PDB Short entry for 4G6J HEADER IMMUNE SYSTEM 19-JUL-12 4G6J TITLE CRYSTAL STRUCTURE OF HUMAN IL-1BETA IN COMPLEX WITH THE THERAPEUTIC TITLE 2 ANTIBODY BINDING FRAGMENT OF CANAKINUMAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN INTERLEUKIN-1BETA; COMPND 5 SYNONYM: IL-1 BETA, CATABOLIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HEAVY CHAIN OF ANTIBODY BINDING FRAGMENT OF CANAKINUMAB; COMPND 9 CHAIN: H; COMPND 10 FRAGMENT: HEAVY CHAIN OF ANTIBODY BINDING FRAGMENT OF CANAKINUMAB; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: LIGHT CHAIN OF ANTIBODY BINDING FRAGMENT OF CANAKINUMAB; COMPND 14 CHAIN: L; COMPND 15 FRAGMENT: LIGHT CHAIN OF ANTIBODY BINDING FRAGMENT OF CANAKINUMAB; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS IMMUNGLOBULIN FOLD, INTERLEUKIN-1BETA BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.BLECH,S.HOERER REVDAT 3 13-SEP-23 4G6J 1 REMARK SEQADV REVDAT 2 17-JUL-13 4G6J 1 JRNL REVDAT 1 19-DEC-12 4G6J 0 JRNL AUTH M.BLECH,D.PETER,P.FISCHER,M.M.BAUER,M.HAFNER,M.ZEEB,H.NAR JRNL TITL ONE TRAGET-TWO DIFFERENT BINDING MODES: STRUCTURAL INSIGHTS JRNL TITL 2 INTO GEVOKIZUMAB AND CANAKINUMAB INTERACTIONS TO JRNL TITL 3 INTERLEUKIN-1BETA JRNL REF J.MOL.BIOL. V. 425 94 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23041424 JRNL DOI 10.1016/J.JMB.2012.09.021 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 37684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1891 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.59 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2749 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2175 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2606 REMARK 3 BIN R VALUE (WORKING SET) : 0.2173 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4466 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.08960 REMARK 3 B22 (A**2) : -0.84820 REMARK 3 B33 (A**2) : 7.93780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.231 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4575 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6211 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1550 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 111 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 657 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4575 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 595 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5151 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.51 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|4 - A|152 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.5512 -12.2017 -36.2569 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.0139 REMARK 3 T33: -0.1711 T12: -0.0311 REMARK 3 T13: 0.0225 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 2.0583 L22: 1.5259 REMARK 3 L33: 1.6968 L12: 0.8840 REMARK 3 L13: -0.4522 L23: -0.7633 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.1359 S13: 0.0177 REMARK 3 S21: 0.2270 S22: 0.0706 S23: 0.0632 REMARK 3 S31: -0.0396 S32: -0.3307 S33: -0.0781 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { H|1 - H|218 } REMARK 3 ORIGIN FOR THE GROUP (A): 37.6745 -8.8056 -76.0438 REMARK 3 T TENSOR REMARK 3 T11: -0.0235 T22: -0.0980 REMARK 3 T33: -0.0495 T12: 0.0175 REMARK 3 T13: -0.0106 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.1688 L22: 0.5104 REMARK 3 L33: 2.4357 L12: 0.1613 REMARK 3 L13: -0.3350 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: -0.0232 S13: -0.0058 REMARK 3 S21: -0.0306 S22: 0.0455 S23: -0.0485 REMARK 3 S31: -0.0070 S32: 0.1515 S33: -0.0965 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { L|1 - L|212 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.9125 -5.6650 -84.9250 REMARK 3 T TENSOR REMARK 3 T11: -0.0178 T22: -0.1218 REMARK 3 T33: -0.0820 T12: 0.0025 REMARK 3 T13: -0.0193 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.7887 L22: 0.2833 REMARK 3 L33: 2.1385 L12: -0.1068 REMARK 3 L13: -0.1399 L23: -0.2771 REMARK 3 S TENSOR REMARK 3 S11: 0.0423 S12: 0.0500 S13: -0.0655 REMARK 3 S21: -0.1021 S22: 0.0240 S23: 0.0440 REMARK 3 S31: -0.0665 S32: -0.2651 S33: -0.0663 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, AUTOPROC, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38275 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 94.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.12000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.10800 REMARK 200 R SYM FOR SHELL (I) : 0.12000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PZ5, 3BKJ, 1TOO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.2% W/V PEG 3350 AND 0.14M TRI REMARK 280 -SODIUM CITRATE, 24% W/V PEG 3350, PH 4.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.53050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.70900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.70900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.53050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 18.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 SER A 153 REMARK 465 LEU A 154 REMARK 465 VAL A 155 REMARK 465 PRO A 156 REMARK 465 ARG A 157 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 4 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 88 CB CG CD CE NZ REMARK 480 LYS A 93 CB CG CD CE NZ REMARK 480 GLY H 195 CA REMARK 480 LYS H 206 CB CG CD CE NZ REMARK 480 LYS H 211 CG CD CE NZ REMARK 480 ARG H 215 N C O CB CG CD NE REMARK 480 ARG H 215 CZ NH1 NH2 REMARK 480 GLU L 17 CG REMARK 480 LYS L 126 N C O CB CG CD CE REMARK 480 LYS L 126 NZ REMARK 480 LYS L 145 CG CE NZ REMARK 480 LEU L 154 CD1 CD2 REMARK 480 LYS L 190 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 63 -55.94 55.76 REMARK 500 ASN A 66 43.00 -84.71 REMARK 500 ILE A 106 -105.50 -99.01 REMARK 500 ASN A 107 73.91 -112.08 REMARK 500 VAL H 48 -63.23 -95.72 REMARK 500 LEU H 129 79.62 -113.21 REMARK 500 ASP H 213 76.31 -114.61 REMARK 500 LYS L 16 -5.82 74.08 REMARK 500 LEU L 47 -60.83 -107.76 REMARK 500 ALA L 51 -45.54 63.93 REMARK 500 SER L 77 68.70 37.95 REMARK 500 ALA L 83 97.36 -67.13 REMARK 500 GLU L 143 104.96 -58.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G5Z RELATED DB: PDB REMARK 900 ANTIBODY BINDING FRAGMENT IN ITS UNBOUND STATE DBREF 4G6J A 1 153 UNP P01584 IL1B_HUMAN 117 269 DBREF 4G6J H 1 218 PDB 4G6J 4G6J 1 218 DBREF 4G6J L 1 212 PDB 4G6J 4G6J 1 212 SEQADV 4G6J MET A 0 UNP P01584 EXPRESSION TAG SEQADV 4G6J LEU A 154 UNP P01584 EXPRESSION TAG SEQADV 4G6J VAL A 155 UNP P01584 EXPRESSION TAG SEQADV 4G6J PRO A 156 UNP P01584 EXPRESSION TAG SEQADV 4G6J ARG A 157 UNP P01584 EXPRESSION TAG SEQRES 1 A 158 MET ALA PRO VAL ARG SER LEU ASN CYS THR LEU ARG ASP SEQRES 2 A 158 SER GLN GLN LYS SER LEU VAL MET SER GLY PRO TYR GLU SEQRES 3 A 158 LEU LYS ALA LEU HIS LEU GLN GLY GLN ASP MET GLU GLN SEQRES 4 A 158 GLN VAL VAL PHE SER MET SER PHE VAL GLN GLY GLU GLU SEQRES 5 A 158 SER ASN ASP LYS ILE PRO VAL ALA LEU GLY LEU LYS GLU SEQRES 6 A 158 LYS ASN LEU TYR LEU SER CYS VAL LEU LYS ASP ASP LYS SEQRES 7 A 158 PRO THR LEU GLN LEU GLU SER VAL ASP PRO LYS ASN TYR SEQRES 8 A 158 PRO LYS LYS LYS MET GLU LYS ARG PHE VAL PHE ASN LYS SEQRES 9 A 158 ILE GLU ILE ASN ASN LYS LEU GLU PHE GLU SER ALA GLN SEQRES 10 A 158 PHE PRO ASN TRP TYR ILE SER THR SER GLN ALA GLU ASN SEQRES 11 A 158 MET PRO VAL PHE LEU GLY GLY THR LYS GLY GLY GLN ASP SEQRES 12 A 158 ILE THR ASP PHE THR MET GLN PHE VAL SER SER LEU VAL SEQRES 13 A 158 PRO ARG SEQRES 1 H 218 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 218 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 218 PHE THR PHE SER VAL TYR GLY MET ASN TRP VAL ARG GLN SEQRES 4 H 218 ALA PRO ALA LYS GLY LEU GLU TRP VAL ALA ILE ILE TRP SEQRES 5 H 218 TYR ASP GLY ASP ASN GLN TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 218 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 218 LEU TYR LEU GLN MET ASN GLY LEU ARG ALA GLU ASP THR SEQRES 8 H 218 ALA VAL TYR TYR CYS ALA ARG ASP LEU ARG THR GLY PRO SEQRES 9 H 218 PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 218 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 218 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 218 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 218 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 218 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 218 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 218 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 218 ASN THR LYS VAL ASP LYS ARG VAL ALA PRO SEQRES 1 L 212 GLU ILE VAL LEU THR GLN SER PRO ASP PHE GLN SER VAL SEQRES 2 L 212 THR PRO LYS GLU LYS VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 212 GLN SER ILE GLY SER SER LEU HIS TRP TYR GLN GLN LYS SEQRES 4 L 212 PRO ASP GLN SER PRO LYS LEU LEU ILE LYS TYR ALA SER SEQRES 5 L 212 GLN SER PHE SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 212 GLY SER GLY THR ASP PHE THR LEU THR ILE ASN SER LEU SEQRES 7 L 212 GLU ALA GLU ASP ALA ALA ALA TYR TYR CYS HIS GLN SER SEQRES 8 L 212 SER SER LEU PRO PHE THR PHE GLY PRO GLY THR LYS VAL SEQRES 9 L 212 ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 212 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 212 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 212 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 212 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 212 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 212 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 212 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 212 PHE ASN ARG GLY FORMUL 4 HOH *303(H2 O) HELIX 1 1 GLN A 32 GLN A 39 5 8 HELIX 2 2 GLU A 96 ARG A 98 5 3 HELIX 3 3 THR H 28 TYR H 32 5 5 HELIX 4 4 ARG H 87 THR H 91 5 5 HELIX 5 5 SER H 132 LYS H 134 5 3 HELIX 6 6 SER H 161 ALA H 163 5 3 HELIX 7 7 SER H 192 LEU H 194 5 3 HELIX 8 8 LYS H 206 ASN H 209 5 4 HELIX 9 9 GLU L 79 ALA L 83 5 5 HELIX 10 10 SER L 121 SER L 127 1 7 HELIX 11 11 LYS L 183 HIS L 189 1 7 SHEET 1 A 7 SER A 5 ASP A 12 0 SHEET 2 A 7 PHE A 42 PHE A 46 -1 O PHE A 42 N CYS A 8 SHEET 3 A 7 LYS A 55 GLY A 61 -1 O GLY A 61 N SER A 43 SHEET 4 A 7 VAL A 100 GLU A 105 -1 O PHE A 101 N VAL A 58 SHEET 5 A 7 LEU A 110 SER A 114 -1 O GLU A 113 N ASN A 102 SHEET 6 A 7 PHE A 146 PHE A 150 -1 O PHE A 146 N LEU A 110 SHEET 7 A 7 SER A 5 ASP A 12 -1 N ARG A 11 O THR A 147 SHEET 1 B 3 SER A 17 GLY A 22 0 SHEET 2 B 3 GLU A 25 LEU A 29 -1 O GLU A 25 N SER A 21 SHEET 3 B 3 MET A 130 PRO A 131 -1 O MET A 130 N ALA A 28 SHEET 1 C 2 LEU A 67 LYS A 74 0 SHEET 2 C 2 LYS A 77 SER A 84 -1 O GLN A 81 N SER A 70 SHEET 1 D 2 TYR A 121 SER A 123 0 SHEET 2 D 2 PHE A 133 GLY A 135 -1 O PHE A 133 N SER A 123 SHEET 1 E 4 GLN H 3 SER H 7 0 SHEET 2 E 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 E 4 THR H 78 MET H 83 -1 O LEU H 81 N LEU H 20 SHEET 4 E 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 F 6 GLY H 10 VAL H 12 0 SHEET 2 F 6 THR H 112 VAL H 116 1 O THR H 115 N GLY H 10 SHEET 3 F 6 ALA H 92 ASP H 99 -1 N TYR H 94 O THR H 112 SHEET 4 F 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 F 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 F 6 GLN H 58 TYR H 60 -1 O TYR H 59 N ILE H 50 SHEET 1 G 4 GLY H 10 VAL H 12 0 SHEET 2 G 4 THR H 112 VAL H 116 1 O THR H 115 N GLY H 10 SHEET 3 G 4 ALA H 92 ASP H 99 -1 N TYR H 94 O THR H 112 SHEET 4 G 4 PHE H 105 TRP H 108 -1 O TYR H 107 N ARG H 98 SHEET 1 H 4 SER H 125 LEU H 129 0 SHEET 2 H 4 THR H 140 TYR H 150 -1 O LEU H 146 N PHE H 127 SHEET 3 H 4 TYR H 181 PRO H 190 -1 O TYR H 181 N TYR H 150 SHEET 4 H 4 HIS H 169 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 I 4 THR H 136 SER H 137 0 SHEET 2 I 4 THR H 140 TYR H 150 -1 O THR H 140 N SER H 137 SHEET 3 I 4 TYR H 181 PRO H 190 -1 O TYR H 181 N TYR H 150 SHEET 4 I 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 J 3 THR H 156 TRP H 159 0 SHEET 2 J 3 ILE H 200 HIS H 205 -1 O ASN H 202 N SER H 158 SHEET 3 J 3 THR H 210 ARG H 215 -1 O VAL H 212 N VAL H 203 SHEET 1 K 4 LEU L 4 SER L 7 0 SHEET 2 K 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 K 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 K 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 L 6 PHE L 10 VAL L 13 0 SHEET 2 L 6 THR L 102 ILE L 106 1 O ASP L 105 N GLN L 11 SHEET 3 L 6 ALA L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 L 6 LEU L 33 GLN L 38 -1 N GLN L 38 O ALA L 85 SHEET 5 L 6 LYS L 45 LYS L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 L 6 GLN L 53 SER L 54 -1 O GLN L 53 N LYS L 49 SHEET 1 M 4 PHE L 10 VAL L 13 0 SHEET 2 M 4 THR L 102 ILE L 106 1 O ASP L 105 N GLN L 11 SHEET 3 M 4 ALA L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 M 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 N 4 SER L 114 PHE L 118 0 SHEET 2 N 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 N 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 N 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 O 4 ALA L 153 LEU L 154 0 SHEET 2 O 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 O 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 O 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 2 CYS H 145 CYS H 201 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 TYR A 90 PRO A 91 0 1.04 CISPEP 2 PHE H 151 PRO H 152 0 -4.13 CISPEP 3 GLU H 153 PRO H 154 0 3.10 CISPEP 4 SER L 7 PRO L 8 0 -3.13 CISPEP 5 LEU L 94 PRO L 95 0 -0.54 CISPEP 6 TYR L 140 PRO L 141 0 0.01 CRYST1 81.061 37.300 189.418 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012336 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005279 0.00000