PDB Short entry for 4G0N HEADER PROTEIN BINDING/TRANSFERASE 09-JUL-12 4G0N TITLE CRYSTAL STRUCTURE OF WT H-RAS-GPPNHP BOUND TO THE RBD OF RAF KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-166; COMPND 5 SYNONYM: H-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS, COMPND 6 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 54-131; COMPND 12 SYNONYM: PROTO-ONCOGENE C-RAF, CRAF, RAF-1; COMPND 13 EC: 2.7.11.1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: RAF1, RAF; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET302/NT-HIS KEYWDS H-RAS, RAS, RAF KINASE, RAF, GTPASE, ALLOSTERIC REGULATION, INTRINSIC KEYWDS 2 HYDROLYSIS, PROTEIN-PROTEIN INTERACTION, RAS/RAF/MEK/ERK, KINASE, KEYWDS 3 GTP BINDING, PROTEIN BINDING-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.K.FETICS,B.M.KEARNEY,G.BUHRMAN,C.MATTOS REVDAT 3 28-FEB-24 4G0N 1 REMARK LINK REVDAT 2 11-MAR-15 4G0N 1 JRNL REVDAT 1 17-JUL-13 4G0N 0 JRNL AUTH S.K.FETICS,H.GUTERRES,B.M.KEARNEY,G.BUHRMAN,B.MA,R.NUSSINOV, JRNL AUTH 2 C.MATTOS JRNL TITL ALLOSTERIC EFFECTS OF THE ONCOGENIC RASQ61L MUTANT ON JRNL TITL 2 RAF-RBD. JRNL REF STRUCTURE V. 23 505 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25684575 JRNL DOI 10.1016/J.STR.2014.12.017 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 16133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3708 - 5.5908 1.00 1333 154 0.1929 0.2179 REMARK 3 2 5.5908 - 4.4413 1.00 1279 138 0.1568 0.2138 REMARK 3 3 4.4413 - 3.8809 1.00 1255 140 0.1452 0.1776 REMARK 3 4 3.8809 - 3.5266 1.00 1244 139 0.1563 0.2208 REMARK 3 5 3.5266 - 3.2740 0.99 1234 136 0.1720 0.2133 REMARK 3 6 3.2740 - 3.0812 1.00 1223 137 0.1875 0.2610 REMARK 3 7 3.0812 - 2.9270 1.00 1238 139 0.1923 0.2780 REMARK 3 8 2.9270 - 2.7996 0.99 1212 137 0.2074 0.2585 REMARK 3 9 2.7996 - 2.6919 0.99 1225 136 0.2275 0.2771 REMARK 3 10 2.6919 - 2.5991 0.98 1194 135 0.2416 0.3150 REMARK 3 11 2.5991 - 2.5178 0.92 1138 125 0.2444 0.2859 REMARK 3 12 2.5178 - 2.4459 0.77 930 112 0.2724 0.2884 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.17030 REMARK 3 B22 (A**2) : 7.17030 REMARK 3 B33 (A**2) : -14.34060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1956 REMARK 3 ANGLE : 0.680 2662 REMARK 3 CHIRALITY : 0.040 305 REMARK 3 PLANARITY : 0.003 335 REMARK 3 DIHEDRAL : 14.171 711 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7956 0.1928 -16.3778 REMARK 3 T TENSOR REMARK 3 T11: 0.3970 T22: 0.3040 REMARK 3 T33: 0.3218 T12: 0.0934 REMARK 3 T13: -0.0086 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 0.9234 L22: 2.5696 REMARK 3 L33: 2.2589 L12: -1.0697 REMARK 3 L13: -0.1429 L23: 0.9771 REMARK 3 S TENSOR REMARK 3 S11: 0.1322 S12: 0.2547 S13: 0.2298 REMARK 3 S21: -0.6232 S22: -0.1982 S23: 0.0351 REMARK 3 S31: -0.4634 S32: -0.2926 S33: 0.0735 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9844 -5.7599 -23.9836 REMARK 3 T TENSOR REMARK 3 T11: 0.7492 T22: 0.7568 REMARK 3 T33: 0.4759 T12: 0.2684 REMARK 3 T13: 0.2087 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 3.4808 L22: 2.0424 REMARK 3 L33: 0.9376 L12: 0.8697 REMARK 3 L13: -0.2575 L23: 0.5023 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: 1.2138 S13: -0.3911 REMARK 3 S21: -1.1644 S22: 0.2260 S23: -1.1516 REMARK 3 S31: -0.0943 S32: 0.8422 S33: -0.1308 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7901 -8.3891 -8.1924 REMARK 3 T TENSOR REMARK 3 T11: 0.2360 T22: 0.2162 REMARK 3 T33: 0.2827 T12: -0.0079 REMARK 3 T13: 0.0478 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.9213 L22: 3.5016 REMARK 3 L33: 2.0949 L12: -0.5191 REMARK 3 L13: -0.3272 L23: 0.5335 REMARK 3 S TENSOR REMARK 3 S11: 0.1666 S12: 0.0395 S13: 0.1641 REMARK 3 S21: -0.1080 S22: -0.0550 S23: -0.3898 REMARK 3 S31: -0.1722 S32: 0.2145 S33: -0.0668 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8981 -0.1013 -31.7044 REMARK 3 T TENSOR REMARK 3 T11: 0.7709 T22: 0.5302 REMARK 3 T33: 0.3419 T12: 0.2019 REMARK 3 T13: -0.0045 T23: 0.1137 REMARK 3 L TENSOR REMARK 3 L11: 3.2140 L22: 4.6477 REMARK 3 L33: 4.7943 L12: 1.0263 REMARK 3 L13: 0.3337 L23: 2.0383 REMARK 3 S TENSOR REMARK 3 S11: -0.1221 S12: -0.0255 S13: -0.0735 REMARK 3 S21: 0.1049 S22: 0.3614 S23: -0.4437 REMARK 3 S31: 0.2494 S32: 0.0500 S33: -0.1350 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3695 -9.7170 -37.3794 REMARK 3 T TENSOR REMARK 3 T11: 0.9538 T22: 1.1211 REMARK 3 T33: 0.5980 T12: -0.1001 REMARK 3 T13: -0.0589 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 6.1090 L22: 2.5402 REMARK 3 L33: 0.1222 L12: -0.7345 REMARK 3 L13: 0.5411 L23: 0.3607 REMARK 3 S TENSOR REMARK 3 S11: -0.3261 S12: -0.8296 S13: -0.9536 REMARK 3 S21: 0.6076 S22: 0.1497 S23: 0.1702 REMARK 3 S31: 0.5729 S32: 0.0242 S33: -0.1288 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5713 -0.9302 -28.9974 REMARK 3 T TENSOR REMARK 3 T11: 0.7658 T22: 0.8566 REMARK 3 T33: 0.4139 T12: 0.2638 REMARK 3 T13: -0.0861 T23: 0.1589 REMARK 3 L TENSOR REMARK 3 L11: 1.2207 L22: 1.2210 REMARK 3 L33: 3.6684 L12: -0.2321 REMARK 3 L13: -0.4895 L23: -0.8069 REMARK 3 S TENSOR REMARK 3 S11: -0.3260 S12: 0.1682 S13: 0.0599 REMARK 3 S21: -0.5516 S22: 0.0688 S23: 0.4603 REMARK 3 S31: 0.1520 S32: -1.2648 S33: -0.1289 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4079 7.8645 -37.6765 REMARK 3 T TENSOR REMARK 3 T11: 0.9664 T22: 0.7230 REMARK 3 T33: 0.3330 T12: 0.3934 REMARK 3 T13: -0.0540 T23: 0.0802 REMARK 3 L TENSOR REMARK 3 L11: 1.4201 L22: 1.3922 REMARK 3 L33: 4.0042 L12: -0.0514 REMARK 3 L13: 0.4480 L23: 1.6322 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: -0.0767 S13: 0.5309 REMARK 3 S21: -0.4609 S22: -0.0161 S23: 0.1662 REMARK 3 S31: -1.2581 S32: -0.1085 S33: 0.0806 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1504 4.1186 -39.1303 REMARK 3 T TENSOR REMARK 3 T11: 0.9037 T22: 0.8030 REMARK 3 T33: 0.4423 T12: 0.2372 REMARK 3 T13: -0.1525 T23: 0.1539 REMARK 3 L TENSOR REMARK 3 L11: 3.9756 L22: 2.7113 REMARK 3 L33: 1.6414 L12: -1.1067 REMARK 3 L13: -1.5633 L23: 0.7477 REMARK 3 S TENSOR REMARK 3 S11: -0.2562 S12: 0.3713 S13: 0.5799 REMARK 3 S21: 0.0968 S22: 0.4346 S23: 0.1735 REMARK 3 S31: 0.0001 S32: -1.2304 S33: -0.1396 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16218 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 32.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 10 - 16 MG/ML, 50 MM REMARK 280 HEPES, PH 7.2, 50 MM NACL, 10MM MGCL2 5% GLYCEROL, 1MM DTE, 10 M REMARK 280 ZNCL2 RESERVOIR SOLUTION:200MM CALCIUM ACETATE, 100MM SODIUM REMARK 280 CACODYLATE PH 6.5, 18% PEG 8000. DROP: 1UL PROTEIN, 1UL REMARK 280 RESERVOIR, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K, PH REMARK 280 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 363 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 208 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 MET A 67 CG SD CE REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 74 CG OD1 ND2 REMARK 470 GLN B 92 CG CD OE1 NE2 REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 HIS B 105 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 62 -149.63 51.52 REMARK 500 ALA A 122 45.68 -83.76 REMARK 500 ASN B 56 73.75 -106.89 REMARK 500 GLU B 94 47.66 -80.18 REMARK 500 CYS B 95 1.89 -155.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 84.5 REMARK 620 3 GNP A 201 O2G 174.7 90.2 REMARK 620 4 GNP A 201 O2B 93.3 177.1 92.0 REMARK 620 5 HOH A 335 O 92.6 89.9 87.4 88.3 REMARK 620 6 HOH A 344 O 86.5 98.7 94.3 83.0 171.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 O REMARK 620 2 TYR A 137 O 151.0 REMARK 620 3 ACT A 205 O 73.6 133.7 REMARK 620 4 ACT A 205 OXT 98.1 94.5 53.3 REMARK 620 5 HOH A 345 O 110.6 92.2 67.3 101.0 REMARK 620 6 HOH A 346 O 86.1 75.3 142.0 164.1 91.7 REMARK 620 7 HOH A 347 O 83.9 70.3 131.3 89.4 160.4 75.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 332 O REMARK 620 2 HOH A 333 O 76.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTU A 206 DBREF 4G0N A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 4G0N B 54 131 UNP P04049 RAF1_HUMAN 54 131 SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 78 THR SER ASN THR ILE ARG VAL PHE LEU PRO ASN LYS GLN SEQRES 2 B 78 ARG THR VAL VAL ASN VAL ARG ASN GLY MET SER LEU HIS SEQRES 3 B 78 ASP CYS LEU MET LYS ALA LEU LYS VAL ARG GLY LEU GLN SEQRES 4 B 78 PRO GLU CYS CYS ALA VAL PHE ARG LEU LEU HIS GLU HIS SEQRES 5 B 78 LYS GLY LYS LYS ALA ARG LEU ASP TRP ASN THR ASP ALA SEQRES 6 B 78 ALA SER LEU ILE GLY GLU GLU LEU GLN VAL ASP PHE LEU HET GNP A 201 32 HET CA A 202 1 HET MG A 203 1 HET CA A 204 1 HET ACT A 205 4 HET DTU A 206 8 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 CA 2(CA 2+) FORMUL 5 MG MG 2+ FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 DTU C4 H10 O2 S2 FORMUL 9 HOH *82(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 MET A 67 GLY A 75 1 9 HELIX 3 3 ASN A 86 ASP A 105 1 20 HELIX 4 4 GLU A 126 GLY A 138 1 13 HELIX 5 5 GLY A 151 HIS A 166 1 16 HELIX 6 6 SER B 77 VAL B 88 1 12 HELIX 7 7 GLN B 92 GLU B 94 5 3 HELIX 8 8 ASP B 117 ILE B 122 5 6 SHEET 1 A 6 ASP A 38 ILE A 46 0 SHEET 2 A 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 A 6 THR A 2 VAL A 9 1 N LEU A 6 O LEU A 56 SHEET 4 A 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 B 5 GLN B 66 ASN B 71 0 SHEET 2 B 5 THR B 57 LEU B 62 -1 N VAL B 60 O THR B 68 SHEET 3 B 5 GLU B 125 PHE B 130 1 O LEU B 126 N ARG B 59 SHEET 4 B 5 CYS B 96 LEU B 101 -1 N PHE B 99 O GLN B 127 SHEET 5 B 5 LYS B 109 ARG B 111 -1 O ALA B 110 N ARG B 100 LINK OG SER A 17 MG MG A 203 1555 1555 2.04 LINK OG1 THR A 35 MG MG A 203 1555 1555 1.99 LINK O ASP A 107 CA CA A 202 1555 1555 2.39 LINK O TYR A 137 CA CA A 202 1555 1555 2.36 LINK O2G GNP A 201 MG MG A 203 1555 1555 1.89 LINK O2B GNP A 201 MG MG A 203 1555 1555 2.00 LINK CA CA A 202 O ACT A 205 1555 1555 2.21 LINK CA CA A 202 OXT ACT A 205 1555 1555 2.47 LINK CA CA A 202 O HOH A 345 1555 1555 2.37 LINK CA CA A 202 O HOH A 346 1555 1555 2.43 LINK CA CA A 202 O HOH A 347 1555 1555 2.94 LINK MG MG A 203 O HOH A 335 1555 1555 2.05 LINK MG MG A 203 O HOH A 344 1555 1555 2.06 LINK CA CA A 204 O HOH A 332 1555 1555 2.44 LINK CA CA A 204 O HOH A 333 1555 1555 2.54 SITE 1 AC1 28 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 28 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 28 VAL A 29 ASP A 30 GLU A 31 PRO A 34 SITE 4 AC1 28 THR A 35 GLY A 60 ASN A 116 LYS A 117 SITE 5 AC1 28 ASP A 119 LEU A 120 SER A 145 ALA A 146 SITE 6 AC1 28 LYS A 147 MG A 203 HOH A 301 HOH A 317 SITE 7 AC1 28 HOH A 335 HOH A 344 HOH A 364 HOH A 365 SITE 1 AC2 6 ASP A 107 TYR A 137 ACT A 205 HOH A 345 SITE 2 AC2 6 HOH A 346 HOH A 347 SITE 1 AC3 6 SER A 17 THR A 35 ASP A 57 GNP A 201 SITE 2 AC3 6 HOH A 335 HOH A 344 SITE 1 AC4 2 HOH A 332 HOH A 333 SITE 1 AC5 8 ARG A 97 ASP A 107 ASP A 108 VAL A 109 SITE 2 AC5 8 MET A 111 TYR A 137 CA A 202 HOH A 345 SITE 1 AC6 5 ARG A 68 ASP A 92 GLN A 95 TYR A 96 SITE 2 AC6 5 GLN A 99 CRYST1 90.440 90.440 92.703 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011057 0.006384 0.000000 0.00000 SCALE2 0.000000 0.012768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010787 0.00000