PDB Short entry for 4FGW HEADER OXIDOREDUCTASE 05-JUN-12 4FGW TITLE STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE, GPD1, FROM TITLE 2 SACHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)] 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: GPD1, DAR1, HOR1, OSG1, YDL022W, D2830; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS DEHYDROGENASE, NAD+, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.APARICIO,N.MUNMUN,X.CARPENA,I.FITA,P.LOEWEN REVDAT 3 13-SEP-23 4FGW 1 REMARK REVDAT 2 23-JAN-13 4FGW 1 JRNL REVDAT 1 07-NOV-12 4FGW 0 JRNL AUTH D.A.ALARCON,M.NANDI,X.CARPENA,I.FITA,P.C.LOEWEN JRNL TITL STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE (GPD1) FROM JRNL TITL 2 SACCHAROMYCES CEREVISIAE AT 2.45A RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 1279 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 23143232 JRNL DOI 10.1107/S1744309112037736 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 29348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1492 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2715 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1992 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2572 REMARK 3 BIN R VALUE (WORKING SET) : 0.1982 REMARK 3 BIN FREE R VALUE : 0.2177 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5462 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.20290 REMARK 3 B22 (A**2) : 4.20290 REMARK 3 B33 (A**2) : -8.40570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.479 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.426 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5582 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7576 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1906 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 148 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 806 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5582 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 728 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6439 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.64 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.88 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.2953 -15.6651 -19.2026 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: -0.0073 REMARK 3 T33: -0.1196 T12: 0.0444 REMARK 3 T13: -0.1044 T23: -0.2278 REMARK 3 L TENSOR REMARK 3 L11: 4.2131 L22: 3.8697 REMARK 3 L33: 3.0448 L12: 0.5863 REMARK 3 L13: 0.6546 L23: 1.4949 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.5871 S13: -0.5442 REMARK 3 S21: -0.6884 S22: -0.3692 S23: 0.3092 REMARK 3 S31: 0.0189 S32: -0.6125 S33: 0.3047 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 35.4579 10.3296 -2.2032 REMARK 3 T TENSOR REMARK 3 T11: -0.0376 T22: -0.1216 REMARK 3 T33: 0.3261 T12: -0.0083 REMARK 3 T13: -0.2026 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 2.8610 L22: 4.9661 REMARK 3 L33: 3.2142 L12: 0.3101 REMARK 3 L13: 0.7664 L23: 0.4452 REMARK 3 S TENSOR REMARK 3 S11: -0.2751 S12: -0.1989 S13: 0.8180 REMARK 3 S21: -0.1300 S22: -0.1102 S23: -1.0101 REMARK 3 S31: -0.4808 S32: 0.3634 S33: 0.3852 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29348 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PHASER REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1X0V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% POLYETHYLENE GLYCOL 8000, 0.1 M REMARK 280 TRIS-HCL PH 8.5 AND 0.3 M MGCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.20500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.80750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.60250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 ARG A 7 REMARK 465 LEU A 8 REMARK 465 ASN A 9 REMARK 465 LEU A 10 REMARK 465 THR A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 HIS A 14 REMARK 465 LEU A 15 REMARK 465 ASN A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 ARG A 19 REMARK 465 LYS A 20 REMARK 465 ARG A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 VAL A 26 REMARK 465 SER A 27 REMARK 465 LEU A 28 REMARK 465 LYS A 29 REMARK 465 ALA A 30 REMARK 465 ALA A 31 REMARK 465 GLU A 32 REMARK 465 LEU A 386 REMARK 465 ASP A 387 REMARK 465 LEU A 388 REMARK 465 HIS A 389 REMARK 465 GLU A 390 REMARK 465 ASP A 391 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ASP B 6 REMARK 465 ARG B 7 REMARK 465 LEU B 8 REMARK 465 ASN B 9 REMARK 465 LEU B 10 REMARK 465 THR B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 HIS B 14 REMARK 465 LEU B 15 REMARK 465 ASN B 16 REMARK 465 ALA B 17 REMARK 465 GLY B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 ARG B 21 REMARK 465 SER B 22 REMARK 465 SER B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 VAL B 26 REMARK 465 SER B 27 REMARK 465 LEU B 28 REMARK 465 LYS B 29 REMARK 465 ALA B 30 REMARK 465 ALA B 31 REMARK 465 GLU B 32 REMARK 465 LEU B 386 REMARK 465 ASP B 387 REMARK 465 LEU B 388 REMARK 465 HIS B 389 REMARK 465 GLU B 390 REMARK 465 ASP B 391 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 285 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG B 207 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG B 207 N - CA - C ANGL. DEV. = -21.7 DEGREES REMARK 500 GLY B 208 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 PRO B 285 C - N - CD ANGL. DEV. = -13.8 DEGREES REMARK 500 PRO B 285 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 42 -9.22 69.15 REMARK 500 ASN A 44 -72.28 -46.12 REMARK 500 ILE A 77 -95.37 -102.91 REMARK 500 ASN A 78 45.35 -70.40 REMARK 500 ASN A 87 42.29 -76.29 REMARK 500 THR A 88 117.36 106.11 REMARK 500 PRO A 102 -90.29 -36.03 REMARK 500 ASP A 103 -35.57 -179.47 REMARK 500 LYS A 116 102.76 -41.37 REMARK 500 ASP A 117 102.32 17.96 REMARK 500 VAL A 141 -79.81 -88.24 REMARK 500 ASP A 142 130.91 131.09 REMARK 500 ARG A 207 -62.66 -107.26 REMARK 500 GLU A 209 121.73 55.63 REMARK 500 ASP A 234 82.16 -58.90 REMARK 500 PRO A 285 -15.54 -30.43 REMARK 500 ASN A 334 -96.86 45.92 REMARK 500 ASN A 373 50.26 -118.38 REMARK 500 PRO A 375 -18.70 -42.43 REMARK 500 MET A 376 -40.79 73.39 REMARK 500 SER B 42 -2.01 63.44 REMARK 500 ASN B 44 -70.70 -50.24 REMARK 500 ASN B 87 42.56 -76.38 REMARK 500 THR B 88 117.41 105.80 REMARK 500 PRO B 102 -90.50 -35.83 REMARK 500 ASP B 103 -40.33 -179.29 REMARK 500 LYS B 116 101.54 -45.58 REMARK 500 VAL B 141 -82.15 -88.58 REMARK 500 ASP B 142 122.92 140.60 REMARK 500 GLU B 209 122.09 55.16 REMARK 500 ASP B 234 81.96 -58.04 REMARK 500 GLU B 286 -57.39 98.20 REMARK 500 ASN B 334 -98.60 21.50 REMARK 500 ASN B 373 50.29 -110.34 REMARK 500 PRO B 375 -19.21 -42.12 REMARK 500 MET B 376 -41.01 73.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 284 PRO B 285 -148.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 4FGW A 1 391 UNP Q00055 GPD1_YEAST 1 391 DBREF 4FGW B 1 391 UNP Q00055 GPD1_YEAST 1 391 SEQRES 1 A 391 MET SER ALA ALA ALA ASP ARG LEU ASN LEU THR SER GLY SEQRES 2 A 391 HIS LEU ASN ALA GLY ARG LYS ARG SER SER SER SER VAL SEQRES 3 A 391 SER LEU LYS ALA ALA GLU LYS PRO PHE LYS VAL THR VAL SEQRES 4 A 391 ILE GLY SER GLY ASN TRP GLY THR THR ILE ALA LYS VAL SEQRES 5 A 391 VAL ALA GLU ASN CYS LYS GLY TYR PRO GLU VAL PHE ALA SEQRES 6 A 391 PRO ILE VAL GLN MET TRP VAL PHE GLU GLU GLU ILE ASN SEQRES 7 A 391 GLY GLU LYS LEU THR GLU ILE ILE ASN THR ARG HIS GLN SEQRES 8 A 391 ASN VAL LYS TYR LEU PRO GLY ILE THR LEU PRO ASP ASN SEQRES 9 A 391 LEU VAL ALA ASN PRO ASP LEU ILE ASP SER VAL LYS ASP SEQRES 10 A 391 VAL ASP ILE ILE VAL PHE ASN ILE PRO HIS GLN PHE LEU SEQRES 11 A 391 PRO ARG ILE CYS SER GLN LEU LYS GLY HIS VAL ASP SER SEQRES 12 A 391 HIS VAL ARG ALA ILE SER CYS LEU LYS GLY PHE GLU VAL SEQRES 13 A 391 GLY ALA LYS GLY VAL GLN LEU LEU SER SER TYR ILE THR SEQRES 14 A 391 GLU GLU LEU GLY ILE GLN CYS GLY ALA LEU SER GLY ALA SEQRES 15 A 391 ASN ILE ALA THR GLU VAL ALA GLN GLU HIS TRP SER GLU SEQRES 16 A 391 THR THR VAL ALA TYR HIS ILE PRO LYS ASP PHE ARG GLY SEQRES 17 A 391 GLU GLY LYS ASP VAL ASP HIS LYS VAL LEU LYS ALA LEU SEQRES 18 A 391 PHE HIS ARG PRO TYR PHE HIS VAL SER VAL ILE GLU ASP SEQRES 19 A 391 VAL ALA GLY ILE SER ILE CYS GLY ALA LEU LYS ASN VAL SEQRES 20 A 391 VAL ALA LEU GLY CYS GLY PHE VAL GLU GLY LEU GLY TRP SEQRES 21 A 391 GLY ASN ASN ALA SER ALA ALA ILE GLN ARG VAL GLY LEU SEQRES 22 A 391 GLY GLU ILE ILE ARG PHE GLY GLN MET PHE PHE PRO GLU SEQRES 23 A 391 SER ARG GLU GLU THR TYR TYR GLN GLU SER ALA GLY VAL SEQRES 24 A 391 ALA ASP LEU ILE THR THR CYS ALA GLY GLY ARG ASN VAL SEQRES 25 A 391 LYS VAL ALA ARG LEU MET ALA THR SER GLY LYS ASP ALA SEQRES 26 A 391 TRP GLU CYS GLU LYS GLU LEU LEU ASN GLY GLN SER ALA SEQRES 27 A 391 GLN GLY LEU ILE THR CYS LYS GLU VAL HIS GLU TRP LEU SEQRES 28 A 391 GLU THR CYS GLY SER VAL GLU ASP PHE PRO LEU PHE GLU SEQRES 29 A 391 ALA VAL TYR GLN ILE VAL TYR ASN ASN TYR PRO MET LYS SEQRES 30 A 391 ASN LEU PRO ASP MET ILE GLU GLU LEU ASP LEU HIS GLU SEQRES 31 A 391 ASP SEQRES 1 B 391 MET SER ALA ALA ALA ASP ARG LEU ASN LEU THR SER GLY SEQRES 2 B 391 HIS LEU ASN ALA GLY ARG LYS ARG SER SER SER SER VAL SEQRES 3 B 391 SER LEU LYS ALA ALA GLU LYS PRO PHE LYS VAL THR VAL SEQRES 4 B 391 ILE GLY SER GLY ASN TRP GLY THR THR ILE ALA LYS VAL SEQRES 5 B 391 VAL ALA GLU ASN CYS LYS GLY TYR PRO GLU VAL PHE ALA SEQRES 6 B 391 PRO ILE VAL GLN MET TRP VAL PHE GLU GLU GLU ILE ASN SEQRES 7 B 391 GLY GLU LYS LEU THR GLU ILE ILE ASN THR ARG HIS GLN SEQRES 8 B 391 ASN VAL LYS TYR LEU PRO GLY ILE THR LEU PRO ASP ASN SEQRES 9 B 391 LEU VAL ALA ASN PRO ASP LEU ILE ASP SER VAL LYS ASP SEQRES 10 B 391 VAL ASP ILE ILE VAL PHE ASN ILE PRO HIS GLN PHE LEU SEQRES 11 B 391 PRO ARG ILE CYS SER GLN LEU LYS GLY HIS VAL ASP SER SEQRES 12 B 391 HIS VAL ARG ALA ILE SER CYS LEU LYS GLY PHE GLU VAL SEQRES 13 B 391 GLY ALA LYS GLY VAL GLN LEU LEU SER SER TYR ILE THR SEQRES 14 B 391 GLU GLU LEU GLY ILE GLN CYS GLY ALA LEU SER GLY ALA SEQRES 15 B 391 ASN ILE ALA THR GLU VAL ALA GLN GLU HIS TRP SER GLU SEQRES 16 B 391 THR THR VAL ALA TYR HIS ILE PRO LYS ASP PHE ARG GLY SEQRES 17 B 391 GLU GLY LYS ASP VAL ASP HIS LYS VAL LEU LYS ALA LEU SEQRES 18 B 391 PHE HIS ARG PRO TYR PHE HIS VAL SER VAL ILE GLU ASP SEQRES 19 B 391 VAL ALA GLY ILE SER ILE CYS GLY ALA LEU LYS ASN VAL SEQRES 20 B 391 VAL ALA LEU GLY CYS GLY PHE VAL GLU GLY LEU GLY TRP SEQRES 21 B 391 GLY ASN ASN ALA SER ALA ALA ILE GLN ARG VAL GLY LEU SEQRES 22 B 391 GLY GLU ILE ILE ARG PHE GLY GLN MET PHE PHE PRO GLU SEQRES 23 B 391 SER ARG GLU GLU THR TYR TYR GLN GLU SER ALA GLY VAL SEQRES 24 B 391 ALA ASP LEU ILE THR THR CYS ALA GLY GLY ARG ASN VAL SEQRES 25 B 391 LYS VAL ALA ARG LEU MET ALA THR SER GLY LYS ASP ALA SEQRES 26 B 391 TRP GLU CYS GLU LYS GLU LEU LEU ASN GLY GLN SER ALA SEQRES 27 B 391 GLN GLY LEU ILE THR CYS LYS GLU VAL HIS GLU TRP LEU SEQRES 28 B 391 GLU THR CYS GLY SER VAL GLU ASP PHE PRO LEU PHE GLU SEQRES 29 B 391 ALA VAL TYR GLN ILE VAL TYR ASN ASN TYR PRO MET LYS SEQRES 30 B 391 ASN LEU PRO ASP MET ILE GLU GLU LEU ASP LEU HIS GLU SEQRES 31 B 391 ASP FORMUL 3 HOH *54(H2 O) HELIX 1 1 GLY A 43 TYR A 60 1 18 HELIX 2 2 LYS A 81 ASN A 87 1 7 HELIX 3 3 ASP A 110 LYS A 116 1 7 HELIX 4 4 PRO A 126 GLN A 128 5 3 HELIX 5 5 PHE A 129 LYS A 138 1 10 HELIX 6 6 LEU A 163 GLY A 173 1 11 HELIX 7 7 ILE A 184 GLN A 190 1 7 HELIX 8 8 ASP A 214 HIS A 223 1 10 HELIX 9 9 ASP A 234 LEU A 258 1 25 HELIX 10 10 TRP A 260 PHE A 284 1 25 HELIX 11 11 ARG A 288 GLU A 295 1 8 HELIX 12 12 GLY A 298 GLY A 308 1 11 HELIX 13 13 GLY A 309 SER A 321 1 13 HELIX 14 14 ASP A 324 ASN A 334 1 11 HELIX 15 15 GLN A 339 GLY A 355 1 17 HELIX 16 16 PHE A 360 ASN A 372 1 13 HELIX 17 17 ASN A 378 GLU A 384 1 7 HELIX 18 18 GLY B 43 TYR B 60 1 18 HELIX 19 19 LEU B 82 ASN B 87 1 6 HELIX 20 20 ASP B 110 LYS B 116 1 7 HELIX 21 21 PRO B 126 GLN B 128 5 3 HELIX 22 22 PHE B 129 LYS B 138 1 10 HELIX 23 23 LEU B 163 GLY B 173 1 11 HELIX 24 24 ILE B 184 GLN B 190 1 7 HELIX 25 25 ASP B 214 HIS B 223 1 10 HELIX 26 26 ASP B 234 LEU B 258 1 25 HELIX 27 27 TRP B 260 PHE B 284 1 25 HELIX 28 28 ARG B 288 GLU B 295 1 8 HELIX 29 29 GLY B 298 GLY B 308 1 11 HELIX 30 30 GLY B 309 SER B 321 1 13 HELIX 31 31 ASP B 324 ASN B 334 1 11 HELIX 32 32 GLN B 339 GLY B 355 1 17 HELIX 33 33 PHE B 360 ASN B 372 1 13 HELIX 34 34 ASN B 378 GLU B 384 1 7 SHEET 1 A 8 LEU A 105 ASN A 108 0 SHEET 2 A 8 PHE A 64 TRP A 71 1 N MET A 70 O ASN A 108 SHEET 3 A 8 PHE A 35 ILE A 40 1 N VAL A 39 O GLN A 69 SHEET 4 A 8 ILE A 120 PHE A 123 1 O VAL A 122 N THR A 38 SHEET 5 A 8 ARG A 146 SER A 149 1 O ILE A 148 N PHE A 123 SHEET 6 A 8 GLN A 175 SER A 180 1 O GLN A 175 N ALA A 147 SHEET 7 A 8 SER A 194 ALA A 199 -1 O ALA A 199 N ALA A 178 SHEET 8 A 8 PHE A 227 ILE A 232 1 O ILE A 232 N VAL A 198 SHEET 1 B 2 GLU A 155 GLY A 157 0 SHEET 2 B 2 GLY A 160 GLN A 162 -1 O GLN A 162 N GLU A 155 SHEET 1 C 8 LEU B 105 ASN B 108 0 SHEET 2 C 8 PHE B 64 TRP B 71 1 N MET B 70 O ASN B 108 SHEET 3 C 8 PHE B 35 ILE B 40 1 N VAL B 39 O GLN B 69 SHEET 4 C 8 ILE B 120 PHE B 123 1 O VAL B 122 N THR B 38 SHEET 5 C 8 ARG B 146 SER B 149 1 O ILE B 148 N PHE B 123 SHEET 6 C 8 GLN B 175 SER B 180 1 O GLN B 175 N ALA B 147 SHEET 7 C 8 SER B 194 ALA B 199 -1 O ALA B 199 N ALA B 178 SHEET 8 C 8 PHE B 227 ILE B 232 1 O ILE B 232 N VAL B 198 SHEET 1 D 2 GLU B 76 ILE B 77 0 SHEET 2 D 2 GLU B 80 LYS B 81 -1 O GLU B 80 N ILE B 77 SHEET 1 E 2 GLU B 155 GLY B 157 0 SHEET 2 E 2 GLY B 160 GLN B 162 -1 O GLN B 162 N GLU B 155 CISPEP 1 THR A 88 ARG A 89 0 13.12 CISPEP 2 THR B 88 ARG B 89 0 13.08 CISPEP 3 PRO B 285 GLU B 286 0 17.60 CRYST1 64.420 64.420 198.410 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015523 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005040 0.00000