PDB Short entry for 4FKC HEADER HYDROLASE 13-JUN-12 4FKC TITLE RECOMBINANT PROLIDASE FROM THERMOCOCCUS SIBIRICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS SIBIRICUS; SOURCE 3 ORGANISM_TAXID: 604354; SOURCE 4 STRAIN: MM 739 / DSM 12597; SOURCE 5 GENE: TSIB_0821; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA-GAMI (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE80L KEYWDS PITA-BREAD STRUCTURE, PROLIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.TROFIMOV,E.S.SLUTSKAYA,K.M.POLYAKOV,P.V.DOROVATOVSKII, AUTHOR 2 V.M.GUMEROV,V.O.POPOV REVDAT 3 13-SEP-23 4FKC 1 REMARK SEQADV LINK REVDAT 2 27-MAR-13 4FKC 1 JRNL REVDAT 1 07-NOV-12 4FKC 0 JRNL AUTH A.A.TROFIMOV,E.A.SLUTSKAYA,K.M.POLYAKOV,P.V.DOROVATOVSKII, JRNL AUTH 2 V.M.GUMEROV,V.O.POPOV JRNL TITL INFLUENCE OF INTERMOLECULAR CONTACTS ON THE STRUCTURE OF JRNL TITL 2 RECOMBINANT PROLIDASE FROM THERMOCOCCUS SIBIRICUS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 1275 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 23143231 JRNL DOI 10.1107/S174430911203761X REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1476 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2851 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : -1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.356 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.042 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2935 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3954 ; 1.384 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 6.142 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;34.070 ;24.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 471 ;19.525 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.166 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2247 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1834 ; 0.683 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2941 ; 1.276 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1101 ; 1.799 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1013 ; 2.910 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : KURCHATOV SNC REMARK 200 BEAMLINE : K4.4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9887 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 78.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 2HOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (2MCL): 10.8 MG/ML REMARK 280 TSPROL AND 150 MM NACL IN 50 MM TRIS BUFFER (PH 7.6). RESERVOIR REMARK 280 SOLUTION (2MCL): 100 MM CDCL2 AND 30 % V/V PEG400 IN 100 MM REMARK 280 SODIUM ACETATE BUFFER (PH 4.6), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.61000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.85000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.30500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.85000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.91500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.85000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.30500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.85000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.91500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.61000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 1 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 22 CD CE NZ REMARK 470 LEU A 47 CB CG CD1 CD2 REMARK 470 ARG A 67 CD NE CZ NH1 NH2 REMARK 470 LEU A 68 CG CD1 CD2 REMARK 470 LYS A 71 CD CE NZ REMARK 470 VAL A 80 CG1 CG2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 LYS A 161 NZ REMARK 470 LYS A 174 CE NZ REMARK 470 PHE A 191 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 SER A 251 OG REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 VAL A 280 CG1 CG2 REMARK 470 GLU A 296 CD OE1 OE2 REMARK 470 LYS A 321 CE NZ REMARK 470 LYS A 322 CB CG CD CE NZ REMARK 470 LYS A 325 CD CE NZ REMARK 470 GLN A 339 CD OE1 NE2 REMARK 470 LYS A 341 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 157 CD CD A 404 6444 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 46 56.11 -106.46 REMARK 500 LEU A 47 -82.62 -40.79 REMARK 500 LEU A 50 109.27 -59.98 REMARK 500 LEU A 60 -166.58 -118.43 REMARK 500 GLU A 103 121.89 115.14 REMARK 500 HIS A 212 31.90 -95.62 REMARK 500 SER A 216 -163.25 -108.50 REMARK 500 ASP A 240 102.62 -166.09 REMARK 500 PRO A 249 131.02 -39.81 REMARK 500 GLU A 252 -57.50 56.30 REMARK 500 ILE A 299 39.65 -97.82 REMARK 500 LYS A 341 -78.79 -98.29 REMARK 500 ASP A 354 59.17 39.87 REMARK 500 LYS A 355 -15.99 70.01 REMARK 500 ASP A 364 115.40 -15.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 408 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 2 NE2 REMARK 620 2 ASP A 147 OD1 98.7 REMARK 620 3 ASP A 147 OD2 144.0 52.8 REMARK 620 4 HOH A 540 O 92.9 113.1 81.8 REMARK 620 5 HOH A 541 O 91.6 70.7 97.1 173.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 409 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 3 ND1 REMARK 620 2 GLU A 259 OE1 80.8 REMARK 620 3 HOH A 538 O 119.9 49.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 404 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 99 OE1 REMARK 620 2 GLU A 99 OE2 56.4 REMARK 620 3 GLU A 157 OE1 57.6 113.9 REMARK 620 4 HOH A 531 O 156.3 100.2 145.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 402 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 229 OD2 REMARK 620 2 ASP A 229 OD1 59.3 REMARK 620 3 ASP A 240 OD1 134.7 76.7 REMARK 620 4 GLU A 347 OE1 100.6 108.3 82.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 401 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD2 REMARK 620 2 HIS A 304 NE2 100.7 REMARK 620 3 GLU A 333 OE2 141.6 74.2 REMARK 620 4 GLU A 347 OE2 74.9 112.9 72.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 403 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 366 OE1 REMARK 620 2 HOH A 527 O 139.0 REMARK 620 3 HOH A 528 O 86.7 108.6 REMARK 620 4 HOH A 529 O 93.7 111.2 116.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 405 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 370 O REMARK 620 2 LEU A 370 OXT 51.8 REMARK 620 3 HOH A 544 O 134.2 82.6 REMARK 620 4 HOH A 545 O 85.2 125.4 125.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 411 DBREF 4FKC A 6 369 UNP C6A2N7 C6A2N7_THESM 1 365 SEQADV 4FKC MET A -6 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC ARG A -5 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC GLY A -4 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC SER A -3 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC HIS A -2 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC HIS A -1 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC HIS A 0 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC HIS A 1 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC HIS A 2 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC HIS A 3 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC GLY A 4 UNP C6A2N7 EXPRESSION TAG SEQADV 4FKC SER A 5 UNP C6A2N7 EXPRESSION TAG SEQRES 1 A 377 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 377 ASP TYR LYS ARG ARG ILE HIS LYS PHE GLN ALA HIS PHE SEQRES 3 A 377 GLY LYS LYS GLY PHE GLU GLY ALA LEU VAL ALA PRO GLY SEQRES 4 A 377 SER ASN PHE TYR TYR LEU THR GLY PHE ASN PRO LEU GLY SEQRES 5 A 377 THR LEU GLU ARG LEU PHE VAL LEU ILE LEU PRO SER GLU SEQRES 6 A 377 GLY LEU LEU THR ALA ILE ALA PRO ARG LEU TYR GLU LYS SEQRES 7 A 377 GLU LEU GLU GLU PHE ASN GLY GLU VAL VAL LEU TRP SER SEQRES 8 A 377 ASP SER GLU ASN PRO TYR LYS ILE PHE ALA THR LYS ILE SEQRES 9 A 377 LYS GLU THR PHE LYS GLU GLY GLU LYS LEU LEU ILE ASP SEQRES 10 A 377 ASP THR MET PRO VAL GLY VAL PHE LEU LYS ALA LYS ASP SEQRES 11 A 377 ILE PHE ASP LYS TYR SER LEU HIS PRO ILE SER PRO VAL SEQRES 12 A 377 ILE SER GLU LEU ARG GLU ILE LYS ASP LYS ASP GLU ILE SEQRES 13 A 377 LYS ALA HIS LYS LYS ALA ALA GLU ILE VAL ASP LYS VAL SEQRES 14 A 377 PHE TYR ARG PHE ILE GLU GLY LYS LEU GLU GLY LYS SER SEQRES 15 A 377 GLU ARG GLU LEU ALA ASN ARG ILE GLU TYR MET ILE LYS SEQRES 16 A 377 ASN GLU PHE GLY ALA ASP ASP VAL SER PHE GLU PRO ILE SEQRES 17 A 377 VAL ALA SER GLY PRO ASN GLY ALA ASN PRO HIS HIS ARG SEQRES 18 A 377 PRO SER HIS ARG LYS ILE ARG LYS GLY ASP VAL VAL ILE SEQRES 19 A 377 PHE ASP TYR GLY ALA LYS TYR LEU GLY TYR CYS SER ASP SEQRES 20 A 377 VAL THR ARG THR VAL VAL VAL GLY PRO PRO SER GLU GLU SEQRES 21 A 377 VAL LYS LYS VAL TYR GLU ILE VAL LYS GLU ALA GLN GLU SEQRES 22 A 377 THR ALA VAL GLN LYS VAL ALA GLU GLY ILE PRO ALA GLU SEQRES 23 A 377 VAL VAL ASP ALA THR ALA ARG GLY ILE ILE SER LYS TYR SEQRES 24 A 377 GLY TYR GLY GLU TYR PHE ILE HIS ARG THR GLY HIS GLY SEQRES 25 A 377 LEU GLY ILE ASP VAL HIS GLU GLU PRO TYR ILE SER PRO SEQRES 26 A 377 GLY ASN LYS LYS ILE LEU LYS ASP GLY MET VAL PHE THR SEQRES 27 A 377 ILE GLU PRO GLY ILE TYR LEU GLN GLY LYS PHE GLY VAL SEQRES 28 A 377 ARG ILE GLU ASP ASP VAL ALA LEU VAL ASP LYS LYS GLY SEQRES 29 A 377 ILE ARG LEU THR ASN ALA ASP ARG GLU LEU ILE THR LEU HET CD A 401 1 HET CD A 402 1 HET CD A 403 1 HET CD A 404 1 HET CD A 405 1 HET CD A 406 1 HET CD A 407 1 HET CD A 408 1 HET CD A 409 1 HET CD A 410 1 HET CD A 411 1 HET CD A 412 1 HETNAM CD CADMIUM ION FORMUL 2 CD 12(CD 2+) FORMUL 14 HOH *53(H2 O) HELIX 1 1 ASP A 7 LYS A 22 1 16 HELIX 2 2 GLY A 32 GLY A 40 1 9 HELIX 3 3 TYR A 69 GLU A 74 1 6 HELIX 4 4 ASN A 88 PHE A 101 1 14 HELIX 5 5 PRO A 114 ALA A 121 1 8 HELIX 6 6 ALA A 121 ASP A 126 1 6 HELIX 7 7 ILE A 133 GLU A 142 1 10 HELIX 8 8 ASP A 145 ILE A 167 1 23 HELIX 9 9 SER A 175 ASN A 189 1 15 HELIX 10 10 PRO A 206 ASN A 210 5 5 HELIX 11 11 GLU A 252 VAL A 272 1 21 HELIX 12 12 PRO A 277 TYR A 292 1 16 SHEET 1 A 6 GLU A 79 TRP A 83 0 SHEET 2 A 6 THR A 62 PRO A 66 1 N ALA A 63 O VAL A 81 SHEET 3 A 6 VAL A 52 PRO A 56 -1 N VAL A 52 O ILE A 64 SHEET 4 A 6 GLY A 26 VAL A 29 -1 N ALA A 27 O LEU A 55 SHEET 5 A 6 LYS A 106 ILE A 109 1 O LEU A 108 N LEU A 28 SHEET 6 A 6 SER A 129 PRO A 132 1 O HIS A 131 N ILE A 109 SHEET 1 B 3 ASP A 195 VAL A 196 0 SHEET 2 B 3 ALA A 232 TYR A 234 -1 O LYS A 233 N ASP A 195 SHEET 3 B 3 TYR A 237 CYS A 238 -1 O TYR A 237 N TYR A 234 SHEET 1 C 4 ILE A 201 SER A 204 0 SHEET 2 C 4 VAL A 225 TYR A 230 -1 O ASP A 229 N ILE A 201 SHEET 3 C 4 VAL A 241 VAL A 247 -1 O VAL A 241 N TYR A 230 SHEET 4 C 4 THR A 369 LEU A 370 1 O LEU A 370 N VAL A 246 SHEET 1 D 2 GLY A 303 GLY A 305 0 SHEET 2 D 2 GLU A 312 ILE A 316 -1 O GLU A 312 N GLY A 305 SHEET 1 E 3 VAL A 329 ILE A 332 0 SHEET 2 E 3 ASP A 348 VAL A 353 -1 O VAL A 350 N PHE A 330 SHEET 3 E 3 LYS A 356 ARG A 359 -1 O ILE A 358 N ALA A 351 SHEET 1 F 2 GLY A 335 LEU A 338 0 SHEET 2 F 2 PHE A 342 ARG A 345 -1 O PHE A 342 N LEU A 338 LINK NE2 HIS A 2 CD CD A 408 1555 1555 2.34 LINK ND1 HIS A 3 CD CD A 409 1555 1555 2.32 LINK OE2 GLU A 75 CD CD A 410 1555 1555 2.21 LINK OE1 GLU A 99 CD CD A 404 1555 1555 2.19 LINK OE2 GLU A 99 CD CD A 404 1555 1555 2.21 LINK OD1 ASP A 147 CD CD A 408 1555 1555 2.21 LINK OD2 ASP A 147 CD CD A 408 1555 1555 2.67 LINK OE1 GLU A 157 CD CD A 404 1555 6444 2.71 LINK OE2 GLU A 172 CD CD A 406 1555 1555 2.20 LINK OD2 ASP A 195 CD CD A 407 1555 1555 2.21 LINK OD2 ASP A 229 CD CD A 402 1555 1555 2.20 LINK OD1 ASP A 229 CD CD A 402 1555 1555 2.20 LINK OD2 ASP A 240 CD CD A 401 1555 1555 2.22 LINK OD1 ASP A 240 CD CD A 402 1555 1555 2.19 LINK OE1 GLU A 259 CD CD A 409 1555 6444 2.11 LINK NE2 HIS A 304 CD CD A 401 1555 1555 2.31 LINK OE2 GLU A 333 CD CD A 401 1555 1555 2.22 LINK OE2 GLU A 347 CD CD A 401 1555 1555 2.21 LINK OE1 GLU A 347 CD CD A 402 1555 1555 2.20 LINK OE1 GLU A 366 CD CD A 403 1555 1555 2.21 LINK O LEU A 370 CD CD A 405 1555 1555 2.19 LINK OXT LEU A 370 CD CD A 405 1555 1555 2.60 LINK CD CD A 403 O HOH A 527 1555 1555 2.41 LINK CD CD A 403 O HOH A 528 1555 1555 2.49 LINK CD CD A 403 O HOH A 529 1555 1555 2.64 LINK CD CD A 404 O HOH A 531 1555 1555 2.43 LINK CD CD A 405 O HOH A 544 1555 1555 2.26 LINK CD CD A 405 O HOH A 545 1555 1555 2.38 LINK CD CD A 408 O HOH A 540 1555 1555 1.86 LINK CD CD A 408 O HOH A 541 1555 1555 2.09 LINK CD CD A 409 O HOH A 538 1555 1555 2.40 CISPEP 1 GLU A 313 PRO A 314 0 10.66 SITE 1 AC1 7 ASP A 240 HIS A 304 GLU A 333 GLU A 347 SITE 2 AC1 7 CD A 402 HOH A 549 HOH A 551 SITE 1 AC2 6 ASP A 229 ASP A 240 THR A 242 GLU A 347 SITE 2 AC2 6 CD A 401 HOH A 549 SITE 1 AC3 4 GLU A 366 HOH A 527 HOH A 528 HOH A 529 SITE 1 AC4 4 GLU A 99 GLU A 157 HOH A 530 HOH A 531 SITE 1 AC5 4 LEU A 370 CD A 406 HOH A 544 HOH A 545 SITE 1 AC6 2 GLU A 172 CD A 405 SITE 1 AC7 1 ASP A 195 SITE 1 AC8 4 HIS A 2 ASP A 147 HOH A 540 HOH A 541 SITE 1 AC9 4 HIS A 3 GLU A 259 HOH A 538 HOH A 539 SITE 1 BC1 1 GLU A 75 SITE 1 BC2 1 ASP A 7 CRYST1 89.700 89.700 165.220 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011148 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006053 0.00000