PDB Short entry for 4FUC HEADER HYDROLASE/HYDROLASE INHIBITOR 28-JUN-12 4FUC TITLE CRYSTAL STRUCTURE OF THE UROKINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROKINASE-TYPE PLASMINOGEN ACTIVATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: U-PLASMINOGEN ACTIVATOR, UPA, UROKINASE-TYPE PLASMINOGEN COMPND 5 ACTIVATOR LONG CHAIN A, UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT COMPND 6 CHAIN A, UROKINASE-TYPE PLASMINOGEN ACTIVATOR CHAIN B; COMPND 7 EC: 3.4.21.73; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLAU; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.N.KANG,J.A.STUCKEY,V.NIENABER,V.GIRANDA REVDAT 2 15-NOV-17 4FUC 1 REMARK REVDAT 1 22-AUG-12 4FUC 0 JRNL AUTH Y.N.KANG,J.A.STUCKEY,V.NIENABER,V.GIRANDA JRNL TITL CRYSTAL STRUCTURE OF THE UROKINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 25035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1246 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.71 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2786 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1644 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2633 REMARK 3 BIN R VALUE (WORKING SET) : 0.1606 REMARK 3 BIN FREE R VALUE : 0.2274 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83900 REMARK 3 B22 (A**2) : 1.69470 REMARK 3 B33 (A**2) : -0.85570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.131 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.149 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4296 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7740 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 964 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 48 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 697 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4296 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 5 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 282 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4746 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|1 - 13} REMARK 3 ORIGIN FOR THE GROUP (A): -20.6932 -10.0190 -0.4164 REMARK 3 T TENSOR REMARK 3 T11: 0.0008 T22: 0.0063 REMARK 3 T33: -0.0196 T12: 0.0064 REMARK 3 T13: -0.0215 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.4643 L22: 0.1581 REMARK 3 L33: 0.4296 L12: 0.1311 REMARK 3 L13: -0.3441 L23: 0.9306 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: 0.0214 S13: -0.0314 REMARK 3 S21: -0.0670 S22: -0.0084 S23: 0.0061 REMARK 3 S31: 0.0176 S32: -0.0305 S33: 0.0152 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|14 - 28} REMARK 3 ORIGIN FOR THE GROUP (A): -5.0268 1.5951 5.4784 REMARK 3 T TENSOR REMARK 3 T11: -0.0250 T22: 0.0009 REMARK 3 T33: -0.0069 T12: -0.0148 REMARK 3 T13: 0.0106 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.8537 L22: 1.1521 REMARK 3 L33: 1.0492 L12: -0.0930 REMARK 3 L13: -0.8931 L23: -0.2063 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0027 S13: 0.0558 REMARK 3 S21: -0.1164 S22: 0.0279 S23: -0.1579 REMARK 3 S31: -0.0594 S32: 0.1071 S33: -0.0240 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|29 - 70} REMARK 3 ORIGIN FOR THE GROUP (A): -10.0074 -0.5961 9.5964 REMARK 3 T TENSOR REMARK 3 T11: -0.0195 T22: -0.0174 REMARK 3 T33: -0.0209 T12: -0.0041 REMARK 3 T13: -0.0029 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.5398 L22: 0.6091 REMARK 3 L33: 0.3968 L12: 0.0887 REMARK 3 L13: 0.1056 L23: 0.2888 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.0091 S13: 0.0401 REMARK 3 S21: -0.0035 S22: 0.0005 S23: -0.0447 REMARK 3 S31: -0.0858 S32: 0.0451 S33: 0.0175 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|71 - 104} REMARK 3 ORIGIN FOR THE GROUP (A): -9.0504 -2.6528 16.9352 REMARK 3 T TENSOR REMARK 3 T11: -0.0251 T22: -0.0114 REMARK 3 T33: -0.0188 T12: -0.0060 REMARK 3 T13: -0.0045 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.4020 L22: 1.1614 REMARK 3 L33: 0.5286 L12: -0.1591 REMARK 3 L13: -0.0048 L23: 0.4027 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: -0.0083 S13: 0.0516 REMARK 3 S21: 0.1860 S22: 0.0060 S23: -0.0343 REMARK 3 S31: -0.0642 S32: 0.0356 S33: 0.0242 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|105 - 115} REMARK 3 ORIGIN FOR THE GROUP (A): -20.6426 10.0618 9.9227 REMARK 3 T TENSOR REMARK 3 T11: 0.0108 T22: 0.0112 REMARK 3 T33: 0.0723 T12: 0.0152 REMARK 3 T13: -0.0060 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.0382 L22: 0.3877 REMARK 3 L33: 0.3378 L12: 0.8141 REMARK 3 L13: 0.6851 L23: 0.0390 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: 0.1056 S13: 0.0826 REMARK 3 S21: -0.0417 S22: 0.0178 S23: -0.0089 REMARK 3 S31: -0.1095 S32: -0.0965 S33: -0.0381 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|116 - 130} REMARK 3 ORIGIN FOR THE GROUP (A): -24.8412 -10.0290 17.2454 REMARK 3 T TENSOR REMARK 3 T11: -0.0234 T22: 0.0123 REMARK 3 T33: -0.0150 T12: -0.0231 REMARK 3 T13: 0.0070 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.6484 L22: 0.5718 REMARK 3 L33: 0.6276 L12: 0.4803 REMARK 3 L13: -0.4401 L23: -0.1014 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: -0.1070 S13: -0.0114 REMARK 3 S21: 0.0041 S22: -0.0649 S23: 0.0721 REMARK 3 S31: 0.0518 S32: -0.1443 S33: 0.0675 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|131 - 159} REMARK 3 ORIGIN FOR THE GROUP (A): -14.1555 -14.0950 0.8740 REMARK 3 T TENSOR REMARK 3 T11: -0.0127 T22: -0.0049 REMARK 3 T33: -0.0252 T12: 0.0059 REMARK 3 T13: -0.0015 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.9930 L22: 0.6266 REMARK 3 L33: 0.8307 L12: 0.2214 REMARK 3 L13: -0.4189 L23: 0.0419 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.0099 S13: -0.0385 REMARK 3 S21: -0.0430 S22: -0.0245 S23: -0.0168 REMARK 3 S31: -0.0061 S32: 0.0477 S33: -0.0039 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|160 - 166} REMARK 3 ORIGIN FOR THE GROUP (A): -18.0994 -29.6402 15.7346 REMARK 3 T TENSOR REMARK 3 T11: 0.0005 T22: 0.0148 REMARK 3 T33: 0.0105 T12: -0.0003 REMARK 3 T13: -0.0190 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.0013 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.6242 REMARK 3 L13: 0.3140 L23: -0.1335 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.0366 S13: -0.0224 REMARK 3 S21: 0.0486 S22: -0.0103 S23: 0.0693 REMARK 3 S31: 0.0116 S32: -0.0054 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|167 - 246} REMARK 3 ORIGIN FOR THE GROUP (A): -14.1743 -19.2020 14.5435 REMARK 3 T TENSOR REMARK 3 T11: -0.0327 T22: -0.0040 REMARK 3 T33: -0.0217 T12: -0.0069 REMARK 3 T13: -0.0017 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.3358 L22: 0.9740 REMARK 3 L33: 0.5596 L12: -0.0516 REMARK 3 L13: -0.0141 L23: 0.0111 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0495 S13: -0.0707 REMARK 3 S21: 0.0522 S22: -0.0101 S23: 0.0064 REMARK 3 S31: 0.0589 S32: -0.0216 S33: 0.0095 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FUC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 160 REMARK 200 PH : 4.8-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30391 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M LI2SO4, 20% POLYETHYLENE GLYCOL REMARK 280 MW 4000 IN SUCCINATE BUFFER, PH 4.8-6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H3 ILE A 1 O HOH A 406 1.43 REMARK 500 H2 ILE A 1 O LYS A 142 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 30 -67.22 -107.32 REMARK 500 SER A 43 -158.93 -150.91 REMARK 500 PRO A 52 36.03 -84.56 REMARK 500 TYR A 172 -114.11 -91.25 REMARK 500 SER A 217 -61.64 -122.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 239 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 315 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FU7 RELATED DB: PDB REMARK 900 RELATED ID: 4FU8 RELATED DB: PDB REMARK 900 RELATED ID: 4FU9 RELATED DB: PDB REMARK 900 RELATED ID: 4FUB RELATED DB: PDB REMARK 900 RELATED ID: 4FUD RELATED DB: PDB REMARK 900 RELATED ID: 4FUE RELATED DB: PDB REMARK 900 RELATED ID: 4FUF RELATED DB: PDB REMARK 900 RELATED ID: 4FUG RELATED DB: PDB REMARK 900 RELATED ID: 4FUH RELATED DB: PDB REMARK 900 RELATED ID: 4FUI RELATED DB: PDB REMARK 900 RELATED ID: 4FUJ RELATED DB: PDB DBREF 4FUC A 1 246 UNP P00749 UROK_HUMAN 179 424 SEQADV 4FUC ALA A 121 UNP P00749 CYS 299 ENGINEERED MUTATION SEQADV 4FUC GLN A 144 UNP P00749 ASN 322 ENGINEERED MUTATION SEQRES 1 A 246 ILE ILE GLY GLY GLU PHE THR THR ILE GLU ASN GLN PRO SEQRES 2 A 246 TRP PHE ALA ALA ILE TYR ARG ARG HIS ARG GLY GLY SER SEQRES 3 A 246 VAL THR TYR VAL CYS GLY GLY SER LEU ILE SER PRO CYS SEQRES 4 A 246 TRP VAL ILE SER ALA THR HIS CYS PHE ILE ASP TYR PRO SEQRES 5 A 246 LYS LYS GLU ASP TYR ILE VAL TYR LEU GLY ARG SER ARG SEQRES 6 A 246 LEU ASN SER ASN THR GLN GLY GLU MET LYS PHE GLU VAL SEQRES 7 A 246 GLU ASN LEU ILE LEU HIS LYS ASP TYR SER ALA ASP THR SEQRES 8 A 246 LEU ALA HIS HIS ASN ASP ILE ALA LEU LEU LYS ILE ARG SEQRES 9 A 246 SER LYS GLU GLY ARG CYS ALA GLN PRO SER ARG THR ILE SEQRES 10 A 246 GLN THR ILE ALA LEU PRO SER MET TYR ASN ASP PRO GLN SEQRES 11 A 246 PHE GLY THR SER CYS GLU ILE THR GLY PHE GLY LYS GLU SEQRES 12 A 246 GLN SER THR ASP TYR LEU TYR PRO GLU GLN LEU LYS MET SEQRES 13 A 246 THR VAL VAL LYS LEU ILE SER HIS ARG GLU CYS GLN GLN SEQRES 14 A 246 PRO HIS TYR TYR GLY SER GLU VAL THR THR LYS MET LEU SEQRES 15 A 246 CYS ALA ALA ASP PRO GLN TRP LYS THR ASP SER CYS GLN SEQRES 16 A 246 GLY ASP SER GLY GLY PRO LEU VAL CYS SER LEU GLN GLY SEQRES 17 A 246 ARG MET THR LEU THR GLY ILE VAL SER TRP GLY ARG GLY SEQRES 18 A 246 CYS ALA LEU LYS ASP LYS PRO GLY VAL TYR THR ARG VAL SEQRES 19 A 246 SER HIS PHE LEU PRO TRP ILE ARG SER HIS THR LYS HET 239 A 301 42 HET SIN A 302 16 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET ACT A 307 4 HET GOL A 308 6 HET GOL A 309 6 HET GOL A 310 6 HET GOL A 311 6 HET GOL A 312 6 HET GOL A 313 6 HET GOL A 314 6 HET GOL A 315 6 HETNAM 239 6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-2- HETNAM 2 239 NAPHTHAMIDE HETNAM SIN SUCCINIC ACID HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN 239 6-[N-(4-(AMINOMETHYL)PHENYL)CARBAMYL]-2- HETSYN 2 239 NAPHTHALENECARBOXAMIDINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 239 C19 H18 N4 O FORMUL 3 SIN C4 H6 O4 FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 GOL 8(C3 H8 O3) FORMUL 17 HOH *366(H2 O) HELIX 1 1 THR A 8 GLN A 12 5 5 HELIX 2 2 ALA A 44 PHE A 48 5 5 HELIX 3 3 LYS A 53 GLU A 55 5 3 HELIX 4 4 SER A 163 GLN A 168 1 6 HELIX 5 5 TYR A 173 VAL A 177 5 5 HELIX 6 6 PHE A 237 LYS A 246 1 10 SHEET 1 A 8 GLU A 5 PHE A 6 0 SHEET 2 A 8 LYS A 155 ILE A 162 -1 O MET A 156 N GLU A 5 SHEET 3 A 8 MET A 181 ALA A 185 -1 O CYS A 183 N ILE A 162 SHEET 4 A 8 GLY A 229 ARG A 233 -1 O TYR A 231 N LEU A 182 SHEET 5 A 8 ARG A 209 TRP A 218 -1 N TRP A 218 O VAL A 230 SHEET 6 A 8 PRO A 201 LEU A 206 -1 N LEU A 202 O GLY A 214 SHEET 7 A 8 SER A 134 GLY A 139 -1 N GLU A 136 O VAL A 203 SHEET 8 A 8 LYS A 155 ILE A 162 -1 O VAL A 159 N CYS A 135 SHEET 1 B 7 PHE A 15 ARG A 21 0 SHEET 2 B 7 VAL A 27 SER A 37 -1 O VAL A 30 N ILE A 18 SHEET 3 B 7 TRP A 40 SER A 43 -1 O ILE A 42 N SER A 34 SHEET 4 B 7 ALA A 99 ARG A 104 -1 O LEU A 101 N VAL A 41 SHEET 5 B 7 MET A 74 LEU A 83 -1 N ILE A 82 O LEU A 100 SHEET 6 B 7 TYR A 57 LEU A 61 -1 N VAL A 59 O PHE A 76 SHEET 7 B 7 PHE A 15 ARG A 21 -1 N TYR A 19 O ILE A 58 SHEET 1 C 2 SER A 88 ALA A 89 0 SHEET 2 C 2 HIS A 94 HIS A 95 -1 O HIS A 95 N SER A 88 SSBOND 1 CYS A 31 CYS A 47 1555 1555 2.04 SSBOND 2 CYS A 39 CYS A 110 1555 1555 2.04 SSBOND 3 CYS A 135 CYS A 204 1555 1555 2.05 SSBOND 4 CYS A 167 CYS A 183 1555 1555 2.02 SSBOND 5 CYS A 194 CYS A 222 1555 1555 2.05 SITE 1 AC1 12 HIS A 46 ASP A 50 HIS A 94 ASP A 192 SITE 2 AC1 12 SER A 193 GLN A 195 SER A 198 TRP A 218 SITE 3 AC1 12 GLY A 221 GLY A 229 SIN A 302 HOH A 427 SITE 1 AC2 10 VAL A 30 CYS A 31 HIS A 46 CYS A 47 SITE 2 AC2 10 GLN A 195 GLY A 196 SER A 198 239 A 301 SITE 3 AC2 10 HOH A 706 HOH A 712 SITE 1 AC3 6 LYS A 180 HIS A 236 HOH A 494 HOH A 641 SITE 2 AC3 6 HOH A 723 HOH A 751 SITE 1 AC4 9 ARG A 23 LYS A 53 HIS A 95 THR A 178 SITE 2 AC4 9 LYS A 180 MET A 181 HOH A 420 HOH A 501 SITE 3 AC4 9 HOH A 709 SITE 1 AC5 6 TYR A 126 ARG A 233 HIS A 236 HOH A 505 SITE 2 AC5 6 HOH A 506 HOH A 507 SITE 1 AC6 4 ARG A 21 ARG A 23 GLY A 24 HOH A 765 SITE 1 AC7 7 THR A 178 THR A 179 HOH A 501 HOH A 502 SITE 2 AC7 7 HOH A 538 HOH A 657 HOH A 709 SITE 1 AC8 7 THR A 28 TYR A 29 TYR A 150 GOL A 311 SITE 2 AC8 7 HOH A 414 HOH A 438 HOH A 580 SITE 1 AC9 8 PRO A 52 LEU A 81 ASP A 90 THR A 91 SITE 2 AC9 8 GLU A 176 HOH A 482 HOH A 492 HOH A 508 SITE 1 BC1 5 ARG A 20 HIS A 22 ARG A 23 TYR A 51 SITE 2 BC1 5 HOH A 573 SITE 1 BC2 7 THR A 28 TYR A 29 ASN A 67 GOL A 308 SITE 2 BC2 7 GOL A 314 HOH A 583 HOH A 747 SITE 1 BC3 9 SER A 37 PRO A 38 CYS A 39 TRP A 40 SITE 2 BC3 9 LEU A 206 GLN A 207 HOH A 512 HOH A 607 SITE 3 BC3 9 HOH A 752 SITE 1 BC4 7 GLU A 5 ASN A 11 LYS A 142 MET A 156 SITE 2 BC4 7 GLN A 195 HOH A 535 HOH A 566 SITE 1 BC5 7 VAL A 27 TYR A 60 ARG A 63 ASN A 67 SITE 2 BC5 7 GOL A 311 HOH A 651 HOH A 652 SITE 1 BC6 6 LYS A 75 LYS A 106 LYS A 225 HOH A 490 SITE 2 BC6 6 HOH A 591 HOH A 594 CRYST1 54.700 53.400 80.250 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012461 0.00000