PDB Short entry for 4G8R HEADER BLOOD CLOTTING/INHIBITOR 23-JUL-12 4G8R TITLE CRYSTAL STRUCTURE OF A NOVEL SMALL MOLECULE INACTIVATOR BOUND TO TITLE 2 PLASMINOGEN ACTIVATOR INHIBITOR-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN ACTIVATOR INHIBITOR-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 28-402; COMPND 5 SYNONYM: PAI, PAI-1, ENDOTHELIAL PLASMINOGEN ACTIVATOR INHIBITOR, COMPND 6 SERPIN E1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAI-1, PAI1, PLANH1, SERPINE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: CRE/LOXP KEYWDS SERPIN, PAI-1, INHIBITOR, BLOOD CLOTTING, BLOOD CLOTTING-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.STUCKEY,D.A.LAWRENCE,S.-H.LI REVDAT 3 15-NOV-17 4G8R 1 REMARK REVDAT 2 01-JAN-14 4G8R 1 JRNL REVDAT 1 25-DEC-13 4G8R 0 JRNL AUTH S.H.LI,A.A.REINKE,K.L.SANDERS,C.D.EMAL,J.C.WHISSTOCK, JRNL AUTH 2 J.A.STUCKEY,D.A.LAWRENCE JRNL TITL MECHANISTIC CHARACTERIZATION AND CRYSTAL STRUCTURE OF A JRNL TITL 2 SMALL MOLECULE INACTIVATOR BOUND TO PLASMINOGEN ACTIVATOR JRNL TITL 3 INHIBITOR-1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E4941 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 24297881 JRNL DOI 10.1073/PNAS.1216499110 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 42703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2157 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2851 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1991 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2703 REMARK 3 BIN R VALUE (WORKING SET) : 0.1952 REMARK 3 BIN FREE R VALUE : 0.2798 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.19 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.43980 REMARK 3 B22 (A**2) : 2.72360 REMARK 3 B33 (A**2) : -10.16340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.46950 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.221 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5974 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8119 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2730 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 134 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 920 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5974 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 767 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6797 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.67 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|6 - 379} REMARK 3 ORIGIN FOR THE GROUP (A): -2.4621 -0.0333 28.7544 REMARK 3 T TENSOR REMARK 3 T11: -0.1057 T22: -0.0790 REMARK 3 T33: -0.0385 T12: -0.0225 REMARK 3 T13: 0.0104 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.1952 L22: 1.1083 REMARK 3 L33: 0.7638 L12: 0.1574 REMARK 3 L13: 0.0584 L23: -0.3250 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: -0.0597 S13: 0.1455 REMARK 3 S21: -0.0155 S22: -0.0462 S23: -0.0140 REMARK 3 S31: -0.0150 S32: 0.0091 S33: 0.0119 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|4 - 379} REMARK 3 ORIGIN FOR THE GROUP (A): -33.2754 -21.9582 18.4847 REMARK 3 T TENSOR REMARK 3 T11: -0.0709 T22: -0.0730 REMARK 3 T33: -0.0511 T12: -0.0270 REMARK 3 T13: -0.0110 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.9279 L22: 0.8941 REMARK 3 L33: 1.1133 L12: 0.3212 REMARK 3 L13: -0.2146 L23: -0.5961 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.0311 S13: -0.0152 REMARK 3 S21: -0.0515 S22: -0.0340 S23: 0.0186 REMARK 3 S31: 0.0167 S32: -0.0084 S33: 0.0325 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42733 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.99 - 1.54 M AMMONIUM SULFATE, 200 MM REMARK 280 NACL AND 100 MM NA CACODYLATE PH 6.5 - 6.8., VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.48150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.75200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.48150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.75200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 332 REMARK 465 THR A 333 REMARK 465 VAL A 334 REMARK 465 ALA A 335 REMARK 465 SER A 336 REMARK 465 SER A 337 REMARK 465 SER A 338 REMARK 465 THR A 339 REMARK 465 ALA A 340 REMARK 465 VAL A 341 REMARK 465 ILE A 342 REMARK 465 VAL A 343 REMARK 465 SER A 344 REMARK 465 ALA A 345 REMARK 465 ARG A 346 REMARK 465 MET A 347 REMARK 465 ALA A 348 REMARK 465 GLY B 332 REMARK 465 THR B 333 REMARK 465 VAL B 334 REMARK 465 ALA B 335 REMARK 465 SER B 336 REMARK 465 SER B 337 REMARK 465 SER B 338 REMARK 465 THR B 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 TYR B 220 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 242 CG CD OE1 OE2 REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 GLU B 244 CG CD OE1 OE2 REMARK 470 GLU B 281 CG CD OE1 OE2 REMARK 470 GLU B 350 CG CD OE1 OE2 REMARK 470 ARG B 356 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER A 6 O HOH A 500 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 312 -61.91 -105.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 96P B 402 REMARK 615 96P B 403 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 96P B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 96P B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B3K RELATED DB: PDB REMARK 900 THE ACTIVE CONFORMATION OF PLASMINOGEN ACTIVATOR INHIBITOR 1 REMARK 900 RELATED ID: 4G8O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A NOVEL SMALL MOLECULE INACTIVATOR BOUND TO REMARK 900 PLASMINOGEN ACTIVATOR INHIBITOR-1 DBREF 4G8R A 5 379 UNP P05121 PAI1_HUMAN 28 402 DBREF 4G8R B 5 379 UNP P05121 PAI1_HUMAN 28 402 SEQADV 4G8R ALA A 4 UNP P05121 EXPRESSION TAG SEQADV 4G8R HIS A 150 UNP P05121 ASN 173 ENGINEERED MUTATION SEQADV 4G8R THR A 154 UNP P05121 LYS 177 ENGINEERED MUTATION SEQADV 4G8R LEU A 319 UNP P05121 GLN 342 ENGINEERED MUTATION SEQADV 4G8R ILE A 354 UNP P05121 MET 377 ENGINEERED MUTATION SEQADV 4G8R ALA B 4 UNP P05121 EXPRESSION TAG SEQADV 4G8R HIS B 150 UNP P05121 ASN 173 ENGINEERED MUTATION SEQADV 4G8R THR B 154 UNP P05121 LYS 177 ENGINEERED MUTATION SEQADV 4G8R LEU B 319 UNP P05121 GLN 342 ENGINEERED MUTATION SEQADV 4G8R ILE B 354 UNP P05121 MET 377 ENGINEERED MUTATION SEQRES 1 A 376 ALA PRO SER TYR VAL ALA HIS LEU ALA SER ASP PHE GLY SEQRES 2 A 376 VAL ARG VAL PHE GLN GLN VAL ALA GLN ALA SER LYS ASP SEQRES 3 A 376 ARG ASN VAL VAL PHE SER PRO TYR GLY VAL ALA SER VAL SEQRES 4 A 376 LEU ALA MET LEU GLN LEU THR THR GLY GLY GLU THR GLN SEQRES 5 A 376 GLN GLN ILE GLN ALA ALA MET GLY PHE LYS ILE ASP ASP SEQRES 6 A 376 LYS GLY MET ALA PRO ALA LEU ARG HIS LEU TYR LYS GLU SEQRES 7 A 376 LEU MET GLY PRO TRP ASN LYS ASP GLU ILE SER THR THR SEQRES 8 A 376 ASP ALA ILE PHE VAL GLN ARG ASP LEU LYS LEU VAL GLN SEQRES 9 A 376 GLY PHE MET PRO HIS PHE PHE ARG LEU PHE ARG SER THR SEQRES 10 A 376 VAL LYS GLN VAL ASP PHE SER GLU VAL GLU ARG ALA ARG SEQRES 11 A 376 PHE ILE ILE ASN ASP TRP VAL LYS THR HIS THR LYS GLY SEQRES 12 A 376 MET ILE SER HIS LEU LEU GLY THR GLY ALA VAL ASP GLN SEQRES 13 A 376 LEU THR ARG LEU VAL LEU VAL ASN ALA LEU TYR PHE ASN SEQRES 14 A 376 GLY GLN TRP LYS THR PRO PHE PRO ASP SER SER THR HIS SEQRES 15 A 376 ARG ARG LEU PHE HIS LYS SER ASP GLY SER THR VAL SER SEQRES 16 A 376 VAL PRO MET MET ALA GLN THR ASN LYS PHE ASN TYR THR SEQRES 17 A 376 GLU PHE THR THR PRO ASP GLY HIS TYR TYR ASP ILE LEU SEQRES 18 A 376 GLU LEU PRO TYR HIS GLY ASP THR LEU SER MET PHE ILE SEQRES 19 A 376 ALA ALA PRO TYR GLU LYS GLU VAL PRO LEU SER ALA LEU SEQRES 20 A 376 THR ASN ILE LEU SER ALA GLN LEU ILE SER HIS TRP LYS SEQRES 21 A 376 GLY ASN MET THR ARG LEU PRO ARG LEU LEU VAL LEU PRO SEQRES 22 A 376 LYS PHE SER LEU GLU THR GLU VAL ASP LEU ARG LYS PRO SEQRES 23 A 376 LEU GLU ASN LEU GLY MET THR ASP MET PHE ARG GLN PHE SEQRES 24 A 376 GLN ALA ASP PHE THR SER LEU SER ASP GLN GLU PRO LEU SEQRES 25 A 376 HIS VAL ALA LEU ALA LEU GLN LYS VAL LYS ILE GLU VAL SEQRES 26 A 376 ASN GLU SER GLY THR VAL ALA SER SER SER THR ALA VAL SEQRES 27 A 376 ILE VAL SER ALA ARG MET ALA PRO GLU GLU ILE ILE ILE SEQRES 28 A 376 ASP ARG PRO PHE LEU PHE VAL VAL ARG HIS ASN PRO THR SEQRES 29 A 376 GLY THR VAL LEU PHE MET GLY GLN VAL MET GLU PRO SEQRES 1 B 376 ALA PRO SER TYR VAL ALA HIS LEU ALA SER ASP PHE GLY SEQRES 2 B 376 VAL ARG VAL PHE GLN GLN VAL ALA GLN ALA SER LYS ASP SEQRES 3 B 376 ARG ASN VAL VAL PHE SER PRO TYR GLY VAL ALA SER VAL SEQRES 4 B 376 LEU ALA MET LEU GLN LEU THR THR GLY GLY GLU THR GLN SEQRES 5 B 376 GLN GLN ILE GLN ALA ALA MET GLY PHE LYS ILE ASP ASP SEQRES 6 B 376 LYS GLY MET ALA PRO ALA LEU ARG HIS LEU TYR LYS GLU SEQRES 7 B 376 LEU MET GLY PRO TRP ASN LYS ASP GLU ILE SER THR THR SEQRES 8 B 376 ASP ALA ILE PHE VAL GLN ARG ASP LEU LYS LEU VAL GLN SEQRES 9 B 376 GLY PHE MET PRO HIS PHE PHE ARG LEU PHE ARG SER THR SEQRES 10 B 376 VAL LYS GLN VAL ASP PHE SER GLU VAL GLU ARG ALA ARG SEQRES 11 B 376 PHE ILE ILE ASN ASP TRP VAL LYS THR HIS THR LYS GLY SEQRES 12 B 376 MET ILE SER HIS LEU LEU GLY THR GLY ALA VAL ASP GLN SEQRES 13 B 376 LEU THR ARG LEU VAL LEU VAL ASN ALA LEU TYR PHE ASN SEQRES 14 B 376 GLY GLN TRP LYS THR PRO PHE PRO ASP SER SER THR HIS SEQRES 15 B 376 ARG ARG LEU PHE HIS LYS SER ASP GLY SER THR VAL SER SEQRES 16 B 376 VAL PRO MET MET ALA GLN THR ASN LYS PHE ASN TYR THR SEQRES 17 B 376 GLU PHE THR THR PRO ASP GLY HIS TYR TYR ASP ILE LEU SEQRES 18 B 376 GLU LEU PRO TYR HIS GLY ASP THR LEU SER MET PHE ILE SEQRES 19 B 376 ALA ALA PRO TYR GLU LYS GLU VAL PRO LEU SER ALA LEU SEQRES 20 B 376 THR ASN ILE LEU SER ALA GLN LEU ILE SER HIS TRP LYS SEQRES 21 B 376 GLY ASN MET THR ARG LEU PRO ARG LEU LEU VAL LEU PRO SEQRES 22 B 376 LYS PHE SER LEU GLU THR GLU VAL ASP LEU ARG LYS PRO SEQRES 23 B 376 LEU GLU ASN LEU GLY MET THR ASP MET PHE ARG GLN PHE SEQRES 24 B 376 GLN ALA ASP PHE THR SER LEU SER ASP GLN GLU PRO LEU SEQRES 25 B 376 HIS VAL ALA LEU ALA LEU GLN LYS VAL LYS ILE GLU VAL SEQRES 26 B 376 ASN GLU SER GLY THR VAL ALA SER SER SER THR ALA VAL SEQRES 27 B 376 ILE VAL SER ALA ARG MET ALA PRO GLU GLU ILE ILE ILE SEQRES 28 B 376 ASP ARG PRO PHE LEU PHE VAL VAL ARG HIS ASN PRO THR SEQRES 29 B 376 GLY THR VAL LEU PHE MET GLY GLN VAL MET GLU PRO HET SO4 B 401 5 HET 96P B 402 41 HET 96P B 403 41 HETNAM SO4 SULFATE ION HETNAM 96P (2S)-3-({[3-(TRIFLUOROMETHYL)PHENOXY]CARBONYL}AMINO) HETNAM 2 96P PROPANE-1,2-DIYL BIS(3,4,5-TRIHYDROXYBENZOATE) FORMUL 3 SO4 O4 S 2- FORMUL 4 96P 2(C25 H20 F3 N O12) FORMUL 6 HOH *224(H2 O) HELIX 1 1 SER A 6 SER A 27 1 22 HELIX 2 2 SER A 35 LEU A 48 1 14 HELIX 3 3 GLY A 51 GLY A 63 1 13 HELIX 4 4 GLY A 70 MET A 83 1 14 HELIX 5 5 GLY A 108 ARG A 118 1 11 HELIX 6 6 GLU A 128 THR A 144 1 17 HELIX 7 7 LEU A 152 VAL A 157 5 6 HELIX 8 8 PRO A 180 THR A 184 5 5 HELIX 9 9 HIS A 229 ASP A 231 5 3 HELIX 10 10 LEU A 247 ASN A 252 1 6 HELIX 11 11 SER A 255 ASN A 265 1 11 HELIX 12 12 LEU A 286 LEU A 293 1 8 HELIX 13 13 THR A 296 ARG A 300 5 5 HELIX 14 14 PRO B 5 ALA B 26 1 22 HELIX 15 15 SER B 35 LEU B 48 1 14 HELIX 16 16 GLY B 51 GLY B 63 1 13 HELIX 17 17 GLY B 70 MET B 83 1 14 HELIX 18 18 GLY B 108 ARG B 118 1 11 HELIX 19 19 GLU B 128 THR B 144 1 17 HELIX 20 20 LEU B 151 VAL B 157 5 7 HELIX 21 21 PRO B 180 THR B 184 5 5 HELIX 22 22 HIS B 229 ASP B 231 5 3 HELIX 23 23 LEU B 247 ASN B 252 1 6 HELIX 24 24 SER B 255 MET B 266 1 12 HELIX 25 25 LEU B 286 LEU B 293 1 8 HELIX 26 26 THR B 296 ARG B 300 5 5 SHEET 1 A 7 VAL A 32 PHE A 34 0 SHEET 2 A 7 THR A 369 VAL A 376 -1 O MET A 373 N PHE A 34 SHEET 3 A 7 PHE A 358 HIS A 364 -1 N HIS A 364 O THR A 369 SHEET 4 A 7 LEU A 233 PRO A 240 -1 N PHE A 236 O VAL A 361 SHEET 5 A 7 TYR A 220 PRO A 227 -1 N LEU A 226 O MET A 235 SHEET 6 A 7 THR A 196 THR A 214 -1 N THR A 211 O ILE A 223 SHEET 7 A 7 HIS A 185 HIS A 190 -1 N PHE A 189 O VAL A 197 SHEET 1 B 8 VAL A 32 PHE A 34 0 SHEET 2 B 8 THR A 369 VAL A 376 -1 O MET A 373 N PHE A 34 SHEET 3 B 8 PHE A 358 HIS A 364 -1 N HIS A 364 O THR A 369 SHEET 4 B 8 LEU A 233 PRO A 240 -1 N PHE A 236 O VAL A 361 SHEET 5 B 8 TYR A 220 PRO A 227 -1 N LEU A 226 O MET A 235 SHEET 6 B 8 THR A 196 THR A 214 -1 N THR A 211 O ILE A 223 SHEET 7 B 8 THR A 267 PRO A 276 -1 O LEU A 273 N GLN A 204 SHEET 8 B 8 GLU A 351 ILE A 353 1 O ILE A 352 N LEU A 272 SHEET 1 C 5 LYS A 122 VAL A 124 0 SHEET 2 C 5 ILE A 91 GLN A 100 1 N VAL A 99 O LYS A 122 SHEET 3 C 5 LEU A 163 ASN A 172 -1 O VAL A 166 N ALA A 96 SHEET 4 C 5 LEU A 319 VAL A 328 1 O LEU A 319 N LEU A 165 SHEET 5 C 5 PHE A 278 ASP A 285 -1 N PHE A 278 O VAL A 328 SHEET 1 D 7 VAL B 32 PHE B 34 0 SHEET 2 D 7 THR B 369 VAL B 376 -1 O MET B 373 N PHE B 34 SHEET 3 D 7 PHE B 358 HIS B 364 -1 N PHE B 358 O VAL B 376 SHEET 4 D 7 LEU B 233 PRO B 240 -1 N PHE B 236 O VAL B 361 SHEET 5 D 7 TYR B 220 PRO B 227 -1 N LEU B 226 O MET B 235 SHEET 6 D 7 THR B 196 THR B 214 -1 N PHE B 213 O TYR B 221 SHEET 7 D 7 HIS B 185 HIS B 190 -1 N PHE B 189 O VAL B 197 SHEET 1 E 8 VAL B 32 PHE B 34 0 SHEET 2 E 8 THR B 369 VAL B 376 -1 O MET B 373 N PHE B 34 SHEET 3 E 8 PHE B 358 HIS B 364 -1 N PHE B 358 O VAL B 376 SHEET 4 E 8 LEU B 233 PRO B 240 -1 N PHE B 236 O VAL B 361 SHEET 5 E 8 TYR B 220 PRO B 227 -1 N LEU B 226 O MET B 235 SHEET 6 E 8 THR B 196 THR B 214 -1 N PHE B 213 O TYR B 221 SHEET 7 E 8 THR B 267 PRO B 276 -1 O LEU B 273 N GLN B 204 SHEET 8 E 8 GLU B 350 ILE B 353 1 O ILE B 352 N LEU B 272 SHEET 1 F 5 LYS B 122 VAL B 124 0 SHEET 2 F 5 ILE B 91 GLN B 100 1 N VAL B 99 O LYS B 122 SHEET 3 F 5 LEU B 163 ASN B 172 -1 O VAL B 164 N PHE B 98 SHEET 4 F 5 LEU B 319 VAL B 328 1 O LEU B 319 N LEU B 165 SHEET 5 F 5 PHE B 278 ASP B 285 -1 N VAL B 284 O GLN B 322 CISPEP 1 ALA B 340 VAL B 341 0 -2.82 SITE 1 AC1 5 HIS A 10 SER B 119 THR B 120 LYS B 122 SITE 2 AC1 5 TRP B 139 SITE 1 AC2 11 PRO A 111 PHE A 114 ARG A 115 ARG A 118 SITE 2 AC2 11 ARG A 131 PHE A 134 ILE A 135 ASP A 138 SITE 3 AC2 11 SER B 6 TYR B 7 HIS B 10 SITE 1 AC3 13 HIS A 10 GLN A 257 SER A 260 HIS A 261 SITE 2 AC3 13 SER B 41 MET B 45 LEU B 75 ARG B 76 SITE 3 AC3 13 TYR B 79 ASP B 95 PHE B 117 ARG B 118 SITE 4 AC3 13 HOH B 594 CRYST1 134.963 65.504 96.990 90.00 100.62 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007409 0.000000 0.001389 0.00000 SCALE2 0.000000 0.015266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010490 0.00000