PDB Short entry for 4GWO HEADER GENE REGULATION 03-SEP-12 4GWO TITLE CRYSTAL STRUCTURE OF LIGAND BINDING DOMAIN OF LYSR FAMILY MEMBER,CYSB TITLE 2 IN COMPLEX WITH SULFATE FROM SALMONELLA TYPHIMURIUM LT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR CYSB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 86-324; COMPND 5 SYNONYM: CYS REGULON TRANSCRIPTIONAL ACTIVATOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2 / SGSC1412 / ATCC 700720; SOURCE 5 GENE: CYSB, STM1713; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS LTTR, CYSB, SULFATE, ALPHA/BETA FOLD, TRANSCRIPTION REGULATION, N- KEYWDS 2 ACETYL SERINE BINDING, DNA BINDING, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.MITTAL,A.K.SINGH,S.KUMARAN REVDAT 2 08-NOV-23 4GWO 1 REMARK SEQADV REVDAT 1 04-SEP-13 4GWO 0 JRNL AUTH M.MITTAL,A.K.SINGH,S.KUMARAN JRNL TITL CRYSTAL STRUCTURE OF LIGAND BINDING DOMAIN OF LYSR FAMILY JRNL TITL 2 MEMBER,CYSB IN COMPLEX WITH SULFATE FROM SALMONELLA JRNL TITL 3 TYPHIMURIUM LT2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 16162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3268 - 4.3452 0.99 2811 161 0.1666 0.2273 REMARK 3 2 4.3452 - 3.4514 0.99 2809 147 0.1921 0.2588 REMARK 3 3 3.4514 - 3.0158 1.00 2808 150 0.2338 0.3012 REMARK 3 4 3.0158 - 2.7404 0.97 2726 131 0.2480 0.3366 REMARK 3 5 2.7404 - 2.5441 0.82 2315 128 0.2408 0.3243 REMARK 3 6 2.5441 - 2.3940 0.67 1871 105 0.2193 0.3310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3837 REMARK 3 ANGLE : 1.404 5241 REMARK 3 CHIRALITY : 0.113 606 REMARK 3 PLANARITY : 0.006 670 REMARK 3 DIHEDRAL : 16.665 1352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 87:91 OR RESSEQ REMARK 3 93:120 OR RESSEQ 122:139 OR RESSEQ 141: REMARK 3 182 OR RESSEQ 184:257 OR RESSEQ 259:306 REMARK 3 OR RESSEQ 308:324 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 87:91 OR RESSEQ REMARK 3 93:120 OR RESSEQ 122:139 OR RESSEQ 141: REMARK 3 182 OR RESSEQ 184:257 OR RESSEQ 259:306 REMARK 3 OR RESSEQ 308:324 ) REMARK 3 ATOM PAIRS NUMBER : 1811 REMARK 3 RMSD : 0.095 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DURING CRYSTALLIZATION, CYSB N-TERMINAL REMARK 3 DOMAIN CLEAVED AND COULD NOT BE FOUND WHEN RUNNING IN THE GEL. REMARK 4 REMARK 4 4GWO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE POLAR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.394 REMARK 200 RESOLUTION RANGE LOW (A) : 45.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1AL3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%(W/V) PEG5000 MME,0.2M AMMONIUM REMARK 280 SULPHATE, 0.1M MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.65050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 GLN A 4 REMARK 465 GLN A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 TYR A 8 REMARK 465 ILE A 9 REMARK 465 VAL A 10 REMARK 465 GLU A 11 REMARK 465 VAL A 12 REMARK 465 VAL A 13 REMARK 465 ASN A 14 REMARK 465 HIS A 15 REMARK 465 ASN A 16 REMARK 465 LEU A 17 REMARK 465 ASN A 18 REMARK 465 VAL A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 GLU A 24 REMARK 465 GLY A 25 REMARK 465 LEU A 26 REMARK 465 TYR A 27 REMARK 465 THR A 28 REMARK 465 SER A 29 REMARK 465 GLN A 30 REMARK 465 PRO A 31 REMARK 465 GLY A 32 REMARK 465 ILE A 33 REMARK 465 SER A 34 REMARK 465 LYS A 35 REMARK 465 GLN A 36 REMARK 465 VAL A 37 REMARK 465 ARG A 38 REMARK 465 MET A 39 REMARK 465 LEU A 40 REMARK 465 GLU A 41 REMARK 465 ASP A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 GLY A 45 REMARK 465 ILE A 46 REMARK 465 GLN A 47 REMARK 465 ILE A 48 REMARK 465 PHE A 49 REMARK 465 ALA A 50 REMARK 465 ARG A 51 REMARK 465 SER A 52 REMARK 465 GLY A 53 REMARK 465 LYS A 54 REMARK 465 HIS A 55 REMARK 465 LEU A 56 REMARK 465 THR A 57 REMARK 465 GLN A 58 REMARK 465 VAL A 59 REMARK 465 THR A 60 REMARK 465 PRO A 61 REMARK 465 ALA A 62 REMARK 465 GLY A 63 REMARK 465 GLN A 64 REMARK 465 GLU A 65 REMARK 465 ILE A 66 REMARK 465 ILE A 67 REMARK 465 ARG A 68 REMARK 465 ILE A 69 REMARK 465 ALA A 70 REMARK 465 ARG A 71 REMARK 465 GLU A 72 REMARK 465 VAL A 73 REMARK 465 LEU A 74 REMARK 465 SER A 75 REMARK 465 LYS A 76 REMARK 465 VAL A 77 REMARK 465 ASP A 78 REMARK 465 ALA A 79 REMARK 465 ILE A 80 REMARK 465 LYS A 81 REMARK 465 SER A 82 REMARK 465 VAL A 83 REMARK 465 ALA A 84 REMARK 465 GLY A 85 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LEU B 3 REMARK 465 GLN B 4 REMARK 465 GLN B 5 REMARK 465 LEU B 6 REMARK 465 ARG B 7 REMARK 465 TYR B 8 REMARK 465 ILE B 9 REMARK 465 VAL B 10 REMARK 465 GLU B 11 REMARK 465 VAL B 12 REMARK 465 VAL B 13 REMARK 465 ASN B 14 REMARK 465 HIS B 15 REMARK 465 ASN B 16 REMARK 465 LEU B 17 REMARK 465 ASN B 18 REMARK 465 VAL B 19 REMARK 465 SER B 20 REMARK 465 SER B 21 REMARK 465 THR B 22 REMARK 465 ALA B 23 REMARK 465 GLU B 24 REMARK 465 GLY B 25 REMARK 465 LEU B 26 REMARK 465 TYR B 27 REMARK 465 THR B 28 REMARK 465 SER B 29 REMARK 465 GLN B 30 REMARK 465 PRO B 31 REMARK 465 GLY B 32 REMARK 465 ILE B 33 REMARK 465 SER B 34 REMARK 465 LYS B 35 REMARK 465 GLN B 36 REMARK 465 VAL B 37 REMARK 465 ARG B 38 REMARK 465 MET B 39 REMARK 465 LEU B 40 REMARK 465 GLU B 41 REMARK 465 ASP B 42 REMARK 465 GLU B 43 REMARK 465 LEU B 44 REMARK 465 GLY B 45 REMARK 465 ILE B 46 REMARK 465 GLN B 47 REMARK 465 ILE B 48 REMARK 465 PHE B 49 REMARK 465 ALA B 50 REMARK 465 ARG B 51 REMARK 465 SER B 52 REMARK 465 GLY B 53 REMARK 465 LYS B 54 REMARK 465 HIS B 55 REMARK 465 LEU B 56 REMARK 465 THR B 57 REMARK 465 GLN B 58 REMARK 465 VAL B 59 REMARK 465 THR B 60 REMARK 465 PRO B 61 REMARK 465 ALA B 62 REMARK 465 GLY B 63 REMARK 465 GLN B 64 REMARK 465 GLU B 65 REMARK 465 ILE B 66 REMARK 465 ILE B 67 REMARK 465 ARG B 68 REMARK 465 ILE B 69 REMARK 465 ALA B 70 REMARK 465 ARG B 71 REMARK 465 GLU B 72 REMARK 465 VAL B 73 REMARK 465 LEU B 74 REMARK 465 SER B 75 REMARK 465 LYS B 76 REMARK 465 VAL B 77 REMARK 465 ASP B 78 REMARK 465 ALA B 79 REMARK 465 ILE B 80 REMARK 465 LYS B 81 REMARK 465 SER B 82 REMARK 465 VAL B 83 REMARK 465 ALA B 84 REMARK 465 GLY B 85 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 SER A 182 OG REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 GLN B 317 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 86 N THR B 88 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 281 OE1 GLU B 310 2555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 290 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 LEU B 236 CA - CB - CG ANGL. DEV. = 20.5 DEGREES REMARK 500 ARG B 290 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 290 NE - CZ - NH1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG B 290 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 87 -37.79 -162.71 REMARK 500 ALA A 151 -34.62 61.81 REMARK 500 TYR A 155 76.85 -119.62 REMARK 500 SER A 182 35.54 -160.52 REMARK 500 THR A 202 60.91 37.43 REMARK 500 LEU A 216 150.83 -45.23 REMARK 500 SER A 277 9.65 -67.97 REMARK 500 ARG A 307 38.37 -93.82 REMARK 500 HIS B 87 -29.19 37.71 REMARK 500 ALA B 151 -33.95 63.77 REMARK 500 SER B 182 57.44 -154.74 REMARK 500 SER B 183 -22.10 -176.19 REMARK 500 THR B 202 59.74 37.98 REMARK 500 LEU B 216 152.18 -49.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 86 HIS A 87 147.04 REMARK 500 SER B 183 VAL B 184 -133.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GXA RELATED DB: PDB DBREF 4GWO A 1 324 UNP P06614 CYSB_SALTY 1 324 DBREF 4GWO B 1 324 UNP P06614 CYSB_SALTY 1 324 SEQADV 4GWO HIS A -5 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS A -4 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS A -3 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS A -2 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS A -1 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS A 0 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS B -5 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS B -4 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS B -3 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS B -2 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS B -1 UNP P06614 EXPRESSION TAG SEQADV 4GWO HIS B 0 UNP P06614 EXPRESSION TAG SEQRES 1 A 330 HIS HIS HIS HIS HIS HIS MET LYS LEU GLN GLN LEU ARG SEQRES 2 A 330 TYR ILE VAL GLU VAL VAL ASN HIS ASN LEU ASN VAL SER SEQRES 3 A 330 SER THR ALA GLU GLY LEU TYR THR SER GLN PRO GLY ILE SEQRES 4 A 330 SER LYS GLN VAL ARG MET LEU GLU ASP GLU LEU GLY ILE SEQRES 5 A 330 GLN ILE PHE ALA ARG SER GLY LYS HIS LEU THR GLN VAL SEQRES 6 A 330 THR PRO ALA GLY GLN GLU ILE ILE ARG ILE ALA ARG GLU SEQRES 7 A 330 VAL LEU SER LYS VAL ASP ALA ILE LYS SER VAL ALA GLY SEQRES 8 A 330 GLU HIS THR TRP PRO ASP LYS GLY SER LEU TYR ILE ALA SEQRES 9 A 330 THR THR HIS THR GLN ALA ARG TYR ALA LEU PRO GLY VAL SEQRES 10 A 330 ILE LYS GLY PHE ILE GLU ARG TYR PRO ARG VAL SER LEU SEQRES 11 A 330 HIS MET HIS GLN GLY SER PRO THR GLN ILE ALA GLU ALA SEQRES 12 A 330 VAL SER LYS GLY ASN ALA ASP PHE ALA ILE ALA THR GLU SEQRES 13 A 330 ALA LEU HIS LEU TYR ASP ASP LEU VAL MET LEU PRO CYS SEQRES 14 A 330 TYR HIS TRP ASN ARG SER ILE VAL VAL THR PRO ASP HIS SEQRES 15 A 330 PRO LEU ALA ALA THR SER SER VAL THR ILE GLU ALA LEU SEQRES 16 A 330 ALA GLN TYR PRO LEU VAL THR TYR THR PHE GLY PHE THR SEQRES 17 A 330 GLY ARG SER GLU LEU ASP THR ALA PHE ASN ARG ALA GLY SEQRES 18 A 330 LEU THR PRO ARG ILE VAL PHE THR ALA THR ASP ALA ASP SEQRES 19 A 330 VAL ILE LYS THR TYR VAL ARG LEU GLY LEU GLY VAL GLY SEQRES 20 A 330 VAL ILE ALA SER MET ALA VAL ASP PRO LEU ALA ASP PRO SEQRES 21 A 330 ASP LEU VAL ARG ILE ASP ALA HIS ASP ILE PHE SER HIS SEQRES 22 A 330 SER THR THR LYS ILE GLY PHE ARG ARG SER THR PHE LEU SEQRES 23 A 330 ARG SER TYR MET TYR ASP PHE ILE GLN ARG PHE ALA PRO SEQRES 24 A 330 HIS LEU THR ARG ASP VAL VAL ASP THR ALA VAL ALA LEU SEQRES 25 A 330 ARG SER ASN GLU GLU ILE GLU ALA MET PHE GLN ASP ILE SEQRES 26 A 330 LYS LEU PRO GLU LYS SEQRES 1 B 330 HIS HIS HIS HIS HIS HIS MET LYS LEU GLN GLN LEU ARG SEQRES 2 B 330 TYR ILE VAL GLU VAL VAL ASN HIS ASN LEU ASN VAL SER SEQRES 3 B 330 SER THR ALA GLU GLY LEU TYR THR SER GLN PRO GLY ILE SEQRES 4 B 330 SER LYS GLN VAL ARG MET LEU GLU ASP GLU LEU GLY ILE SEQRES 5 B 330 GLN ILE PHE ALA ARG SER GLY LYS HIS LEU THR GLN VAL SEQRES 6 B 330 THR PRO ALA GLY GLN GLU ILE ILE ARG ILE ALA ARG GLU SEQRES 7 B 330 VAL LEU SER LYS VAL ASP ALA ILE LYS SER VAL ALA GLY SEQRES 8 B 330 GLU HIS THR TRP PRO ASP LYS GLY SER LEU TYR ILE ALA SEQRES 9 B 330 THR THR HIS THR GLN ALA ARG TYR ALA LEU PRO GLY VAL SEQRES 10 B 330 ILE LYS GLY PHE ILE GLU ARG TYR PRO ARG VAL SER LEU SEQRES 11 B 330 HIS MET HIS GLN GLY SER PRO THR GLN ILE ALA GLU ALA SEQRES 12 B 330 VAL SER LYS GLY ASN ALA ASP PHE ALA ILE ALA THR GLU SEQRES 13 B 330 ALA LEU HIS LEU TYR ASP ASP LEU VAL MET LEU PRO CYS SEQRES 14 B 330 TYR HIS TRP ASN ARG SER ILE VAL VAL THR PRO ASP HIS SEQRES 15 B 330 PRO LEU ALA ALA THR SER SER VAL THR ILE GLU ALA LEU SEQRES 16 B 330 ALA GLN TYR PRO LEU VAL THR TYR THR PHE GLY PHE THR SEQRES 17 B 330 GLY ARG SER GLU LEU ASP THR ALA PHE ASN ARG ALA GLY SEQRES 18 B 330 LEU THR PRO ARG ILE VAL PHE THR ALA THR ASP ALA ASP SEQRES 19 B 330 VAL ILE LYS THR TYR VAL ARG LEU GLY LEU GLY VAL GLY SEQRES 20 B 330 VAL ILE ALA SER MET ALA VAL ASP PRO LEU ALA ASP PRO SEQRES 21 B 330 ASP LEU VAL ARG ILE ASP ALA HIS ASP ILE PHE SER HIS SEQRES 22 B 330 SER THR THR LYS ILE GLY PHE ARG ARG SER THR PHE LEU SEQRES 23 B 330 ARG SER TYR MET TYR ASP PHE ILE GLN ARG PHE ALA PRO SEQRES 24 B 330 HIS LEU THR ARG ASP VAL VAL ASP THR ALA VAL ALA LEU SEQRES 25 B 330 ARG SER ASN GLU GLU ILE GLU ALA MET PHE GLN ASP ILE SEQRES 26 B 330 LYS LEU PRO GLU LYS HET GOL A 401 6 HET SO4 A 402 5 HET SO4 B 401 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *17(H2 O) HELIX 1 1 THR A 100 ALA A 107 1 8 HELIX 2 2 LEU A 108 TYR A 119 1 12 HELIX 3 3 SER A 130 LYS A 140 1 11 HELIX 4 4 ALA A 151 TYR A 155 5 5 HELIX 5 5 HIS A 176 THR A 181 5 6 HELIX 6 6 THR A 185 ALA A 190 1 6 HELIX 7 7 GLY A 203 ALA A 214 1 12 HELIX 8 8 ASP A 226 LEU A 236 1 11 HELIX 9 9 MET A 246 VAL A 248 5 3 HELIX 10 10 ARG A 281 ALA A 292 1 12 HELIX 11 11 THR A 296 LEU A 306 1 11 HELIX 12 12 SER A 308 GLN A 317 1 10 HELIX 13 13 THR B 100 ALA B 107 1 8 HELIX 14 14 LEU B 108 TYR B 119 1 12 HELIX 15 15 SER B 130 LYS B 140 1 11 HELIX 16 16 ALA B 151 TYR B 155 5 5 HELIX 17 17 HIS B 176 THR B 181 5 6 HELIX 18 18 THR B 185 ALA B 190 1 6 HELIX 19 19 GLY B 203 ALA B 214 1 12 HELIX 20 20 ASP B 226 LEU B 236 1 11 HELIX 21 21 MET B 246 VAL B 248 5 3 HELIX 22 22 ARG B 281 ALA B 292 1 12 HELIX 23 23 THR B 296 LEU B 306 1 11 HELIX 24 24 SER B 308 GLN B 317 1 10 SHEET 1 A11 GLU A 323 LYS A 324 0 SHEET 2 A11 LEU A 158 TRP A 166 1 N HIS A 165 O LYS A 324 SHEET 3 A11 SER A 268 ARG A 275 -1 O SER A 268 N TRP A 166 SHEET 4 A11 PHE A 145 ALA A 148 -1 N ALA A 146 O GLY A 273 SHEET 5 A11 GLY A 93 THR A 99 1 N ALA A 98 O PHE A 145 SHEET 6 A11 VAL A 122 GLN A 128 1 O HIS A 125 N ILE A 97 SHEET 7 A11 ARG B 219 ALA B 224 1 O THR B 223 N GLN A 128 SHEET 8 A11 PRO B 193 TYR B 197 1 N LEU B 194 O ARG B 219 SHEET 9 A11 VAL B 240 ALA B 244 1 O VAL B 240 N PRO B 193 SHEET 10 A11 ARG B 168 VAL B 172 -1 N VAL B 171 O GLY B 241 SHEET 11 A11 VAL B 257 ASP B 260 -1 O VAL B 257 N VAL B 172 SHEET 1 B11 VAL A 257 ASP A 260 0 SHEET 2 B11 ARG A 168 VAL A 172 -1 N VAL A 172 O VAL A 257 SHEET 3 B11 VAL A 240 ALA A 244 -1 O GLY A 241 N VAL A 171 SHEET 4 B11 PRO A 193 TYR A 197 1 N PRO A 193 O VAL A 240 SHEET 5 B11 ARG A 219 ALA A 224 1 O ARG A 219 N LEU A 194 SHEET 6 B11 VAL B 122 GLN B 128 1 O GLN B 128 N THR A 223 SHEET 7 B11 GLY B 93 THR B 99 1 N ILE B 97 O HIS B 125 SHEET 8 B11 PHE B 145 ALA B 148 1 O PHE B 145 N ALA B 98 SHEET 9 B11 SER B 268 PHE B 274 -1 O GLY B 273 N ALA B 146 SHEET 10 B11 VAL B 159 TRP B 166 -1 N TRP B 166 O SER B 268 SHEET 11 B11 GLU B 323 LYS B 324 1 O LYS B 324 N HIS B 165 CISPEP 1 SER B 182 SER B 183 0 -12.05 SITE 1 AC1 1 HIS A 267 SITE 1 AC2 7 THR A 100 THR A 102 GLN A 103 ALA A 148 SITE 2 AC2 7 THR A 149 GLU A 150 THR A 202 SITE 1 AC3 7 THR B 100 THR B 102 GLN B 103 ALA B 148 SITE 2 AC3 7 THR B 149 GLU B 150 THR B 202 CRYST1 46.921 105.301 47.751 90.00 103.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021312 0.000000 0.005022 0.00000 SCALE2 0.000000 0.009497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021516 0.00000