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE M 74 56.76 -110.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 FME E 1 GLN E 2 142.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 FME B 1 -16.59 REMARK 500 FME E 1 -15.13 REMARK 500 FME L 1 -18.26 REMARK 500 FME N 1 -12.84 REMARK 500 FME O 1 -11.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EFO B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EFO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EFO E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EFO K 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EFO K 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EFO M 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EFO O 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U2F RELATED DB: PDB REMARK 900 YEAST C10 RING AT PH 8.3 REMARK 900 RELATED ID: 3U2Y RELATED DB: PDB REMARK 900 YEAST C10 RING AT PH 6.1 REMARK 900 RELATED ID: 3UD0 RELATED DB: PDB REMARK 900 YEAST C10 RING AT PH 5.5 REMARK 900 RELATED ID: 3U32 RELATED DB: PDB REMARK 900 YEAST C10 RING REACTED WITH DCCD DBREF 4F4S A 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 4F4S B 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 4F4S C 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 4F4S D 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 4F4S E 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 4F4S K 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 4F4S L 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 4F4S M 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 4F4S N 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 4F4S O 1 76 UNP P61829 ATP9_YEAST 1 76 SEQRES 1 A 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 A 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 A 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 A 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 A 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 A 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 B 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 B 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 B 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 B 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 B 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 B 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 C 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 C 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 C 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 C 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 C 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 C 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 D 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 D 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 D 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 D 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 D 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 D 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 E 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 E 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 E 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 E 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 E 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 E 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 K 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 K 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 K 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 K 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 K 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 K 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 L 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 L 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 L 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 L 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 L 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 L 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 M 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 M 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 M 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 M 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 M 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 M 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 N 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 N 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 N 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 N 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 N 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 N 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 O 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 O 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 O 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 O 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 O 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 O 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL MODRES 4F4S FME A 1 MET N-FORMYLMETHIONINE MODRES 4F4S FME B 1 MET N-FORMYLMETHIONINE MODRES 4F4S FME C 1 MET N-FORMYLMETHIONINE MODRES 4F4S FME D 1 MET N-FORMYLMETHIONINE MODRES 4F4S FME E 1 MET N-FORMYLMETHIONINE MODRES 4F4S FME K 1 MET N-FORMYLMETHIONINE MODRES 4F4S FME L 1 MET N-FORMYLMETHIONINE MODRES 4F4S FME M 1 MET N-FORMYLMETHIONINE MODRES 4F4S FME N 1 MET N-FORMYLMETHIONINE MODRES 4F4S FME O 1 MET N-FORMYLMETHIONINE HET FME A 1 7 HET FME B 1 7 HET FME C 1 8 HET FME D 1 7 HET FME E 1 8 HET FME K 1 7 HET FME L 1 7 HET FME M 1 7 HET FME N 1 10 HET FME O 1 8 HET EFO B 101 56 HET EFO B 102 56 HET EFO E 101 56 HET EFO K 101 56 HET EFO K 102 56 HET EFO M 101 56 HET EFO O 101 56 HETNAM FME N-FORMYLMETHIONINE HETNAM EFO OLIGOMYCIN A HETSYN EFO (1R,4E,5'S,6S,6'S,7R,8S,10R,11R,12S,14R,15S,16R,18E, HETSYN 2 EFO 20E,22R,25S,27R,28S,29R)-22-ETHYL-7,11,14,15- HETSYN 3 EFO TETRAHYDROXY-6'-[(2R)-2-HYDROXYPROPYL]-5',6,8,10,12, HETSYN 4 EFO 14,16,28,29-NONAMETHYL-3',4',5',6'-TETRAHYDRO-3H,9H, HETSYN 5 EFO 13H-SPIRO[2,26-DIOXABICYCLO[23.3.1]NONACOSA-4,18,20- HETSYN 6 EFO TRIENE-27,2'-PYRAN]-3,9,13-TRIONE FORMUL 1 FME 10(C6 H11 N O3 S) FORMUL 11 EFO 7(C45 H74 O11) FORMUL 18 HOH *150(H2 O) HELIX 1 1 FME A 1 SER A 15 1 15 HELIX 2 2 GLY A 18 ASN A 40 1 23 HELIX 3 3 ILE A 43 PHE A 74 1 32 HELIX 4 4 GLN B 2 SER B 15 1 14 HELIX 5 5 GLY B 18 ASN B 40 1 23 HELIX 6 6 ILE B 43 GLY B 75 1 33 HELIX 7 7 GLN C 2 SER C 15 1 14 HELIX 8 8 GLY C 18 ASN C 40 1 23 HELIX 9 9 ILE C 43 GLY C 75 1 33 HELIX 10 10 GLN D 2 SER D 15 1 14 HELIX 11 11 GLY D 18 ASN D 40 1 23 HELIX 12 12 ILE D 43 GLY D 75 1 33 HELIX 13 13 GLN E 2 SER E 15 1 14 HELIX 14 14 GLY E 18 ASN E 40 1 23 HELIX 15 15 ILE E 43 GLY E 75 1 33 HELIX 16 16 GLN K 2 SER K 15 1 14 HELIX 17 17 GLY K 18 ASN K 40 1 23 HELIX 18 18 ILE K 43 GLY K 75 1 33 HELIX 19 19 GLN L 2 SER L 15 1 14 HELIX 20 20 GLY L 18 ASN L 40 1 23 HELIX 21 21 ILE L 43 GLY L 75 1 33 HELIX 22 22 GLN M 2 SER M 15 1 14 HELIX 23 23 GLY M 18 ASN M 40 1 23 HELIX 24 24 ILE M 43 PHE M 74 1 32 HELIX 25 25 GLN N 2 SER N 15 1 14 HELIX 26 26 GLY N 18 ASN N 40 1 23 HELIX 27 27 ILE N 43 GLY N 75 1 33 HELIX 28 28 GLN O 2 SER O 15 1 14 HELIX 29 29 GLY O 18 ASN O 40 1 23 HELIX 30 30 ILE O 43 GLY O 75 1 33 LINK C FME A 1 N GLN A 2 1555 1555 1.43 LINK C FME B 1 N GLN B 2 1555 1555 1.42 LINK C FME C 1 N GLN C 2 1555 1555 1.42 LINK C FME D 1 N GLN D 2 1555 1555 1.43 LINK C FME E 1 N GLN E 2 1555 1555 1.42 LINK C FME K 1 N GLN K 2 1555 1555 1.42 LINK C FME L 1 N GLN L 2 1555 1555 1.43 LINK C FME M 1 N GLN M 2 1555 1555 1.42 LINK C FME N 1 N GLN N 2 1555 1555 1.42 LINK C FME O 1 N GLN O 2 1555 1555 1.42 SITE 1 AC1 7 ALA B 56 ALA B 60 PHE B 64 ILE C 52 SITE 2 AC1 7 ALA C 56 GLU C 59 LEU C 63 SITE 1 AC2 12 LEU A 57 ALA A 60 PHE A 64 ILE B 52 SITE 2 AC2 12 ALA B 56 GLU B 59 ALA B 60 LEU B 63 SITE 3 AC2 12 HOH B 206 EFO K 102 EFO O 101 HOH O 202 SITE 1 AC3 9 ALA D 56 ALA D 60 PHE E 55 ALA E 56 SITE 2 AC3 9 GLU E 59 ALA E 60 LEU E 63 HOH E 209 SITE 3 AC3 9 HOH E 213 SITE 1 AC4 10 ALA K 56 LEU K 57 ALA K 60 PHE K 64 SITE 2 AC4 10 EFO K 102 ALA L 56 GLU L 59 ALA L 60 SITE 3 AC4 10 LEU L 63 EFO M 101 SITE 1 AC5 15 ILE A 52 PHE A 55 ALA A 56 GLU A 59 SITE 2 AC5 15 EFO B 102 LEU E 53 LEU E 57 ILE K 52 SITE 3 AC5 15 PHE K 55 ALA K 56 GLU K 59 LEU K 63 SITE 4 AC5 15 EFO K 101 ALA O 60 PHE O 64 SITE 1 AC6 10 PHE D 55 EFO K 101 ALA L 56 ALA L 60 SITE 2 AC6 10 PHE L 64 PHE M 55 ALA M 56 GLU M 59 SITE 3 AC6 10 ALA M 60 LEU M 63 SITE 1 AC7 10 EFO B 102 ALA N 56 LEU N 57 ALA N 60 SITE 2 AC7 10 ILE O 52 ALA O 56 GLU O 59 LEU O 63 SITE 3 AC7 10 HOH O 202 HOH O 213 CRYST1 75.674 75.674 488.205 90.00 90.00 90.00 I 41 2 2 160 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013215 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002048 0.00000 HETATM 1 N FME A 1 46.852 12.882 64.420 1.00 49.28 N ANISOU 1 N FME A 1 7816 7240 3667 -358 -54 -977 N HETATM 2 CN FME A 1 45.639 12.330 64.253 1.00 48.32 C ANISOU 2 CN FME A 1 7582 7043 3731 32 19 -873 C HETATM 3 O1 FME A 1 45.182 12.062 63.145 1.00 46.52 O ANISOU 3 O1 FME A 1 7236 6744 3695 184 44 -805 O HETATM 4 CA FME A 1 47.770 13.152 63.317 1.00 48.78 C ANISOU 4 CA FME A 1 7709 7207 3617 -633 -115 -1008 C HETATM 5 CB FME A 1 49.043 13.794 63.855 1.00 51.98 C ANISOU 5 CB FME A 1 8226 7824 3700 -1149 -193 -1127 C HETATM 6 C FME A 1 48.143 11.922 62.537 1.00 45.87 C ANISOU 6 C FME A 1 6849 7091 3486 -513 -203 -873 C HETATM 7 O FME A 1 48.398 12.056 61.319 1.00 44.35 O ANISOU 7 O FME A 1 6622 6832 3398 -573 -211 -866 O