PDB Short entry for 4G6H HEADER OXIDOREDUCTASE 19-JUL-12 4G6H TITLE CRYSTAL STRUCTURE OF NDH WITH NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROTENONE-INSENSITIVE NADH-UBIQUINONE OXIDOREDUCTASE, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: INTERNAL NADH DEHYDROGENASE; COMPND 6 EC: 1.6.5.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: NDI1, YML120C, YM7056.06C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, ELECTRON TRANSFER, FAD, NADH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.LI,Y.FENG,J.GE,M.YANG REVDAT 3 06-NOV-13 4G6H 1 HET HETATM HETNAM HETSYN REVDAT 2 05-DEC-12 4G6H 1 JRNL REVDAT 1 24-OCT-12 4G6H 0 JRNL AUTH Y.FENG,W.LI,J.LI,J.WANG,J.GE,D.XU,Y.LIU,K.WU,Q.ZENG,J.W.WU, JRNL AUTH 2 C.TIAN,B.ZHOU,M.YANG JRNL TITL STRUCTURAL INSIGHT INTO THE TYPE-II MITOCHONDRIAL NADH JRNL TITL 2 DEHYDROGENASES. JRNL REF NATURE V. 491 478 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 23086143 JRNL DOI 10.1038/NATURE11541 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 55454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1574 - 6.7778 0.98 2800 142 0.2064 0.2247 REMARK 3 2 6.7778 - 5.3831 0.99 2696 156 0.2124 0.2278 REMARK 3 3 5.3831 - 4.7035 0.99 2681 158 0.1571 0.1844 REMARK 3 4 4.7035 - 4.2739 1.00 2693 146 0.1408 0.1606 REMARK 3 5 4.2739 - 3.9678 1.00 2654 166 0.1458 0.1911 REMARK 3 6 3.9678 - 3.7340 1.00 2683 121 0.1569 0.2089 REMARK 3 7 3.7340 - 3.5471 1.00 2680 147 0.1597 0.1999 REMARK 3 8 3.5471 - 3.3928 1.00 2692 135 0.1751 0.2104 REMARK 3 9 3.3928 - 3.2622 1.00 2656 147 0.1829 0.2139 REMARK 3 10 3.2622 - 3.1497 1.00 2680 135 0.1962 0.1957 REMARK 3 11 3.1497 - 3.0512 1.00 2643 154 0.1995 0.2148 REMARK 3 12 3.0512 - 2.9640 1.00 2679 118 0.1947 0.2132 REMARK 3 13 2.9640 - 2.8860 1.00 2649 143 0.2042 0.2587 REMARK 3 14 2.8860 - 2.8156 1.00 2654 133 0.2102 0.2539 REMARK 3 15 2.8156 - 2.7516 1.00 2652 170 0.2116 0.2518 REMARK 3 16 2.7516 - 2.6931 1.00 2645 122 0.2053 0.2585 REMARK 3 17 2.6931 - 2.6392 1.00 2676 115 0.2139 0.2309 REMARK 3 18 2.6392 - 2.5894 1.00 2656 140 0.2121 0.2560 REMARK 3 19 2.5894 - 2.5432 1.00 2631 137 0.2325 0.2724 REMARK 3 20 2.5432 - 2.5000 1.00 2651 149 0.2469 0.2729 REMARK 3 21 2.5000 - 2.4597 1.00 2621 141 0.2488 0.2965 REMARK 3 22 2.4597 - 2.4219 1.00 2614 158 0.2478 0.2967 REMARK 3 23 2.4219 - 2.3863 1.00 2629 154 0.2637 0.3005 REMARK 3 24 2.3863 - 2.3527 0.99 2645 141 0.2735 0.3031 REMARK 3 25 2.3527 - 2.3209 0.98 2613 127 0.2743 0.3434 REMARK 3 26 2.3209 - 2.2907 0.96 2533 117 0.2730 0.3332 REMARK 3 27 2.2907 - 2.2621 0.82 2170 105 0.2887 0.3634 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 45.58 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.39290 REMARK 3 B22 (A**2) : -3.57930 REMARK 3 B33 (A**2) : -6.81360 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8051 REMARK 3 ANGLE : 1.336 10941 REMARK 3 CHIRALITY : 0.081 1219 REMARK 3 PLANARITY : 0.005 1344 REMARK 3 DIHEDRAL : 19.862 3172 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 42:513 OR RESSEQ 701: REMARK 3 701 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 42:513 OR RESSEQ 601: REMARK 3 601 ) REMARK 3 ATOM PAIRS NUMBER : 3738 REMARK 3 RMSD : 0.058 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB073798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75053 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 4G6G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.8M POTASSIUM FORMATE, 2% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, PH 4.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 63.09350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 114.79400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 63.09350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 114.79400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.93500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 63.09350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 114.79400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.93500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 63.09350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 114.79400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 722 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 855 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 791 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 793 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 820 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 THR A 25 REMARK 465 ARG A 26 REMARK 465 SER A 27 REMARK 465 THR A 28 REMARK 465 GLY A 29 REMARK 465 VAL A 30 REMARK 465 GLU A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 GLY A 36 REMARK 465 PRO A 37 REMARK 465 THR A 38 REMARK 465 SER A 39 REMARK 465 PHE A 40 REMARK 465 LYS A 41 REMARK 465 MET B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 SER B 24 REMARK 465 THR B 25 REMARK 465 ARG B 26 REMARK 465 SER B 27 REMARK 465 THR B 28 REMARK 465 GLY B 29 REMARK 465 VAL B 30 REMARK 465 GLU B 31 REMARK 465 ASN B 32 REMARK 465 SER B 33 REMARK 465 GLY B 34 REMARK 465 ALA B 35 REMARK 465 GLY B 36 REMARK 465 PRO B 37 REMARK 465 THR B 38 REMARK 465 SER B 39 REMARK 465 PHE B 40 REMARK 465 LYS B 41 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 419 O HOH A 729 1.88 REMARK 500 NH1 ARG A 206 O HOH A 924 1.88 REMARK 500 NE2 GLN A 417 O HOH A 919 1.91 REMARK 500 O HOH A 813 O HOH A 894 1.93 REMARK 500 O HOH A 961 O HOH A 966 1.97 REMARK 500 O HOH B 851 O HOH B 923 1.97 REMARK 500 O HOH B 705 O HOH B 822 1.97 REMARK 500 O HOH A 810 O HOH A 851 2.00 REMARK 500 O HOH A 761 O HOH A 951 2.01 REMARK 500 OD1 ASN B 406 O HOH B 935 2.01 REMARK 500 O HOH B 711 O HOH B 804 2.02 REMARK 500 O2A NAI A 602 O HOH A 815 2.02 REMARK 500 OD1 ASP A 425 O HOH A 945 2.02 REMARK 500 O HOH A 937 O HOH A 969 2.03 REMARK 500 O HOH A 776 O HOH A 889 2.04 REMARK 500 OD1 ASN A 295 O HOH A 784 2.04 REMARK 500 O HOH A 920 O HOH A 921 2.06 REMARK 500 O ASP B 222 O HOH B 742 2.07 REMARK 500 O HOH B 919 O HOH B 966 2.07 REMARK 500 O PRO A 438 O HOH A 808 2.08 REMARK 500 OE1 GLU B 224 O HOH B 894 2.08 REMARK 500 OE1 GLU B 453 O HOH B 881 2.08 REMARK 500 O HOH A 782 O HOH A 858 2.11 REMARK 500 O HOH B 771 O HOH B 787 2.11 REMARK 500 O2A NAI B 604 O HOH B 831 2.12 REMARK 500 O HOH B 707 O HOH B 867 2.15 REMARK 500 O HOH B 712 O HOH B 960 2.15 REMARK 500 OE2 GLU A 310 O HOH A 898 2.16 REMARK 500 OE1 GLN B 313 O HOH B 968 2.16 REMARK 500 O HOH A 755 O HOH A 962 2.16 REMARK 500 ND2 ASN A 341 O3D NAI A 602 2.16 REMARK 500 O2D NAI A 602 O HOH A 827 2.17 REMARK 500 O HOH A 871 O HOH A 966 2.18 REMARK 500 O HOH A 860 O HOH B 748 2.18 REMARK 500 O HOH A 876 O HOH B 872 2.19 REMARK 500 O HOH A 953 O HOH B 961 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 287 OG SER B 287 3454 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 362 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 362 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 362 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG B 362 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 362 NE - CZ - NH2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 162 17.14 57.23 REMARK 500 ALA A 175 57.80 -141.72 REMARK 500 LYS A 196 -33.99 -137.46 REMARK 500 SER A 297 13.42 89.45 REMARK 500 LYS A 361 -51.78 -133.30 REMARK 500 THR A 468 116.27 -165.70 REMARK 500 ALA B 162 16.43 56.93 REMARK 500 ALA B 175 54.95 -141.60 REMARK 500 LYS B 196 -33.37 -137.65 REMARK 500 SER B 297 12.88 87.86 REMARK 500 LYS B 361 -51.09 -134.69 REMARK 500 SER B 461 119.49 -164.21 REMARK 500 THR B 468 116.24 -163.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 333 O REMARK 620 2 HOH B 818 O 76.6 REMARK 620 3 HOH B 728 O 133.8 144.1 REMARK 620 4 HOH B 727 O 75.2 98.0 77.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 377 OD1 REMARK 620 2 PRO B 134 O 137.5 REMARK 620 3 TYR B 169 OH 114.4 100.4 REMARK 620 4 ASN B 137 OD1 87.6 65.2 94.7 REMARK 620 5 HOH B 908 O 78.2 91.8 138.6 126.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 266 O REMARK 620 2 SER A 297 OG 145.9 REMARK 620 3 HOH A 856 O 80.5 89.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 53 O REMARK 620 2 PRO A 48 O 161.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 192 O REMARK 620 2 THR A 189 O 93.5 REMARK 620 3 HOH A 765 O 94.5 171.6 REMARK 620 4 HOH A 757 O 69.4 96.3 89.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G6G RELATED DB: PDB REMARK 900 RELATED ID: 4G73 RELATED DB: PDB REMARK 900 RELATED ID: 4G74 RELATED DB: PDB DBREF 4G6H A 24 513 UNP P32340 NDI1_YEAST 24 513 DBREF 4G6H B 24 513 UNP P32340 NDI1_YEAST 24 513 SEQADV 4G6H MET A 12 UNP P32340 EXPRESSION TAG SEQADV 4G6H ARG A 13 UNP P32340 EXPRESSION TAG SEQADV 4G6H GLY A 14 UNP P32340 EXPRESSION TAG SEQADV 4G6H SER A 15 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS A 16 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS A 17 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS A 18 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS A 19 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS A 20 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS A 21 UNP P32340 EXPRESSION TAG SEQADV 4G6H GLY A 22 UNP P32340 EXPRESSION TAG SEQADV 4G6H SER A 23 UNP P32340 EXPRESSION TAG SEQADV 4G6H MET B 12 UNP P32340 EXPRESSION TAG SEQADV 4G6H ARG B 13 UNP P32340 EXPRESSION TAG SEQADV 4G6H GLY B 14 UNP P32340 EXPRESSION TAG SEQADV 4G6H SER B 15 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS B 16 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS B 17 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS B 18 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS B 19 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS B 20 UNP P32340 EXPRESSION TAG SEQADV 4G6H HIS B 21 UNP P32340 EXPRESSION TAG SEQADV 4G6H GLY B 22 UNP P32340 EXPRESSION TAG SEQADV 4G6H SER B 23 UNP P32340 EXPRESSION TAG SEQRES 1 A 502 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 A 502 THR ARG SER THR GLY VAL GLU ASN SER GLY ALA GLY PRO SEQRES 3 A 502 THR SER PHE LYS THR MET LYS VAL ILE ASP PRO GLN HIS SEQRES 4 A 502 SER ASP LYS PRO ASN VAL LEU ILE LEU GLY SER GLY TRP SEQRES 5 A 502 GLY ALA ILE SER PHE LEU LYS HIS ILE ASP THR LYS LYS SEQRES 6 A 502 TYR ASN VAL SER ILE ILE SER PRO ARG SER TYR PHE LEU SEQRES 7 A 502 PHE THR PRO LEU LEU PRO SER ALA PRO VAL GLY THR VAL SEQRES 8 A 502 ASP GLU LYS SER ILE ILE GLU PRO ILE VAL ASN PHE ALA SEQRES 9 A 502 LEU LYS LYS LYS GLY ASN VAL THR TYR TYR GLU ALA GLU SEQRES 10 A 502 ALA THR SER ILE ASN PRO ASP ARG ASN THR VAL THR ILE SEQRES 11 A 502 LYS SER LEU SER ALA VAL SER GLN LEU TYR GLN PRO GLU SEQRES 12 A 502 ASN HIS LEU GLY LEU HIS GLN ALA GLU PRO ALA GLU ILE SEQRES 13 A 502 LYS TYR ASP TYR LEU ILE SER ALA VAL GLY ALA GLU PRO SEQRES 14 A 502 ASN THR PHE GLY ILE PRO GLY VAL THR ASP TYR GLY HIS SEQRES 15 A 502 PHE LEU LYS GLU ILE PRO ASN SER LEU GLU ILE ARG ARG SEQRES 16 A 502 THR PHE ALA ALA ASN LEU GLU LYS ALA ASN LEU LEU PRO SEQRES 17 A 502 LYS GLY ASP PRO GLU ARG ARG ARG LEU LEU SER ILE VAL SEQRES 18 A 502 VAL VAL GLY GLY GLY PRO THR GLY VAL GLU ALA ALA GLY SEQRES 19 A 502 GLU LEU GLN ASP TYR VAL HIS GLN ASP LEU ARG LYS PHE SEQRES 20 A 502 LEU PRO ALA LEU ALA GLU GLU VAL GLN ILE HIS LEU VAL SEQRES 21 A 502 GLU ALA LEU PRO ILE VAL LEU ASN MET PHE GLU LYS LYS SEQRES 22 A 502 LEU SER SER TYR ALA GLN SER HIS LEU GLU ASN THR SER SEQRES 23 A 502 ILE LYS VAL HIS LEU ARG THR ALA VAL ALA LYS VAL GLU SEQRES 24 A 502 GLU LYS GLN LEU LEU ALA LYS THR LYS HIS GLU ASP GLY SEQRES 25 A 502 LYS ILE THR GLU GLU THR ILE PRO TYR GLY THR LEU ILE SEQRES 26 A 502 TRP ALA THR GLY ASN LYS ALA ARG PRO VAL ILE THR ASP SEQRES 27 A 502 LEU PHE LYS LYS ILE PRO GLU GLN ASN SER SER LYS ARG SEQRES 28 A 502 GLY LEU ALA VAL ASN ASP PHE LEU GLN VAL LYS GLY SER SEQRES 29 A 502 ASN ASN ILE PHE ALA ILE GLY ASP ASN ALA PHE ALA GLY SEQRES 30 A 502 LEU PRO PRO THR ALA GLN VAL ALA HIS GLN GLU ALA GLU SEQRES 31 A 502 TYR LEU ALA LYS ASN PHE ASP LYS MET ALA GLN ILE PRO SEQRES 32 A 502 ASN PHE GLN LYS ASN LEU SER SER ARG LYS ASP LYS ILE SEQRES 33 A 502 ASP LEU LEU PHE GLU GLU ASN ASN PHE LYS PRO PHE LYS SEQRES 34 A 502 TYR ASN ASP LEU GLY ALA LEU ALA TYR LEU GLY SER GLU SEQRES 35 A 502 ARG ALA ILE ALA THR ILE ARG SER GLY LYS ARG THR PHE SEQRES 36 A 502 TYR THR GLY GLY GLY LEU MET THR PHE TYR LEU TRP ARG SEQRES 37 A 502 ILE LEU TYR LEU SER MET ILE LEU SER ALA ARG SER ARG SEQRES 38 A 502 LEU LYS VAL PHE PHE ASP TRP ILE LYS LEU ALA PHE PHE SEQRES 39 A 502 LYS ARG ASP PHE PHE LYS GLY LEU SEQRES 1 B 502 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 B 502 THR ARG SER THR GLY VAL GLU ASN SER GLY ALA GLY PRO SEQRES 3 B 502 THR SER PHE LYS THR MET LYS VAL ILE ASP PRO GLN HIS SEQRES 4 B 502 SER ASP LYS PRO ASN VAL LEU ILE LEU GLY SER GLY TRP SEQRES 5 B 502 GLY ALA ILE SER PHE LEU LYS HIS ILE ASP THR LYS LYS SEQRES 6 B 502 TYR ASN VAL SER ILE ILE SER PRO ARG SER TYR PHE LEU SEQRES 7 B 502 PHE THR PRO LEU LEU PRO SER ALA PRO VAL GLY THR VAL SEQRES 8 B 502 ASP GLU LYS SER ILE ILE GLU PRO ILE VAL ASN PHE ALA SEQRES 9 B 502 LEU LYS LYS LYS GLY ASN VAL THR TYR TYR GLU ALA GLU SEQRES 10 B 502 ALA THR SER ILE ASN PRO ASP ARG ASN THR VAL THR ILE SEQRES 11 B 502 LYS SER LEU SER ALA VAL SER GLN LEU TYR GLN PRO GLU SEQRES 12 B 502 ASN HIS LEU GLY LEU HIS GLN ALA GLU PRO ALA GLU ILE SEQRES 13 B 502 LYS TYR ASP TYR LEU ILE SER ALA VAL GLY ALA GLU PRO SEQRES 14 B 502 ASN THR PHE GLY ILE PRO GLY VAL THR ASP TYR GLY HIS SEQRES 15 B 502 PHE LEU LYS GLU ILE PRO ASN SER LEU GLU ILE ARG ARG SEQRES 16 B 502 THR PHE ALA ALA ASN LEU GLU LYS ALA ASN LEU LEU PRO SEQRES 17 B 502 LYS GLY ASP PRO GLU ARG ARG ARG LEU LEU SER ILE VAL SEQRES 18 B 502 VAL VAL GLY GLY GLY PRO THR GLY VAL GLU ALA ALA GLY SEQRES 19 B 502 GLU LEU GLN ASP TYR VAL HIS GLN ASP LEU ARG LYS PHE SEQRES 20 B 502 LEU PRO ALA LEU ALA GLU GLU VAL GLN ILE HIS LEU VAL SEQRES 21 B 502 GLU ALA LEU PRO ILE VAL LEU ASN MET PHE GLU LYS LYS SEQRES 22 B 502 LEU SER SER TYR ALA GLN SER HIS LEU GLU ASN THR SER SEQRES 23 B 502 ILE LYS VAL HIS LEU ARG THR ALA VAL ALA LYS VAL GLU SEQRES 24 B 502 GLU LYS GLN LEU LEU ALA LYS THR LYS HIS GLU ASP GLY SEQRES 25 B 502 LYS ILE THR GLU GLU THR ILE PRO TYR GLY THR LEU ILE SEQRES 26 B 502 TRP ALA THR GLY ASN LYS ALA ARG PRO VAL ILE THR ASP SEQRES 27 B 502 LEU PHE LYS LYS ILE PRO GLU GLN ASN SER SER LYS ARG SEQRES 28 B 502 GLY LEU ALA VAL ASN ASP PHE LEU GLN VAL LYS GLY SER SEQRES 29 B 502 ASN ASN ILE PHE ALA ILE GLY ASP ASN ALA PHE ALA GLY SEQRES 30 B 502 LEU PRO PRO THR ALA GLN VAL ALA HIS GLN GLU ALA GLU SEQRES 31 B 502 TYR LEU ALA LYS ASN PHE ASP LYS MET ALA GLN ILE PRO SEQRES 32 B 502 ASN PHE GLN LYS ASN LEU SER SER ARG LYS ASP LYS ILE SEQRES 33 B 502 ASP LEU LEU PHE GLU GLU ASN ASN PHE LYS PRO PHE LYS SEQRES 34 B 502 TYR ASN ASP LEU GLY ALA LEU ALA TYR LEU GLY SER GLU SEQRES 35 B 502 ARG ALA ILE ALA THR ILE ARG SER GLY LYS ARG THR PHE SEQRES 36 B 502 TYR THR GLY GLY GLY LEU MET THR PHE TYR LEU TRP ARG SEQRES 37 B 502 ILE LEU TYR LEU SER MET ILE LEU SER ALA ARG SER ARG SEQRES 38 B 502 LEU LYS VAL PHE PHE ASP TRP ILE LYS LEU ALA PHE PHE SEQRES 39 B 502 LYS ARG ASP PHE PHE LYS GLY LEU HET FAD A 601 53 HET NAI A 602 44 HET MG A 603 1 HET MG A 604 1 HET MG A 605 1 HET MG B 601 1 HET MG B 602 1 HET MG B 603 1 HET NAI B 604 44 HET FAD B 605 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM MG MAGNESIUM ION HETSYN NAI NADH FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 NAI 2(C21 H29 N7 O14 P2) FORMUL 5 MG 6(MG 2+) FORMUL 13 HOH *545(H2 O) HELIX 1 1 GLY A 62 ILE A 72 1 11 HELIX 2 2 THR A 91 ALA A 97 5 7 HELIX 3 3 ASP A 103 SER A 106 5 4 HELIX 4 4 ILE A 111 LEU A 116 1 6 HELIX 5 5 PRO A 134 ARG A 136 5 3 HELIX 6 6 GLY A 187 GLY A 192 1 6 HELIX 7 7 GLU A 197 LEU A 218 1 22 HELIX 8 8 ASP A 222 LEU A 229 1 8 HELIX 9 9 GLY A 237 ASP A 254 1 18 HELIX 10 10 ASP A 254 LEU A 259 1 6 HELIX 11 11 LEU A 259 VAL A 266 1 8 HELIX 12 12 GLU A 282 THR A 296 1 15 HELIX 13 13 ARG A 344 ILE A 354 1 11 HELIX 14 14 PRO A 355 ASN A 358 5 4 HELIX 15 15 THR A 392 ALA A 411 1 20 HELIX 16 16 ILE A 413 LEU A 420 1 8 HELIX 17 17 LYS A 426 ASN A 434 1 9 HELIX 18 18 LEU A 472 ILE A 486 1 15 HELIX 19 19 SER A 488 PHE A 505 1 18 HELIX 20 20 GLY B 62 ILE B 72 1 11 HELIX 21 21 THR B 91 ALA B 97 5 7 HELIX 22 22 ASP B 103 SER B 106 5 4 HELIX 23 23 ILE B 111 LEU B 116 1 6 HELIX 24 24 PRO B 134 ARG B 136 5 3 HELIX 25 25 GLY B 187 GLY B 192 1 6 HELIX 26 26 GLU B 197 LEU B 218 1 22 HELIX 27 27 ASP B 222 LEU B 229 1 8 HELIX 28 28 GLY B 237 ASP B 254 1 18 HELIX 29 29 ASP B 254 LEU B 259 1 6 HELIX 30 30 LEU B 259 VAL B 266 1 8 HELIX 31 31 GLU B 282 THR B 296 1 15 HELIX 32 32 ARG B 344 ILE B 354 1 11 HELIX 33 33 PRO B 355 ASN B 358 5 4 HELIX 34 34 GLY B 382 ALA B 385 5 4 HELIX 35 35 THR B 392 ALA B 411 1 20 HELIX 36 36 ILE B 413 LEU B 420 1 8 HELIX 37 37 LYS B 426 ASN B 434 1 9 HELIX 38 38 LEU B 472 ILE B 486 1 15 HELIX 39 39 SER B 488 PHE B 505 1 18 SHEET 1 A 8 LYS A 44 ILE A 46 0 SHEET 2 A 8 ALA A 165 LYS A 168 1 O GLU A 166 N ILE A 46 SHEET 3 A 8 THR A 138 GLN A 149 -1 N ILE A 141 O ALA A 165 SHEET 4 A 8 VAL A 122 ASN A 133 -1 N THR A 130 O THR A 140 SHEET 5 A 8 ASN A 78 SER A 83 1 N ILE A 81 O TYR A 125 SHEET 6 A 8 ASN A 55 LEU A 59 1 N VAL A 56 O ASN A 78 SHEET 7 A 8 TYR A 171 SER A 174 1 O ILE A 173 N LEU A 57 SHEET 8 A 8 ILE A 378 ALA A 380 1 O PHE A 379 N SER A 174 SHEET 1 B 2 TYR A 87 LEU A 89 0 SHEET 2 B 2 ILE A 108 PRO A 110 -1 O GLU A 109 N PHE A 88 SHEET 1 C 2 GLU A 179 PRO A 180 0 SHEET 2 C 2 ASN A 341 LYS A 342 -1 O LYS A 342 N GLU A 179 SHEET 1 D 5 HIS A 193 PHE A 194 0 SHEET 2 D 5 THR A 334 TRP A 337 1 O TRP A 337 N HIS A 193 SHEET 3 D 5 SER A 230 VAL A 234 1 N VAL A 232 O ILE A 336 SHEET 4 D 5 GLN A 267 VAL A 271 1 O HIS A 269 N VAL A 233 SHEET 5 D 5 LYS A 299 HIS A 301 1 O HIS A 301 N LEU A 270 SHEET 1 E 3 THR A 304 VAL A 309 0 SHEET 2 E 3 GLN A 313 LYS A 319 -1 O LEU A 315 N LYS A 308 SHEET 3 E 3 ILE A 325 PRO A 331 -1 O GLU A 328 N ALA A 316 SHEET 1 F 2 LEU A 364 ALA A 365 0 SHEET 2 F 2 ALA A 385 PHE A 386 1 O PHE A 386 N LEU A 364 SHEET 1 G 3 GLY A 445 TYR A 449 0 SHEET 2 G 3 ALA A 455 SER A 461 -1 O THR A 458 N ALA A 446 SHEET 3 G 3 ARG A 464 GLY A 471 -1 O TYR A 467 N ILE A 459 SHEET 1 H 8 LYS B 44 ILE B 46 0 SHEET 2 H 8 ALA B 165 LYS B 168 1 O GLU B 166 N ILE B 46 SHEET 3 H 8 THR B 138 LEU B 150 -1 N ILE B 141 O ALA B 165 SHEET 4 H 8 VAL B 122 ASN B 133 -1 N GLU B 126 O SER B 145 SHEET 5 H 8 ASN B 78 SER B 83 1 N ILE B 81 O TYR B 125 SHEET 6 H 8 ASN B 55 LEU B 59 1 N VAL B 56 O ASN B 78 SHEET 7 H 8 TYR B 171 SER B 174 1 O ILE B 173 N LEU B 57 SHEET 8 H 8 ILE B 378 ALA B 380 1 O PHE B 379 N LEU B 172 SHEET 1 I 2 TYR B 87 LEU B 89 0 SHEET 2 I 2 ILE B 108 PRO B 110 -1 O GLU B 109 N PHE B 88 SHEET 1 J 2 GLU B 179 PRO B 180 0 SHEET 2 J 2 ASN B 341 LYS B 342 -1 O LYS B 342 N GLU B 179 SHEET 1 K 5 HIS B 193 PHE B 194 0 SHEET 2 K 5 THR B 334 TRP B 337 1 O TRP B 337 N HIS B 193 SHEET 3 K 5 SER B 230 VAL B 234 1 N VAL B 232 O ILE B 336 SHEET 4 K 5 GLN B 267 VAL B 271 1 O HIS B 269 N VAL B 233 SHEET 5 K 5 LYS B 299 HIS B 301 1 O HIS B 301 N LEU B 270 SHEET 1 L 3 THR B 304 VAL B 309 0 SHEET 2 L 3 GLN B 313 LYS B 319 -1 O LEU B 315 N LYS B 308 SHEET 3 L 3 ILE B 325 PRO B 331 -1 O GLU B 328 N ALA B 316 SHEET 1 M 3 GLY B 445 TYR B 449 0 SHEET 2 M 3 ALA B 455 SER B 461 -1 O THR B 458 N ALA B 446 SHEET 3 M 3 ARG B 464 GLY B 471 -1 O PHE B 466 N ILE B 459 LINK O GLY B 333 MG MG B 602 1555 1555 2.67 LINK OD1 ASN B 377 MG MG B 603 1555 1555 2.71 LINK O VAL A 266 MG MG A 604 1555 1555 2.71 LINK O PRO B 134 MG MG B 603 1555 1555 2.73 LINK OH TYR B 169 MG MG B 603 1555 1555 2.78 LINK OD1 ASN B 137 MG MG B 603 1555 1555 2.80 LINK OG SER A 297 MG MG A 604 1555 1555 2.81 LINK O LYS A 53 MG MG A 605 1555 1555 2.85 LINK O GLY A 192 MG MG A 603 1555 1555 2.85 LINK O THR A 189 MG MG A 603 1555 1555 2.92 LINK O PRO A 48 MG MG A 605 1555 1555 2.96 LINK MG MG A 604 O HOH A 856 1555 1555 2.47 LINK MG MG A 603 O HOH A 765 1555 1555 2.65 LINK MG MG A 603 O HOH A 757 1555 1555 2.76 LINK MG MG B 602 O HOH B 818 1555 1555 2.86 LINK MG MG B 602 O HOH B 728 1555 1555 2.89 LINK MG MG B 603 O HOH B 908 1555 1555 2.94 LINK MG MG B 602 O HOH B 727 1555 1555 2.96 SITE 1 AC1 39 GLY A 60 SER A 61 GLY A 62 TRP A 63 SITE 2 AC1 39 GLY A 64 ILE A 82 SER A 83 PRO A 84 SITE 3 AC1 39 ARG A 85 THR A 91 PRO A 92 GLU A 128 SITE 4 AC1 39 ALA A 129 ALA A 175 VAL A 176 GLY A 177 SITE 5 AC1 39 LEU A 195 THR A 239 ARG A 344 GLY A 382 SITE 6 AC1 39 ASP A 383 PRO A 391 THR A 392 ALA A 393 SITE 7 AC1 39 GLN A 394 ALA A 396 TYR A 482 NAI A 602 SITE 8 AC1 39 HOH A 701 HOH A 706 HOH A 707 HOH A 709 SITE 9 AC1 39 HOH A 713 HOH A 730 HOH A 731 HOH A 733 SITE 10 AC1 39 HOH A 740 HOH A 768 HOH A 824 SITE 1 AC2 30 VAL A 234 GLY A 235 GLY A 237 PRO A 238 SITE 2 AC2 30 THR A 239 GLU A 242 GLU A 272 ALA A 273 SITE 3 AC2 30 LEU A 274 THR A 304 ALA A 305 VAL A 306 SITE 4 AC2 30 ALA A 338 THR A 339 GLY A 340 ASN A 341 SITE 5 AC2 30 PRO A 391 THR A 392 FAD A 601 HOH A 701 SITE 6 AC2 30 HOH A 723 HOH A 761 HOH A 770 HOH A 774 SITE 7 AC2 30 HOH A 809 HOH A 815 HOH A 827 HOH A 863 SITE 8 AC2 30 HOH A 921 HOH A 956 SITE 1 AC3 4 THR A 189 GLY A 192 HOH A 757 HOH A 765 SITE 1 AC4 5 VAL A 266 SER A 297 HOH A 714 HOH A 736 SITE 2 AC4 5 HOH A 856 SITE 1 AC5 5 PRO A 48 GLN A 49 SER A 51 LYS A 53 SITE 2 AC5 5 ASN A 55 SITE 1 AC6 1 GLU B 203 SITE 1 AC7 4 GLY B 333 HOH B 727 HOH B 728 HOH B 818 SITE 1 AC8 6 PRO B 134 ASN B 137 TYR B 169 ASN B 377 SITE 2 AC8 6 ILE B 378 HOH B 908 SITE 1 AC9 28 VAL B 234 GLY B 235 PRO B 238 THR B 239 SITE 2 AC9 28 GLU B 242 VAL B 271 GLU B 272 ALA B 273 SITE 3 AC9 28 LEU B 274 THR B 304 ALA B 305 VAL B 306 SITE 4 AC9 28 THR B 339 GLY B 340 ASN B 341 PRO B 391 SITE 5 AC9 28 THR B 392 FAD B 605 HOH B 701 HOH B 704 SITE 6 AC9 28 HOH B 751 HOH B 777 HOH B 794 HOH B 817 SITE 7 AC9 28 HOH B 831 HOH B 868 HOH B 877 HOH B 888 SITE 1 BC1 37 GLY B 60 SER B 61 GLY B 62 TRP B 63 SITE 2 BC1 37 GLY B 64 ILE B 82 SER B 83 PRO B 84 SITE 3 BC1 37 ARG B 85 THR B 91 PRO B 92 GLU B 128 SITE 4 BC1 37 ALA B 129 ALA B 175 VAL B 176 GLY B 177 SITE 5 BC1 37 THR B 239 ARG B 344 GLY B 382 ASP B 383 SITE 6 BC1 37 PRO B 391 THR B 392 ALA B 393 GLN B 394 SITE 7 BC1 37 ALA B 396 TYR B 482 NAI B 604 HOH B 701 SITE 8 BC1 37 HOH B 703 HOH B 720 HOH B 726 HOH B 730 SITE 9 BC1 37 HOH B 735 HOH B 738 HOH B 741 HOH B 784 SITE 10 BC1 37 HOH B 801 CRYST1 126.187 229.588 111.870 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008939 0.00000