PDB Short entry for 4G83 HEADER DNA BINDING PROTEIN/DNA 20-JUL-12 4G83 TITLE CRYSTAL STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER BOUND TO A FULL TITLE 2 RESPONSE-ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA; COMPND 3 CHAIN: E, F; COMPND 4 FRAGMENT: UNP RESIDUES 115-312; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUMOR PROTEIN P73; COMPND 8 CHAIN: A, B; COMPND 9 SYNONYM: P53-LIKE TRANSCRIPTION FACTOR, P53-RELATED PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: DNA SYNTHESIZED; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN; SOURCE 7 ORGANISM_TAXID: 9606; SOURCE 8 GENE: HUMAN, P73, TP73; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BETA-IMMUNOGLOBULIN FOLD, TUMOR SUPPRESSOR, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.S.ETHAYATHULLA,H.VIADIU REVDAT 4 13-SEP-23 4G83 1 REMARK SEQADV LINK REVDAT 3 17-JUL-19 4G83 1 REMARK REVDAT 2 20-FEB-13 4G83 1 REMARK REVDAT 1 16-JAN-13 4G83 0 JRNL AUTH A.S.ETHAYATHULLA,H.VIADIU JRNL TITL CRYSTAL STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER BOUND JRNL TITL 2 TO A FULL RESPONSE-ELEMENT JRNL REF J.BIOL.CHEM. 2013 JRNL REFN ESSN 1083-351X REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 4349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6125 - 4.0002 1.00 4147 202 0.2414 0.3073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 5.45000 REMARK 3 B33 (A**2) : -5.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.031 3640 REMARK 3 ANGLE : 3.062 5032 REMARK 3 CHIRALITY : 0.100 552 REMARK 3 PLANARITY : 0.014 594 REMARK 3 DIHEDRAL : 20.914 1402 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN E AND RESID 400:409 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7571 -32.7521 9.3385 REMARK 3 T TENSOR REMARK 3 T11: 0.3483 T22: 0.5483 REMARK 3 T33: 0.7995 T12: 0.3152 REMARK 3 T13: -0.0555 T23: 0.5118 REMARK 3 L TENSOR REMARK 3 L11: 2.0375 L22: 2.6688 REMARK 3 L33: 1.8812 L12: -0.6919 REMARK 3 L13: 1.0636 L23: -0.7298 REMARK 3 S TENSOR REMARK 3 S11: -0.2864 S12: -0.0078 S13: 1.4485 REMARK 3 S21: -1.1429 S22: 0.4491 S23: -0.3277 REMARK 3 S31: -0.1134 S32: 0.2876 S33: 0.5764 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN F AND RESID 410:419 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7099 -32.7407 8.0320 REMARK 3 T TENSOR REMARK 3 T11: 1.3344 T22: 0.6077 REMARK 3 T33: 0.5611 T12: 0.1660 REMARK 3 T13: 0.0833 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 5.0660 L22: 1.6489 REMARK 3 L33: 2.5592 L12: -0.4275 REMARK 3 L13: -2.3738 L23: 0.9162 REMARK 3 S TENSOR REMARK 3 S11: -0.5233 S12: 0.4095 S13: -0.5928 REMARK 3 S21: -0.5105 S22: -0.2792 S23: -0.1755 REMARK 3 S31: 1.3492 S32: 0.0305 S33: -0.2566 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4072 -8.0051 13.2438 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.3177 REMARK 3 T33: 0.1433 T12: -0.2570 REMARK 3 T13: -0.1057 T23: -0.0777 REMARK 3 L TENSOR REMARK 3 L11: 2.1680 L22: 8.4996 REMARK 3 L33: 2.8918 L12: 1.1984 REMARK 3 L13: -0.4306 L23: -3.9227 REMARK 3 S TENSOR REMARK 3 S11: -0.5420 S12: 0.2087 S13: -0.4675 REMARK 3 S21: -0.6740 S22: -0.4141 S23: -2.9198 REMARK 3 S31: 0.1813 S32: 0.5368 S33: -0.3165 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 113:310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.4701 -28.0807 3.7272 REMARK 3 T TENSOR REMARK 3 T11: -0.0088 T22: 0.4532 REMARK 3 T33: -1.2789 T12: -0.0335 REMARK 3 T13: -0.4926 T23: -0.1318 REMARK 3 L TENSOR REMARK 3 L11: 3.5469 L22: 7.3234 REMARK 3 L33: 2.9810 L12: -2.5135 REMARK 3 L13: -0.9597 L23: 1.8799 REMARK 3 S TENSOR REMARK 3 S11: -0.1748 S12: -0.4719 S13: -2.0314 REMARK 3 S21: 1.7329 S22: -0.3354 S23: 4.4161 REMARK 3 S31: -0.2336 S32: -0.1539 S33: 0.0291 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4G83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) LIQUID REMARK 200 N2 COOLED REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5072 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BTP, 20% PEG3350 , PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 70.85850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.17400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.17250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 17.17400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.85850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.17250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -34.34800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG E 410 REMARK 465 DA E 411 REMARK 465 DA E 412 REMARK 465 DC E 413 REMARK 465 DC E 414 REMARK 465 DG E 415 REMARK 465 DG E 416 REMARK 465 DT E 417 REMARK 465 DT E 418 REMARK 465 DC E 419 REMARK 465 DG F 420 REMARK 465 DA F 421 REMARK 465 DA F 422 REMARK 465 DC F 423 REMARK 465 DC F 424 REMARK 465 DG F 425 REMARK 465 DG F 426 REMARK 465 DT F 427 REMARK 465 DT F 428 REMARK 465 DC F 429 REMARK 465 MET A 103 REMARK 465 GLY A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 GLU A 311 REMARK 465 GLN A 312 REMARK 465 MET B 103 REMARK 465 GLY B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 GLU B 311 REMARK 465 GLN B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 PHE A 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 PHE B 114 CG CD1 CD2 CE1 CE2 CZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 293 NE REMARK 480 ARG B 293 CD CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 117 NH2 ARG A 287 2.03 REMARK 500 NE2 HIS B 213 OD1 ASP B 227 2.07 REMARK 500 NH2 ARG B 176 OG SER B 235 2.10 REMARK 500 OG SER B 117 NH2 ARG B 287 2.10 REMARK 500 O GLU A 113 NH2 ARG A 233 2.15 REMARK 500 ND1 HIS A 197 SG CYS A 258 2.16 REMARK 500 O CYS B 262 OD1 ASN B 267 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG E 400 O3' DG E 400 C3' -0.047 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 400 O5' - C5' - C4' ANGL. DEV. = -9.8 DEGREES REMARK 500 DG E 400 O4' - C1' - N9 ANGL. DEV. = -7.7 DEGREES REMARK 500 DG E 405 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG E 405 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC E 409 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG F 410 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC F 413 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC F 419 C3' - C2' - C1' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC F 419 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 PRO A 168 C - N - CD ANGL. DEV. = -17.5 DEGREES REMARK 500 PRO A 169 C - N - CD ANGL. DEV. = -22.5 DEGREES REMARK 500 PRO A 243 C - N - CA ANGL. DEV. = -9.5 DEGREES REMARK 500 ARG A 287 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 HIS B 125 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 PHE B 131 CB - CG - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 PRO B 168 C - N - CA ANGL. DEV. = 21.1 DEGREES REMARK 500 PRO B 168 C - N - CD ANGL. DEV. = -19.5 DEGREES REMARK 500 PRO B 169 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 PRO B 170 C - N - CA ANGL. DEV. = -24.6 DEGREES REMARK 500 PRO B 170 C - N - CD ANGL. DEV. = 23.2 DEGREES REMARK 500 PRO B 171 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 GLU B 185 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO B 195 CA - C - N ANGL. DEV. = 13.2 DEGREES REMARK 500 PRO B 243 C - N - CA ANGL. DEV. = -11.9 DEGREES REMARK 500 GLY B 246 N - CA - C ANGL. DEV. = 20.0 DEGREES REMARK 500 THR B 250 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 LEU B 272 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 CYS B 295 CA - CB - SG ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 169 -148.83 55.60 REMARK 500 PHE A 203 17.58 -140.44 REMARK 500 HIS B 126 132.98 -32.18 REMARK 500 VAL B 245 118.88 -32.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 310 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 194 SG REMARK 620 2 HIS A 197 ND1 125.8 REMARK 620 3 CYS A 258 SG 126.0 60.0 REMARK 620 4 CYS A 262 SG 119.3 86.5 114.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 194 SG REMARK 620 2 HIS B 197 ND1 114.9 REMARK 620 3 CYS B 258 SG 109.8 92.4 REMARK 620 4 CYS B 262 SG 94.4 116.8 129.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VD0 RELATED DB: PDB REMARK 900 STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER MODULATES P73 REMARK 900 TRANSACTIVATION REMARK 900 RELATED ID: 3VD1 RELATED DB: PDB REMARK 900 STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER MODULATES P73 REMARK 900 TRANSACTIVATION REMARK 900 RELATED ID: 3VD2 RELATED DB: PDB REMARK 900 STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER MODULATES P73 REMARK 900 TRANSACTIVATION REMARK 900 RELATED ID: 4G82 RELATED DB: PDB DBREF 4G83 A 115 312 UNP O15350 P73_HUMAN 115 312 DBREF 4G83 B 115 312 UNP O15350 P73_HUMAN 115 312 DBREF 4G83 E 400 419 PDB 4G83 4G83 400 419 DBREF 4G83 F 410 429 PDB 4G83 4G83 410 429 SEQADV 4G83 MET A 103 UNP O15350 EXPRESSION TAG SEQADV 4G83 GLY A 104 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS A 105 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS A 106 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS A 107 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS A 108 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS A 109 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS A 110 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS A 111 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS A 112 UNP O15350 EXPRESSION TAG SEQADV 4G83 GLU A 113 UNP O15350 EXPRESSION TAG SEQADV 4G83 PHE A 114 UNP O15350 EXPRESSION TAG SEQADV 4G83 MET B 103 UNP O15350 EXPRESSION TAG SEQADV 4G83 GLY B 104 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS B 105 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS B 106 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS B 107 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS B 108 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS B 109 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS B 110 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS B 111 UNP O15350 EXPRESSION TAG SEQADV 4G83 HIS B 112 UNP O15350 EXPRESSION TAG SEQADV 4G83 GLU B 113 UNP O15350 EXPRESSION TAG SEQADV 4G83 PHE B 114 UNP O15350 EXPRESSION TAG SEQRES 1 E 20 DG DA DA DC DC DG DG DT DT DC DG DA DA SEQRES 2 E 20 DC DC DG DG DT DT DC SEQRES 1 F 20 DG DA DA DC DC DG DG DT DT DC DG DA DA SEQRES 2 F 20 DC DC DG DG DT DT DC SEQRES 1 A 210 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS GLU PHE ILE SEQRES 2 A 210 PRO SER ASN THR ASP TYR PRO GLY PRO HIS HIS PHE GLU SEQRES 3 A 210 VAL THR PHE GLN GLN SER SER THR ALA LYS SER ALA THR SEQRES 4 A 210 TRP THR TYR SER PRO LEU LEU LYS LYS LEU TYR CYS GLN SEQRES 5 A 210 ILE ALA LYS THR CYS PRO ILE GLN ILE LYS VAL SER THR SEQRES 6 A 210 PRO PRO PRO PRO GLY THR ALA ILE ARG ALA MET PRO VAL SEQRES 7 A 210 TYR LYS LYS ALA GLU HIS VAL THR ASP VAL VAL LYS ARG SEQRES 8 A 210 CYS PRO ASN HIS GLU LEU GLY ARG ASP PHE ASN GLU GLY SEQRES 9 A 210 GLN SER ALA PRO ALA SER HIS LEU ILE ARG VAL GLU GLY SEQRES 10 A 210 ASN ASN LEU SER GLN TYR VAL ASP ASP PRO VAL THR GLY SEQRES 11 A 210 ARG GLN SER VAL VAL VAL PRO TYR GLU PRO PRO GLN VAL SEQRES 12 A 210 GLY THR GLU PHE THR THR ILE LEU TYR ASN PHE MET CYS SEQRES 13 A 210 ASN SER SER CYS VAL GLY GLY MET ASN ARG ARG PRO ILE SEQRES 14 A 210 LEU ILE ILE ILE THR LEU GLU MET ARG ASP GLY GLN VAL SEQRES 15 A 210 LEU GLY ARG ARG SER PHE GLU GLY ARG ILE CYS ALA CYS SEQRES 16 A 210 PRO GLY ARG ASP ARG LYS ALA ASP GLU ASP HIS TYR ARG SEQRES 17 A 210 GLU GLN SEQRES 1 B 210 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS GLU PHE ILE SEQRES 2 B 210 PRO SER ASN THR ASP TYR PRO GLY PRO HIS HIS PHE GLU SEQRES 3 B 210 VAL THR PHE GLN GLN SER SER THR ALA LYS SER ALA THR SEQRES 4 B 210 TRP THR TYR SER PRO LEU LEU LYS LYS LEU TYR CYS GLN SEQRES 5 B 210 ILE ALA LYS THR CYS PRO ILE GLN ILE LYS VAL SER THR SEQRES 6 B 210 PRO PRO PRO PRO GLY THR ALA ILE ARG ALA MET PRO VAL SEQRES 7 B 210 TYR LYS LYS ALA GLU HIS VAL THR ASP VAL VAL LYS ARG SEQRES 8 B 210 CYS PRO ASN HIS GLU LEU GLY ARG ASP PHE ASN GLU GLY SEQRES 9 B 210 GLN SER ALA PRO ALA SER HIS LEU ILE ARG VAL GLU GLY SEQRES 10 B 210 ASN ASN LEU SER GLN TYR VAL ASP ASP PRO VAL THR GLY SEQRES 11 B 210 ARG GLN SER VAL VAL VAL PRO TYR GLU PRO PRO GLN VAL SEQRES 12 B 210 GLY THR GLU PHE THR THR ILE LEU TYR ASN PHE MET CYS SEQRES 13 B 210 ASN SER SER CYS VAL GLY GLY MET ASN ARG ARG PRO ILE SEQRES 14 B 210 LEU ILE ILE ILE THR LEU GLU MET ARG ASP GLY GLN VAL SEQRES 15 B 210 LEU GLY ARG ARG SER PHE GLU GLY ARG ILE CYS ALA CYS SEQRES 16 B 210 PRO GLY ARG ASP ARG LYS ALA ASP GLU ASP HIS TYR ARG SEQRES 17 B 210 GLU GLN HET ZN A 401 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) HELIX 1 1 LYS A 183 VAL A 187 5 5 HELIX 2 2 CYS A 194 GLY A 200 1 7 HELIX 3 3 CYS A 297 ARG A 310 1 14 HELIX 4 4 LYS B 183 VAL B 187 5 5 HELIX 5 5 CYS B 194 LEU B 199 1 6 HELIX 6 6 CYS B 297 ARG B 310 1 14 SHEET 1 A 4 GLU A 128 THR A 130 0 SHEET 2 A 4 CYS A 159 LYS A 164 -1 O GLN A 162 N THR A 130 SHEET 3 A 4 THR A 251 PHE A 256 -1 O TYR A 254 N CYS A 159 SHEET 4 A 4 ILE A 215 GLU A 218 -1 N GLU A 218 O LEU A 253 SHEET 1 B 7 TRP A 142 SER A 145 0 SHEET 2 B 7 LYS A 150 CYS A 153 -1 O TYR A 152 N THR A 143 SHEET 3 B 7 VAL A 284 ILE A 294 1 O ARG A 293 N LEU A 151 SHEET 4 B 7 ILE A 271 GLU A 278 -1 N ILE A 271 O GLY A 292 SHEET 5 B 7 ALA A 174 TYR A 181 -1 N ARG A 176 O THR A 276 SHEET 6 B 7 GLN A 234 PRO A 239 -1 O VAL A 238 N ILE A 175 SHEET 7 B 7 GLN A 224 ASP A 227 -1 N GLN A 224 O VAL A 237 SHEET 1 C 4 GLU B 128 THR B 130 0 SHEET 2 C 4 THR B 158 LYS B 164 -1 O LYS B 164 N GLU B 128 SHEET 3 C 4 THR B 251 PHE B 256 -1 O ILE B 252 N ILE B 161 SHEET 4 C 4 ILE B 215 VAL B 217 -1 N ARG B 216 O ASN B 255 SHEET 1 D 7 TRP B 142 SER B 145 0 SHEET 2 D 7 LYS B 150 CYS B 153 -1 O LYS B 150 N SER B 145 SHEET 3 D 7 VAL B 284 ILE B 294 1 O ARG B 293 N LEU B 151 SHEET 4 D 7 ILE B 271 GLU B 278 -1 N LEU B 277 O GLY B 286 SHEET 5 D 7 ALA B 174 TYR B 181 -1 N ALA B 174 O GLU B 278 SHEET 6 D 7 GLN B 234 PRO B 239 -1 O VAL B 236 N ALA B 177 SHEET 7 D 7 GLN B 224 ASP B 227 -1 N VAL B 226 O SER B 235 LINK SG CYS A 194 ZN ZN A 401 1555 1555 2.31 LINK ND1 HIS A 197 ZN ZN A 401 1555 1555 2.00 LINK SG CYS A 258 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 262 ZN ZN A 401 1555 1555 2.30 LINK SG CYS B 194 ZN ZN B 401 1555 1555 2.31 LINK ND1 HIS B 197 ZN ZN B 401 1555 1555 2.05 LINK SG CYS B 258 ZN ZN B 401 1555 1555 2.31 LINK SG CYS B 262 ZN ZN B 401 1555 1555 2.30 CISPEP 1 PRO A 169 PRO A 170 0 -3.86 SITE 1 AC1 4 CYS A 194 HIS A 197 CYS A 258 CYS A 262 SITE 1 AC2 4 CYS B 194 HIS B 197 CYS B 258 CYS B 262 CRYST1 141.717 96.345 34.348 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007056 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029114 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.583392 -0.811872 0.022757 -62.88351 1 MTRIX2 2 -0.810884 0.583813 0.040357 -33.21291 1 MTRIX3 2 -0.046051 0.005091 -0.998926 16.33878 1