PDB Short entry for 4G6L HEADER TRANSFERASE/TRANSCRIPTION 19-JUL-12 4G6L TITLE CRYSTAL STRUCTURE OF HUMAN CDK8/CYCC IN THE DMG-IN CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-403; COMPND 5 SYNONYM: CELL DIVISION PROTEIN KINASE 8, MEDIATOR COMPLEX SUBUNIT COMPND 6 CDK8, MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT CDK8, COMPND 7 PROTEIN KINASE K35; COMPND 8 EC: 2.7.11.22, 2.7.11.23; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CYCLIN-C; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: SRB11 HOMOLOG, HSRB11; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK8; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: CCNC; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS PROTEIN KINASE COMPLEX, PROTEROS, TRANSFERASE-TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.V.SCHNEIDER,M.BLAESSE,R.HUBER,K.MASKOS REVDAT 3 13-SEP-23 4G6L 1 REMARK SEQADV REVDAT 2 01-APR-15 4G6L 1 JRNL REVDAT 1 01-MAY-13 4G6L 0 JRNL AUTH E.V.SCHNEIDER,J.BOTTCHER,R.HUBER,K.MASKOS,L.NEUMANN JRNL TITL STRUCTURE-KINETIC RELATIONSHIP STUDY OF CDK8/CYCC SPECIFIC JRNL TITL 2 COMPOUNDS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 8081 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23630251 JRNL DOI 10.1073/PNAS.1305378110 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : 844 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1670 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5004 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -2.79000 REMARK 3 B33 (A**2) : 3.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.647 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.332 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.944 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4926 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3400 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6675 ; 1.212 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8174 ; 1.402 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 598 ; 5.743 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;33.209 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 810 ;13.329 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.451 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 718 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5452 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1052 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3004 ; 1.535 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1195 ; 0.212 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4812 ; 2.762 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1922 ; 3.855 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1863 ; 5.672 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3820 34.6000 228.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.3149 T22: 0.2833 REMARK 3 T33: 0.2767 T12: -0.0243 REMARK 3 T13: -0.0099 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 2.0400 L22: 5.0107 REMARK 3 L33: 1.8469 L12: -3.1465 REMARK 3 L13: -0.4805 L23: 0.9705 REMARK 3 S TENSOR REMARK 3 S11: 0.4068 S12: 0.3684 S13: 0.0256 REMARK 3 S21: -0.6733 S22: -0.4586 S23: 0.1114 REMARK 3 S31: -0.1416 S32: -0.2362 S33: 0.0518 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 359 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4820 4.5530 228.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.1579 REMARK 3 T33: 0.0074 T12: 0.0196 REMARK 3 T13: -0.0308 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.3959 L22: 3.8374 REMARK 3 L33: 1.2839 L12: 1.1679 REMARK 3 L13: -0.0253 L23: -0.2014 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.2504 S13: -0.0093 REMARK 3 S21: -0.3572 S22: 0.0218 S23: 0.1012 REMARK 3 S31: 0.0195 S32: -0.1312 S33: -0.0121 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 264 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7320 34.4800 257.9570 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0618 REMARK 3 T33: 0.1046 T12: -0.0399 REMARK 3 T13: 0.0389 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.9749 L22: 1.7026 REMARK 3 L33: 3.3375 L12: -0.4908 REMARK 3 L13: 0.2913 L23: -0.2969 REMARK 3 S TENSOR REMARK 3 S11: 0.0542 S12: -0.0783 S13: 0.0214 REMARK 3 S21: 0.0050 S22: 0.0573 S23: 0.0042 REMARK 3 S31: -0.0511 S32: 0.0160 S33: -0.1115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4G6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24071 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 85.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : 0.12100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67900 REMARK 200 R SYM FOR SHELL (I) : 0.67900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3RGF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M SODIUM FORMATE, PH REMARK 280 6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.09050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.20850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.47100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.20850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.09050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.47100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 115 REMARK 465 ALA A 116 REMARK 465 ASN A 117 REMARK 465 LYS A 118 REMARK 465 LYS A 119 REMARK 465 PRO A 120 REMARK 465 VAL A 121 REMARK 465 GLN A 122 REMARK 465 LYS A 185 REMARK 465 PRO A 186 REMARK 465 LEU A 187 REMARK 465 ALA A 188 REMARK 465 ASP A 189 REMARK 465 LEU A 190 REMARK 465 ASP A 191 REMARK 465 PRO A 192 REMARK 465 VAL A 193 REMARK 465 VAL A 194 REMARK 465 VAL A 195 REMARK 465 THR A 196 REMARK 465 ASP A 240 REMARK 465 ILE A 241 REMARK 465 LYS A 242 REMARK 465 THR A 243 REMARK 465 SER A 244 REMARK 465 ASN A 245 REMARK 465 THR A 360 REMARK 465 GLU A 361 REMARK 465 GLU A 362 REMARK 465 GLU A 363 REMARK 465 PRO A 364 REMARK 465 ASP A 365 REMARK 465 ASP A 366 REMARK 465 LYS A 367 REMARK 465 GLY A 368 REMARK 465 ASP A 369 REMARK 465 LYS A 370 REMARK 465 LYS A 371 REMARK 465 ASN A 372 REMARK 465 GLN A 373 REMARK 465 GLN A 374 REMARK 465 GLN A 375 REMARK 465 GLN A 376 REMARK 465 GLN A 377 REMARK 465 GLY A 378 REMARK 465 ASN A 379 REMARK 465 ASN A 380 REMARK 465 HIS A 381 REMARK 465 THR A 382 REMARK 465 ASN A 383 REMARK 465 GLY A 384 REMARK 465 THR A 385 REMARK 465 GLY A 386 REMARK 465 HIS A 387 REMARK 465 PRO A 388 REMARK 465 GLY A 389 REMARK 465 ASN A 390 REMARK 465 GLN A 391 REMARK 465 ASP A 392 REMARK 465 SER A 393 REMARK 465 SER A 394 REMARK 465 HIS A 395 REMARK 465 THR A 396 REMARK 465 GLN A 397 REMARK 465 GLY A 398 REMARK 465 PRO A 399 REMARK 465 PRO A 400 REMARK 465 LEU A 401 REMARK 465 LYS A 402 REMARK 465 LYS A 403 REMARK 465 ASN B 265 REMARK 465 SER B 266 REMARK 465 GLU B 267 REMARK 465 GLY B 268 REMARK 465 GLU B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 PRO B 272 REMARK 465 ASN B 273 REMARK 465 GLY B 274 REMARK 465 SER B 275 REMARK 465 GLN B 276 REMARK 465 ASN B 277 REMARK 465 SER B 278 REMARK 465 SER B 279 REMARK 465 TYR B 280 REMARK 465 SER B 281 REMARK 465 GLN B 282 REMARK 465 SER B 283 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A -1 CB CG OD1 OD2 REMARK 480 LYS A 0 CG CD CE NZ REMARK 480 LYS A 6 CE NZ REMARK 480 GLU A 23 CB CG CD OE1 OE2 REMARK 480 LYS A 26 CD CE NZ REMARK 480 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 480 THR A 31 CB OG1 CG2 REMARK 480 TYR A 32 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR A 32 OH REMARK 480 HIS A 34 CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 39 CG CD CE NZ REMARK 480 LYS A 44 CB CG CD CE NZ REMARK 480 LYS A 47 CD CE NZ REMARK 480 GLN A 53 CD OE1 NE2 REMARK 480 GLU A 55 CG CD OE1 OE2 REMARK 480 LYS A 83 CD CE NZ REMARK 480 LYS A 109 CD CE NZ REMARK 480 ARG A 112 CZ NH1 NH2 REMARK 480 LEU A 179 CB CG CD1 CD2 REMARK 480 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 237 CB CG CD NE CZ NH1 NH2 REMARK 480 GLN A 238 CB CG CD OE1 NE2 REMARK 480 GLU A 239 CB CG CD OE1 OE2 REMARK 480 LYS A 265 CG CD CE NZ REMARK 480 LYS A 271 CG CD CE NZ REMARK 480 LYS A 272 CD CE NZ REMARK 480 LYS A 281 CG CD CE NZ REMARK 480 ARG A 284 CZ NH1 NH2 REMARK 480 ASN A 290 CB CG OD1 ND2 REMARK 480 LYS A 299 CE NZ REMARK 480 LYS A 303 CD CE NZ REMARK 480 GLU A 327 CD OE1 OE2 REMARK 480 GLN A 350 CG CD OE1 NE2 REMARK 480 LYS A 355 CG CD CE NZ REMARK 480 GLU A 357 CB CG CD OE1 OE2 REMARK 480 ASP B -2 CB CG OD1 OD2 REMARK 480 LYS B 18 CD CE NZ REMARK 480 GLN B 19 CB CG CD OE1 NE2 REMARK 480 LYS B 23 CG CD CE NZ REMARK 480 LYS B 30 CB CG CD CE NZ REMARK 480 LYS B 56 CG CD CE NZ REMARK 480 VAL B 102 CG1 CG2 REMARK 480 LYS B 117 CG CD CE NZ REMARK 480 LYS B 126 CD CE NZ REMARK 480 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 480 MET B 171 CB CG SD CE REMARK 480 LYS B 211 CG CD CE NZ REMARK 480 GLN B 215 CD OE1 NE2 REMARK 480 LEU B 220 CG CD1 CD2 REMARK 480 SER B 221 CB OG REMARK 480 GLU B 225 CB CG CD OE1 OE2 REMARK 480 LYS B 226 CD CE NZ REMARK 480 LYS B 236 CE NZ REMARK 480 LYS B 248 NZ REMARK 480 LYS B 259 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 22 -24.35 -148.06 REMARK 500 GLU A 23 116.86 -38.86 REMARK 500 TYR A 32 24.50 -162.32 REMARK 500 ARG A 150 -10.69 80.11 REMARK 500 ASP A 151 41.62 -140.66 REMARK 500 TRP A 267 75.69 -151.55 REMARK 500 HIS A 300 34.29 -95.08 REMARK 500 GLU B 219 1.74 -68.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F7S RELATED DB: PDB DBREF 4G6L A 1 403 UNP P49336 CDK8_HUMAN 1 403 DBREF 4G6L B 1 283 UNP P24863 CCNC_HUMAN 1 283 SEQADV 4G6L ASP A -2 UNP P49336 EXPRESSION TAG SEQADV 4G6L ASP A -1 UNP P49336 EXPRESSION TAG SEQADV 4G6L LYS A 0 UNP P49336 EXPRESSION TAG SEQADV 4G6L ASP B -2 UNP P24863 EXPRESSION TAG SEQADV 4G6L LYS B -1 UNP P24863 EXPRESSION TAG SEQADV 4G6L ALA B 0 UNP P24863 EXPRESSION TAG SEQRES 1 A 406 ASP ASP LYS MET ASP TYR ASP PHE LYS VAL LYS LEU SER SEQRES 2 A 406 SER GLU ARG GLU ARG VAL GLU ASP LEU PHE GLU TYR GLU SEQRES 3 A 406 GLY CYS LYS VAL GLY ARG GLY THR TYR GLY HIS VAL TYR SEQRES 4 A 406 LYS ALA LYS ARG LYS ASP GLY LYS ASP ASP LYS ASP TYR SEQRES 5 A 406 ALA LEU LYS GLN ILE GLU GLY THR GLY ILE SER MET SER SEQRES 6 A 406 ALA CYS ARG GLU ILE ALA LEU LEU ARG GLU LEU LYS HIS SEQRES 7 A 406 PRO ASN VAL ILE SER LEU GLN LYS VAL PHE LEU SER HIS SEQRES 8 A 406 ALA ASP ARG LYS VAL TRP LEU LEU PHE ASP TYR ALA GLU SEQRES 9 A 406 HIS ASP LEU TRP HIS ILE ILE LYS PHE HIS ARG ALA SER SEQRES 10 A 406 LYS ALA ASN LYS LYS PRO VAL GLN LEU PRO ARG GLY MET SEQRES 11 A 406 VAL LYS SER LEU LEU TYR GLN ILE LEU ASP GLY ILE HIS SEQRES 12 A 406 TYR LEU HIS ALA ASN TRP VAL LEU HIS ARG ASP LEU LYS SEQRES 13 A 406 PRO ALA ASN ILE LEU VAL MET GLY GLU GLY PRO GLU ARG SEQRES 14 A 406 GLY ARG VAL LYS ILE ALA ASP MET GLY PHE ALA ARG LEU SEQRES 15 A 406 PHE ASN SER PRO LEU LYS PRO LEU ALA ASP LEU ASP PRO SEQRES 16 A 406 VAL VAL VAL THR PHE TRP TYR ARG ALA PRO GLU LEU LEU SEQRES 17 A 406 LEU GLY ALA ARG HIS TYR THR LYS ALA ILE ASP ILE TRP SEQRES 18 A 406 ALA ILE GLY CYS ILE PHE ALA GLU LEU LEU THR SER GLU SEQRES 19 A 406 PRO ILE PHE HIS CYS ARG GLN GLU ASP ILE LYS THR SER SEQRES 20 A 406 ASN PRO TYR HIS HIS ASP GLN LEU ASP ARG ILE PHE ASN SEQRES 21 A 406 VAL MET GLY PHE PRO ALA ASP LYS ASP TRP GLU ASP ILE SEQRES 22 A 406 LYS LYS MET PRO GLU HIS SER THR LEU MET LYS ASP PHE SEQRES 23 A 406 ARG ARG ASN THR TYR THR ASN CYS SER LEU ILE LYS TYR SEQRES 24 A 406 MET GLU LYS HIS LYS VAL LYS PRO ASP SER LYS ALA PHE SEQRES 25 A 406 HIS LEU LEU GLN LYS LEU LEU THR MET ASP PRO ILE LYS SEQRES 26 A 406 ARG ILE THR SER GLU GLN ALA MET GLN ASP PRO TYR PHE SEQRES 27 A 406 LEU GLU ASP PRO LEU PRO THR SER ASP VAL PHE ALA GLY SEQRES 28 A 406 CYS GLN ILE PRO TYR PRO LYS ARG GLU PHE LEU THR GLU SEQRES 29 A 406 GLU GLU PRO ASP ASP LYS GLY ASP LYS LYS ASN GLN GLN SEQRES 30 A 406 GLN GLN GLN GLY ASN ASN HIS THR ASN GLY THR GLY HIS SEQRES 31 A 406 PRO GLY ASN GLN ASP SER SER HIS THR GLN GLY PRO PRO SEQRES 32 A 406 LEU LYS LYS SEQRES 1 B 286 ASP LYS ALA MET ALA GLY ASN PHE TRP GLN SER SER HIS SEQRES 2 B 286 TYR LEU GLN TRP ILE LEU ASP LYS GLN ASP LEU LEU LYS SEQRES 3 B 286 GLU ARG GLN LYS ASP LEU LYS PHE LEU SER GLU GLU GLU SEQRES 4 B 286 TYR TRP LYS LEU GLN ILE PHE PHE THR ASN VAL ILE GLN SEQRES 5 B 286 ALA LEU GLY GLU HIS LEU LYS LEU ARG GLN GLN VAL ILE SEQRES 6 B 286 ALA THR ALA THR VAL TYR PHE LYS ARG PHE TYR ALA ARG SEQRES 7 B 286 TYR SER LEU LYS SER ILE ASP PRO VAL LEU MET ALA PRO SEQRES 8 B 286 THR CYS VAL PHE LEU ALA SER LYS VAL GLU GLU PHE GLY SEQRES 9 B 286 VAL VAL SER ASN THR ARG LEU ILE ALA ALA ALA THR SER SEQRES 10 B 286 VAL LEU LYS THR ARG PHE SER TYR ALA PHE PRO LYS GLU SEQRES 11 B 286 PHE PRO TYR ARG MET ASN HIS ILE LEU GLU CYS GLU PHE SEQRES 12 B 286 TYR LEU LEU GLU LEU MET ASP CYS CYS LEU ILE VAL TYR SEQRES 13 B 286 HIS PRO TYR ARG PRO LEU LEU GLN TYR VAL GLN ASP MET SEQRES 14 B 286 GLY GLN GLU ASP MET LEU LEU PRO LEU ALA TRP ARG ILE SEQRES 15 B 286 VAL ASN ASP THR TYR ARG THR ASP LEU CYS LEU LEU TYR SEQRES 16 B 286 PRO PRO PHE MET ILE ALA LEU ALA CYS LEU HIS VAL ALA SEQRES 17 B 286 CYS VAL VAL GLN GLN LYS ASP ALA ARG GLN TRP PHE ALA SEQRES 18 B 286 GLU LEU SER VAL ASP MET GLU LYS ILE LEU GLU ILE ILE SEQRES 19 B 286 ARG VAL ILE LEU LYS LEU TYR GLU GLN TRP LYS ASN PHE SEQRES 20 B 286 ASP GLU ARG LYS GLU MET ALA THR ILE LEU SER LYS MET SEQRES 21 B 286 PRO LYS PRO LYS PRO PRO PRO ASN SER GLU GLY GLU GLN SEQRES 22 B 286 GLY PRO ASN GLY SER GLN ASN SER SER TYR SER GLN SER HET FMT A 501 3 HETNAM FMT FORMIC ACID FORMUL 3 FMT C H2 O2 FORMUL 4 HOH *40(H2 O) HELIX 1 1 ASP A 2 ARG A 13 1 12 HELIX 2 2 ARG A 15 LEU A 19 1 5 HELIX 3 3 SER A 60 ARG A 71 1 12 HELIX 4 4 LEU A 104 ALA A 113 1 10 HELIX 5 5 PRO A 124 ASN A 145 1 22 HELIX 6 6 LYS A 153 ALA A 155 5 3 HELIX 7 7 ARG A 178 SER A 182 5 5 HELIX 8 8 ALA A 201 LEU A 206 1 6 HELIX 9 9 THR A 212 SER A 230 1 19 HELIX 10 10 HIS A 248 GLY A 260 1 13 HELIX 11 11 TRP A 267 MET A 273 5 7 HELIX 12 12 GLU A 275 PHE A 283 1 9 HELIX 13 13 ARG A 284 THR A 289 5 6 HELIX 14 14 SER A 292 HIS A 300 1 9 HELIX 15 15 SER A 306 LEU A 316 1 11 HELIX 16 16 ASP A 319 ARG A 323 5 5 HELIX 17 17 THR A 325 GLN A 331 1 7 HELIX 18 18 ASP A 332 GLU A 337 5 6 HELIX 19 19 ASN B 4 GLN B 7 5 4 HELIX 20 20 SER B 8 TRP B 14 1 7 HELIX 21 21 ASP B 17 GLN B 26 1 10 HELIX 22 22 LYS B 27 PHE B 31 5 5 HELIX 23 23 SER B 33 LEU B 55 1 23 HELIX 24 24 ARG B 58 TYR B 76 1 19 HELIX 25 25 ASP B 82 GLU B 98 1 17 HELIX 26 26 SER B 104 PHE B 120 1 17 HELIX 27 27 ARG B 131 MET B 146 1 16 HELIX 28 28 PRO B 155 GLY B 167 1 13 HELIX 29 29 GLN B 168 TYR B 184 1 17 HELIX 30 30 ASP B 187 TYR B 192 1 6 HELIX 31 31 PRO B 193 GLN B 210 1 18 HELIX 32 32 ALA B 213 GLU B 219 1 7 HELIX 33 33 ASP B 223 PHE B 244 1 22 HELIX 34 34 ASP B 245 MET B 257 1 13 SHEET 1 A 3 PHE A 20 GLU A 21 0 SHEET 2 A 3 HIS A 34 ARG A 40 -1 O LYS A 39 N GLU A 21 SHEET 3 A 3 LYS A 26 GLY A 28 -1 N VAL A 27 O VAL A 35 SHEET 1 B 5 PHE A 20 GLU A 21 0 SHEET 2 B 5 HIS A 34 ARG A 40 -1 O LYS A 39 N GLU A 21 SHEET 3 B 5 TYR A 49 ILE A 54 -1 O TYR A 49 N ALA A 38 SHEET 4 B 5 LYS A 92 ASP A 98 -1 O PHE A 97 N ALA A 50 SHEET 5 B 5 LEU A 81 SER A 87 -1 N PHE A 85 O TRP A 94 SHEET 1 C 3 HIS A 102 ASP A 103 0 SHEET 2 C 3 ILE A 157 VAL A 159 -1 O VAL A 159 N HIS A 102 SHEET 3 C 3 VAL A 169 ILE A 171 -1 O LYS A 170 N LEU A 158 CISPEP 1 ASP A 338 PRO A 339 0 1.17 SITE 1 AC1 4 ARG A 150 ASP A 151 LEU A 152 ASP A 216 CRYST1 70.181 70.942 170.417 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005868 0.00000