PDB Short entry for 4GRV HEADER SIGNALING PROTEIN/AGONIST 27-AUG-12 4GRV TITLE THE CRYSTAL STRUCTURE OF THE NEUROTENSIN RECEPTOR NTS1 IN COMPLEX WITH TITLE 2 NEUROTENSIN (8-13) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROTENSIN RECEPTOR TYPE 1, LYSOZYME CHIMERA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 SYNONYM: NT-R-1, NTR1, HIGH-AFFINITY LEVOCABASTINE-INSENSITIVE COMPND 6 NEUROTENSIN RECEPTOR, NTRH; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NEUROTENSIN 8-13; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: RAT, BACTERIAPHAGE T4; SOURCE 4 ORGANISM_TAXID: 10116, 10665; SOURCE 5 GENE: NTSR1, NTSR, E; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS G-PROTEIN COUPLED RECEPTOR, NEUROTENSIN RECEPTOR, G-PROTEIN, KEYWDS 2 SIGNALING PROTEIN-AGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.NOINAJ,J.F.WHITE,Y.SHIBATA,J.LOVE,B.KLOSS,F.XU,J.GVOZDENOVIC- AUTHOR 2 JEREMIC,P.SHAH,J.SHILOACH,C.G.TATE,R.GRISSHAMMER REVDAT 5 13-SEP-23 4GRV 1 REMARK SEQADV REVDAT 4 09-AUG-17 4GRV 1 SOURCE REMARK REVDAT 3 07-NOV-12 4GRV 1 JRNL REVDAT 2 31-OCT-12 4GRV 1 HELIX JRNL REVDAT 1 17-OCT-12 4GRV 0 JRNL AUTH J.F.WHITE,N.NOINAJ,Y.SHIBATA,J.LOVE,B.KLOSS,F.XU, JRNL AUTH 2 J.GVOZDENOVIC-JEREMIC,P.SHAH,J.SHILOACH,C.G.TATE, JRNL AUTH 3 R.GRISSHAMMER JRNL TITL STRUCTURE OF THE AGONIST-BOUND NEUROTENSIN RECEPTOR. JRNL REF NATURE V. 490 508 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 23051748 JRNL DOI 10.1038/NATURE11558 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1042) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9579 - 4.7498 0.97 3053 151 0.1805 0.2108 REMARK 3 2 4.7498 - 3.7903 0.97 2968 164 0.1962 0.2672 REMARK 3 3 3.7903 - 3.3171 0.94 2864 140 0.2606 0.3319 REMARK 3 4 3.3171 - 3.0165 0.90 2762 151 0.3018 0.4070 REMARK 3 5 3.0165 - 2.8020 0.83 2485 157 0.3543 0.3899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3602 REMARK 3 ANGLE : 1.014 4921 REMARK 3 CHIRALITY : 0.073 591 REMARK 3 PLANARITY : 0.004 605 REMARK 3 DIHEDRAL : 16.221 1221 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.2333 -14.0671 47.9021 REMARK 3 T TENSOR REMARK 3 T11: 0.6765 T22: 0.5944 REMARK 3 T33: 0.5018 T12: 0.0167 REMARK 3 T13: 0.1216 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.7873 L22: 2.2391 REMARK 3 L33: 1.5953 L12: -0.0656 REMARK 3 L13: 0.9775 L23: -1.1605 REMARK 3 S TENSOR REMARK 3 S11: -0.0689 S12: 0.0684 S13: -0.0707 REMARK 3 S21: -0.0429 S22: -0.0986 S23: -0.1094 REMARK 3 S31: 0.0727 S32: 0.3036 S33: 0.1757 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.9221 -9.7037 51.6099 REMARK 3 T TENSOR REMARK 3 T11: 0.7330 T22: 0.5029 REMARK 3 T33: 0.6387 T12: 0.1519 REMARK 3 T13: 0.1379 T23: 0.0760 REMARK 3 L TENSOR REMARK 3 L11: 3.3118 L22: 2.3505 REMARK 3 L33: 2.1480 L12: 1.2742 REMARK 3 L13: 1.3928 L23: 0.0200 REMARK 3 S TENSOR REMARK 3 S11: -0.1933 S12: -0.1501 S13: -0.4726 REMARK 3 S21: -0.1550 S22: 0.2773 S23: -0.2752 REMARK 3 S31: 0.3720 S32: 0.1788 S33: 0.0445 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 374 THROUGH 1165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.0939 -1.5414 7.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.6510 T22: 0.5059 REMARK 3 T33: 0.6211 T12: -0.0959 REMARK 3 T13: 0.1465 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 3.8523 L22: 7.7443 REMARK 3 L33: 5.4230 L12: -1.6180 REMARK 3 L13: -1.0516 L23: 1.9091 REMARK 3 S TENSOR REMARK 3 S11: 0.0923 S12: 0.2188 S13: -0.0571 REMARK 3 S21: 0.2112 S22: 0.0600 S23: 0.3175 REMARK 3 S31: 0.0512 S32: -0.3552 S33: -0.2633 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.4572 -11.7612 70.2388 REMARK 3 T TENSOR REMARK 3 T11: 1.3877 T22: 1.0552 REMARK 3 T33: 0.5178 T12: -0.0128 REMARK 3 T13: -0.0365 T23: 0.0875 REMARK 3 L TENSOR REMARK 3 L11: 2.0157 L22: 2.0035 REMARK 3 L33: 2.0081 L12: 0.5601 REMARK 3 L13: -4.0726 L23: 1.9994 REMARK 3 S TENSOR REMARK 3 S11: -0.2402 S12: -1.5810 S13: -0.3790 REMARK 3 S21: -0.2753 S22: -0.4613 S23: -0.9826 REMARK 3 S31: -1.5535 S32: -0.5750 S33: 0.4949 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (PHENIX) REMARK 200 STARTING MODEL: 3NY9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80 MM HEPES PH 7.0, 2 MM TCEP, 43 MM REMARK 280 NAK TARTRATE, 20.8% PEG400, LIPID CUBIC PHASE (LCP), TEMPERATURE REMARK 280 298K, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.80950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 33 REMARK 465 TYR A 34 REMARK 465 LYS A 35 REMARK 465 ASP A 36 REMARK 465 ASP A 37 REMARK 465 ASP A 38 REMARK 465 ASP A 39 REMARK 465 ALA A 40 REMARK 465 THR A 41 REMARK 465 SER A 42 REMARK 465 THR A 43 REMARK 465 SER A 44 REMARK 465 GLU A 45 REMARK 465 SER A 46 REMARK 465 ASP A 47 REMARK 465 THR A 48 REMARK 465 ALA A 49 REMARK 465 GLY A 50 REMARK 465 PRO A 51 REMARK 465 LYS A 93 REMARK 465 SER A 94 REMARK 465 LEU A 95 REMARK 465 GLN A 96 REMARK 465 ALA A 1049 REMARK 465 ILE A 1050 REMARK 465 GLY A 1051 REMARK 465 PHE A 380 REMARK 465 LEU A 381 REMARK 465 SER A 382 REMARK 465 THR A 383 REMARK 465 LEU A 384 REMARK 465 ALA A 385 REMARK 465 CYS A 386 REMARK 465 LEU A 387 REMARK 465 CYS A 388 REMARK 465 PRO A 389 REMARK 465 GLY A 390 REMARK 465 TRP A 391 REMARK 465 ARG A 392 REMARK 465 HIS A 393 REMARK 465 ARG A 394 REMARK 465 ARG A 395 REMARK 465 LYS A 396 REMARK 465 ALA A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 GLY A 408 REMARK 465 GLY A 409 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 52 CG OD1 ND2 REMARK 470 ASN A 58 CG OD1 ND2 REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 SER A 97 OG REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 MET A 181 CG SD CE REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ASP A 230 CG OD1 OD2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 GLU A1005 CG CD OE1 OE2 REMARK 470 ARG A1014 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1016 CG CD CE NZ REMARK 470 GLU A1022 CG CD OE1 OE2 REMARK 470 THR A1034 OG1 CG2 REMARK 470 LYS A1035 CG CD CE NZ REMARK 470 SER A1036 OG REMARK 470 SER A1038 OG REMARK 470 LEU A1039 CG CD1 CD2 REMARK 470 LYS A1043 CG CD CE NZ REMARK 470 GLU A1045 CG CD OE1 OE2 REMARK 470 LYS A1048 CG CD CE NZ REMARK 470 THR A1054 OG1 CG2 REMARK 470 ASP A1061 CG OD1 OD2 REMARK 470 LYS A1065 CG CD CE NZ REMARK 470 LYS A1083 CG CD CE NZ REMARK 470 ASP A1089 CG OD1 OD2 REMARK 470 GLU A1108 CG CD OE1 OE2 REMARK 470 GLU A1128 CG CD OE1 OE2 REMARK 470 SER A1136 OG REMARK 470 ARG A1137 CG CD NE CZ NH1 NH2 REMARK 470 TRP A1138 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A1138 CZ3 CH2 REMARK 470 GLN A1141 CG CD OE1 NE2 REMARK 470 LYS A1147 CG CD CE NZ REMARK 470 ASP A1159 CG OD1 OD2 REMARK 470 SER A 335 OG REMARK 470 GLN A 338 CG CD OE1 NE2 REMARK 470 ASP A 345 CG OD1 OD2 REMARK 470 ARG A 377 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 1092 O HOH A 721 2.16 REMARK 500 CB SER A 335 NH1 ARG B 9 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A1136 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 ARG A1137 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 58 58.98 -103.77 REMARK 500 ALA A 90 40.57 -100.55 REMARK 500 TRP A 130 -68.96 -104.60 REMARK 500 LYS A 178 -75.35 -49.79 REMARK 500 LEU A 180 -67.17 -90.71 REMARK 500 PHE A 246 -61.13 -136.76 REMARK 500 SER A 254 -70.69 -52.50 REMARK 500 ASN A1002 26.30 -71.79 REMARK 500 LEU A1015 31.48 -96.93 REMARK 500 THR A1034 59.33 39.53 REMARK 500 SER A1038 -143.98 -130.70 REMARK 500 LEU A1039 -2.62 -54.78 REMARK 500 ASN A1040 -60.93 -93.87 REMARK 500 LEU A1046 82.47 -66.75 REMARK 500 ASP A1092 -100.44 -93.24 REMARK 500 ALA A1093 -28.04 -144.65 REMARK 500 TRP A1138 -17.04 61.07 REMARK 500 ASN A1140 38.05 -95.22 REMARK 500 TYR A1161 31.44 -91.33 REMARK 500 SER A1165 55.88 -68.35 REMARK 500 SER A 335 127.75 -31.51 REMARK 500 ASP A 336 104.70 60.84 REMARK 500 GLU A 337 32.31 -142.89 REMARK 500 PHE A 376 41.56 -143.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 602 REMARK 999 REMARK 999 CHAIN A IS AN INTERNAL FUSION OF LYSOZYME (RESIDUES 2-161 OF UNP REMARK 999 P00720) BETWEEN RESIDUES 52-268 AND RESIDUES 300-379 OF REMARK 999 NEUROTENSIN RECEPTOR TYPE 1 (UNP P20789). AN OFFSET OF 1000 HAS REMARK 999 BEEN ADDED TO LYSOZYME RESIDUE NUMBERS WITHIN THE COORDINATES TO REMARK 999 DISTINGUISH THAT PORTION OF CHAIN A. LYSOZYME RESIDUES ARE REMARK 999 THEREFORE NUMBERED 1002-1161. DBREF 4GRV A 43 268 UNP P20789 NTR1_RAT 43 268 DBREF 4GRV A 1002 1161 UNP P00720 LYS_BPT4 2 161 DBREF 4GRV A 300 396 UNP P20789 NTR1_RAT 300 396 DBREF 4GRV B 8 13 PDB 4GRV 4GRV 8 13 SEQADV 4GRV ASP A 33 UNP P20789 EXPRESSION TAG SEQADV 4GRV TYR A 34 UNP P20789 EXPRESSION TAG SEQADV 4GRV LYS A 35 UNP P20789 EXPRESSION TAG SEQADV 4GRV ASP A 36 UNP P20789 EXPRESSION TAG SEQADV 4GRV ASP A 37 UNP P20789 EXPRESSION TAG SEQADV 4GRV ASP A 38 UNP P20789 EXPRESSION TAG SEQADV 4GRV ASP A 39 UNP P20789 EXPRESSION TAG SEQADV 4GRV ALA A 40 UNP P20789 EXPRESSION TAG SEQADV 4GRV THR A 41 UNP P20789 EXPRESSION TAG SEQADV 4GRV SER A 42 UNP P20789 EXPRESSION TAG SEQADV 4GRV LEU A 86 UNP P20789 ALA 86 ENGINEERED MUTATION SEQADV 4GRV ALA A 166 UNP P20789 GLU 166 ENGINEERED MUTATION SEQADV 4GRV ALA A 215 UNP P20789 GLY 215 ENGINEERED MUTATION SEQADV 4GRV THR A 1054 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 4GRV ALA A 1097 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 4GRV ASN A 1122 UNP P00720 GLN 122 ENGINEERED MUTATION SEQADV 4GRV ASN A 1123 UNP P00720 GLN 123 ENGINEERED MUTATION SEQADV 4GRV GLY A 1162 UNP P00720 LINKER SEQADV 4GRV SER A 1163 UNP P00720 LINKER SEQADV 4GRV GLY A 1164 UNP P00720 LINKER SEQADV 4GRV SER A 1165 UNP P00720 LINKER SEQADV 4GRV ALA A 310 UNP P20789 LEU 310 ENGINEERED MUTATION SEQADV 4GRV ALA A 358 UNP P20789 PHE 358 ENGINEERED MUTATION SEQADV 4GRV ALA A 360 UNP P20789 VAL 360 ENGINEERED MUTATION SEQADV 4GRV ALA A 397 UNP P20789 EXPRESSION TAG SEQADV 4GRV HIS A 398 UNP P20789 EXPRESSION TAG SEQADV 4GRV HIS A 399 UNP P20789 EXPRESSION TAG SEQADV 4GRV HIS A 400 UNP P20789 EXPRESSION TAG SEQADV 4GRV HIS A 401 UNP P20789 EXPRESSION TAG SEQADV 4GRV HIS A 402 UNP P20789 EXPRESSION TAG SEQADV 4GRV HIS A 403 UNP P20789 EXPRESSION TAG SEQADV 4GRV HIS A 404 UNP P20789 EXPRESSION TAG SEQADV 4GRV HIS A 405 UNP P20789 EXPRESSION TAG SEQADV 4GRV HIS A 406 UNP P20789 EXPRESSION TAG SEQADV 4GRV HIS A 407 UNP P20789 EXPRESSION TAG SEQADV 4GRV GLY A 408 UNP P20789 EXPRESSION TAG SEQADV 4GRV GLY A 409 UNP P20789 EXPRESSION TAG SEQRES 1 A 510 ASP TYR LYS ASP ASP ASP ASP ALA THR SER THR SER GLU SEQRES 2 A 510 SER ASP THR ALA GLY PRO ASN SER ASP LEU ASP VAL ASN SEQRES 3 A 510 THR ASP ILE TYR SER LYS VAL LEU VAL THR ALA ILE TYR SEQRES 4 A 510 LEU ALA LEU PHE VAL VAL GLY THR VAL GLY ASN SER VAL SEQRES 5 A 510 THR LEU PHE THR LEU ALA ARG LYS LYS SER LEU GLN SER SEQRES 6 A 510 LEU GLN SER THR VAL HIS TYR HIS LEU GLY SER LEU ALA SEQRES 7 A 510 LEU SER ASP LEU LEU ILE LEU LEU LEU ALA MET PRO VAL SEQRES 8 A 510 GLU LEU TYR ASN PHE ILE TRP VAL HIS HIS PRO TRP ALA SEQRES 9 A 510 PHE GLY ASP ALA GLY CYS ARG GLY TYR TYR PHE LEU ARG SEQRES 10 A 510 ASP ALA CYS THR TYR ALA THR ALA LEU ASN VAL ALA SER SEQRES 11 A 510 LEU SER VAL ALA ARG TYR LEU ALA ILE CYS HIS PRO PHE SEQRES 12 A 510 LYS ALA LYS THR LEU MET SER ARG SER ARG THR LYS LYS SEQRES 13 A 510 PHE ILE SER ALA ILE TRP LEU ALA SER ALA LEU LEU ALA SEQRES 14 A 510 ILE PRO MET LEU PHE THR MET GLY LEU GLN ASN ARG SER SEQRES 15 A 510 ALA ASP GLY THR HIS PRO GLY GLY LEU VAL CYS THR PRO SEQRES 16 A 510 ILE VAL ASP THR ALA THR VAL LYS VAL VAL ILE GLN VAL SEQRES 17 A 510 ASN THR PHE MET SER PHE LEU PHE PRO MET LEU VAL ILE SEQRES 18 A 510 SER ILE LEU ASN THR VAL ILE ALA ASN LYS LEU THR VAL SEQRES 19 A 510 MET VAL ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY SEQRES 20 A 510 LEU ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR SEQRES 21 A 510 THR ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER SEQRES 22 A 510 LEU ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY SEQRES 23 A 510 ARG ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU SEQRES 24 A 510 LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY SEQRES 25 A 510 ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER SEQRES 26 A 510 LEU ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL SEQRES 27 A 510 PHE GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SEQRES 28 A 510 SER LEU ARG MET LEU ASN ASN LYS ARG TRP ASP GLU ALA SEQRES 29 A 510 ALA VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR SEQRES 30 A 510 PRO ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR SEQRES 31 A 510 GLY THR TRP ASP ALA TYR GLY SER GLY SER VAL GLN ALA SEQRES 32 A 510 LEU ARG HIS GLY VAL LEU VAL ALA ARG ALA VAL VAL ILE SEQRES 33 A 510 ALA PHE VAL VAL CYS TRP LEU PRO TYR HIS VAL ARG ARG SEQRES 34 A 510 LEU MET PHE CYS TYR ILE SER ASP GLU GLN TRP THR THR SEQRES 35 A 510 PHE LEU PHE ASP PHE TYR HIS TYR PHE TYR MET LEU THR SEQRES 36 A 510 ASN ALA LEU ALA TYR ALA SER SER ALA ILE ASN PRO ILE SEQRES 37 A 510 LEU TYR ASN LEU VAL SER ALA ASN PHE ARG GLN VAL PHE SEQRES 38 A 510 LEU SER THR LEU ALA CYS LEU CYS PRO GLY TRP ARG HIS SEQRES 39 A 510 ARG ARG LYS ALA HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 40 A 510 HIS GLY GLY SEQRES 1 B 6 ARG ARG PRO TYR ILE LEU HET EPE A 601 15 HET EPE A 602 15 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 EPE 2(C8 H18 N2 O4 S) FORMUL 5 HOH *23(H2 O) HELIX 1 1 ASP A 60 LEU A 89 1 30 HELIX 2 2 LEU A 98 PHE A 128 1 31 HELIX 3 3 PHE A 137 HIS A 173 1 37 HELIX 4 4 THR A 186 ILE A 202 1 17 HELIX 5 5 PRO A 203 THR A 207 1 5 HELIX 6 6 HIS A 219 GLY A 221 5 3 HELIX 7 7 ASP A 230 PHE A 246 1 17 HELIX 8 8 PHE A 246 VAL A 266 1 21 HELIX 9 9 ASN A 1002 GLU A 1011 1 10 HELIX 10 10 SER A 1038 GLU A 1045 1 8 HELIX 11 11 THR A 1059 ASN A 1081 1 23 HELIX 12 12 LEU A 1084 LEU A 1091 1 8 HELIX 13 13 ALA A 1093 ALA A 1112 1 20 HELIX 14 14 PHE A 1114 ASN A 1122 1 9 HELIX 15 15 ARG A 1125 LYS A 1135 1 11 HELIX 16 16 THR A 1142 GLY A 1156 1 15 HELIX 17 17 TRP A 1158 GLY A 1162 5 5 HELIX 18 18 GLN A 301 TYR A 333 1 33 HELIX 19 19 THR A 340 ALA A 374 1 35 SHEET 1 A 2 MET A 208 ASN A 212 0 SHEET 2 A 2 LEU A 223 PRO A 227 -1 O VAL A 224 N GLN A 211 SHEET 1 B 3 ARG A1014 LYS A1019 0 SHEET 2 B 3 TYR A1025 GLY A1028 -1 O THR A1026 N TYR A1018 SHEET 3 B 3 HIS A1031 LEU A1032 -1 O HIS A1031 N ILE A1027 SSBOND 1 CYS A 142 CYS A 225 1555 1555 2.04 CISPEP 1 SER A 97 LEU A 98 0 2.75 CISPEP 2 HIS A 133 PRO A 134 0 4.08 CISPEP 3 SER A 184 ARG A 185 0 8.85 CISPEP 4 PRO A 1037 SER A 1038 0 -1.40 CISPEP 5 ASP A 1047 LYS A 1048 0 2.89 CISPEP 6 ASP A 336 GLU A 337 0 -8.01 SITE 1 AC1 1 TRP A 130 SITE 1 AC2 6 GLY A1030 LEU A1032 PHE A1104 GLN A1105 SITE 2 AC2 6 MET A1106 GLY A1107 CRYST1 49.960 69.619 97.550 90.00 101.75 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020016 0.000000 0.004163 0.00000 SCALE2 0.000000 0.014364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010471 0.00000