PDB Short entry for 4GZL HEADER HYDROLASE 06-SEP-12 4GZL TITLE CRYSTAL STRUCTURE OF RAC1 Q61L MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-177; COMPND 5 SYNONYM: RAC1, CELL MIGRATION-INDUCING GENE 5 PROTEIN, RAS-LIKE COMPND 6 PROTEIN TC25, P21-RAC1; COMPND 7 EC: 3.6.5.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC1, TC25, MIG5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RILP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28 KEYWDS ROSSMANN FOLD, GTP BINDING, MEMBRANE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.H.HA,T.J.BOGGON REVDAT 4 13-SEP-23 4GZL 1 REMARK SEQADV LINK REVDAT 3 30-JAN-13 4GZL 1 JRNL REVDAT 2 16-JAN-13 4GZL 1 JRNL REVDAT 1 12-DEC-12 4GZL 0 JRNL AUTH M.J.DAVIS,B.H.HA,E.C.HOLMAN,R.HALABAN,J.SCHLESSINGER, JRNL AUTH 2 T.J.BOGGON JRNL TITL RAC1P29S IS A SPONTANEOUSLY ACTIVATING CANCER-ASSOCIATED JRNL TITL 2 GTPASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 912 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23284172 JRNL DOI 10.1073/PNAS.1220895110 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1194 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1462 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.39000 REMARK 3 B22 (A**2) : 2.54000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.608 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2893 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3964 ; 2.024 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 6.590 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;39.076 ;24.386 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 487 ;15.653 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2118 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 176 4 REMARK 3 1 B 3 B 176 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1322 ; 0.320 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1322 ; 1.930 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 77 REMARK 3 RESIDUE RANGE : A 78 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4749 -14.0472 8.3333 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.0285 REMARK 3 T33: 0.0264 T12: 0.0006 REMARK 3 T13: 0.0091 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.9942 L22: 2.1263 REMARK 3 L33: 3.6056 L12: -0.9810 REMARK 3 L13: 0.9686 L23: -0.4141 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: -0.3298 S13: 0.1068 REMARK 3 S21: 0.1934 S22: 0.0365 S23: 0.0772 REMARK 3 S31: -0.0178 S32: -0.0589 S33: 0.0223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 77 REMARK 3 RESIDUE RANGE : B 78 B 176 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7881 -14.0097 37.3697 REMARK 3 T TENSOR REMARK 3 T11: 0.0216 T22: 0.0366 REMARK 3 T33: 0.0280 T12: -0.0060 REMARK 3 T13: 0.0069 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 3.6488 L22: 2.0156 REMARK 3 L33: 3.0077 L12: 1.2704 REMARK 3 L13: 0.6637 L23: 0.3926 REMARK 3 S TENSOR REMARK 3 S11: -0.0916 S12: 0.3610 S13: 0.0440 REMARK 3 S21: -0.2039 S22: 0.0976 S23: -0.0501 REMARK 3 S31: -0.0022 S32: 0.0529 S33: -0.0060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4GZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23219 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2440 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.62500 REMARK 200 R SYM FOR SHELL (I) : 0.62500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.541 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TH5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-18% PEG4000, 6% ISOPROPANOL, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.91500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.79850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.79850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.91500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -26 REMARK 465 GLY A -25 REMARK 465 SER A -24 REMARK 465 SER A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 LEU A -13 REMARK 465 VAL A -12 REMARK 465 PRO A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 MET A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 GLN A 2 REMARK 465 GLU A 31 REMARK 465 GLY A 48 REMARK 465 MET B -26 REMARK 465 GLY B -25 REMARK 465 SER B -24 REMARK 465 SER B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 LEU B -13 REMARK 465 VAL B -12 REMARK 465 PRO B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 MET B -6 REMARK 465 GLU B -5 REMARK 465 ASN B -4 REMARK 465 LEU B -3 REMARK 465 TYR B -2 REMARK 465 PHE B -1 REMARK 465 GLN B 0 REMARK 465 GLY B 1 REMARK 465 GLY B 30 REMARK 465 LEU B 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 66 O PHE B 37 1.89 REMARK 500 O HOH B 1121 O HOH B 1122 2.06 REMARK 500 O HOH B 1137 O HOH B 1165 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 56 CE2 TRP A 56 CD2 0.084 REMARK 500 TRP A 97 CE2 TRP A 97 CD2 0.081 REMARK 500 TRP B 97 CE2 TRP B 97 CD2 0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 102 CD - NE - CZ ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG A 102 NE - CZ - NH2 ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG B 68 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 68 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 29 152.84 -49.61 REMARK 500 PHE A 37 139.54 -170.71 REMARK 500 LYS A 96 -55.66 -124.36 REMARK 500 PHE B 37 136.75 -174.97 REMARK 500 LYS B 96 -56.11 -125.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 THR A 35 OG1 83.0 REMARK 620 3 GNP A 201 O2G 168.0 91.1 REMARK 620 4 GNP A 201 O2B 86.2 162.7 97.0 REMARK 620 5 HOH A 309 O 90.6 96.6 100.4 96.9 REMARK 620 6 HOH A 316 O 83.8 84.4 85.3 81.0 174.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 17 OG1 REMARK 620 2 THR B 35 OG1 79.8 REMARK 620 3 GNP B1000 O1G 176.1 96.5 REMARK 620 4 GNP B1000 O1B 89.7 169.2 94.0 REMARK 620 5 HOH B1105 O 78.8 88.4 102.3 87.2 REMARK 620 6 HOH B1125 O 86.9 89.3 91.9 92.7 165.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SBD RELATED DB: PDB REMARK 900 RAC1 P29S MUTANT REMARK 900 RELATED ID: 3SBE RELATED DB: PDB REMARK 900 RAC1 P29S MUTANT REMARK 900 RELATED ID: 3TH5 RELATED DB: PDB REMARK 900 RAC1 WILD-TYPE REMARK 900 RELATED ID: 4GZM RELATED DB: PDB DBREF 4GZL A 2 177 UNP P63000 RAC1_HUMAN 2 177 DBREF 4GZL B 2 177 UNP P63000 RAC1_HUMAN 2 177 SEQADV 4GZL MET A -26 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLY A -25 UNP P63000 EXPRESSION TAG SEQADV 4GZL SER A -24 UNP P63000 EXPRESSION TAG SEQADV 4GZL SER A -23 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS A -22 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS A -21 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS A -20 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS A -19 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS A -18 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS A -17 UNP P63000 EXPRESSION TAG SEQADV 4GZL SER A -16 UNP P63000 EXPRESSION TAG SEQADV 4GZL SER A -15 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLY A -14 UNP P63000 EXPRESSION TAG SEQADV 4GZL LEU A -13 UNP P63000 EXPRESSION TAG SEQADV 4GZL VAL A -12 UNP P63000 EXPRESSION TAG SEQADV 4GZL PRO A -11 UNP P63000 EXPRESSION TAG SEQADV 4GZL ARG A -10 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLY A -9 UNP P63000 EXPRESSION TAG SEQADV 4GZL SER A -8 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS A -7 UNP P63000 EXPRESSION TAG SEQADV 4GZL MET A -6 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLU A -5 UNP P63000 EXPRESSION TAG SEQADV 4GZL ASN A -4 UNP P63000 EXPRESSION TAG SEQADV 4GZL LEU A -3 UNP P63000 EXPRESSION TAG SEQADV 4GZL TYR A -2 UNP P63000 EXPRESSION TAG SEQADV 4GZL PHE A -1 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLN A 0 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLY A 1 UNP P63000 EXPRESSION TAG SEQADV 4GZL LEU A 61 UNP P63000 GLN 61 ENGINEERED MUTATION SEQADV 4GZL MET B -26 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLY B -25 UNP P63000 EXPRESSION TAG SEQADV 4GZL SER B -24 UNP P63000 EXPRESSION TAG SEQADV 4GZL SER B -23 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS B -22 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS B -21 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS B -20 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS B -19 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS B -18 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS B -17 UNP P63000 EXPRESSION TAG SEQADV 4GZL SER B -16 UNP P63000 EXPRESSION TAG SEQADV 4GZL SER B -15 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLY B -14 UNP P63000 EXPRESSION TAG SEQADV 4GZL LEU B -13 UNP P63000 EXPRESSION TAG SEQADV 4GZL VAL B -12 UNP P63000 EXPRESSION TAG SEQADV 4GZL PRO B -11 UNP P63000 EXPRESSION TAG SEQADV 4GZL ARG B -10 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLY B -9 UNP P63000 EXPRESSION TAG SEQADV 4GZL SER B -8 UNP P63000 EXPRESSION TAG SEQADV 4GZL HIS B -7 UNP P63000 EXPRESSION TAG SEQADV 4GZL MET B -6 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLU B -5 UNP P63000 EXPRESSION TAG SEQADV 4GZL ASN B -4 UNP P63000 EXPRESSION TAG SEQADV 4GZL LEU B -3 UNP P63000 EXPRESSION TAG SEQADV 4GZL TYR B -2 UNP P63000 EXPRESSION TAG SEQADV 4GZL PHE B -1 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLN B 0 UNP P63000 EXPRESSION TAG SEQADV 4GZL GLY B 1 UNP P63000 EXPRESSION TAG SEQADV 4GZL LEU B 61 UNP P63000 GLN 61 ENGINEERED MUTATION SEQRES 1 A 204 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 204 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 A 204 GLN GLY GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY SEQRES 4 A 204 ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR SEQRES 5 A 204 ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP SEQRES 6 A 204 ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL SEQRES 7 A 204 ASN LEU GLY LEU TRP ASP THR ALA GLY LEU GLU ASP TYR SEQRES 8 A 204 ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL SEQRES 9 A 204 PHE LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE SEQRES 10 A 204 GLU ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS SEQRES 11 A 204 HIS CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS SEQRES 12 A 204 LEU ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU SEQRES 13 A 204 LYS GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY SEQRES 14 A 204 LEU ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU SEQRES 15 A 204 GLU CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL SEQRES 16 A 204 PHE ASP GLU ALA ILE ARG ALA VAL LEU SEQRES 1 B 204 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 204 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 B 204 GLN GLY GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY SEQRES 4 B 204 ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR SEQRES 5 B 204 ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP SEQRES 6 B 204 ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL SEQRES 7 B 204 ASN LEU GLY LEU TRP ASP THR ALA GLY LEU GLU ASP TYR SEQRES 8 B 204 ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL SEQRES 9 B 204 PHE LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE SEQRES 10 B 204 GLU ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS SEQRES 11 B 204 HIS CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS SEQRES 12 B 204 LEU ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU SEQRES 13 B 204 LYS GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY SEQRES 14 B 204 LEU ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU SEQRES 15 B 204 GLU CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL SEQRES 16 B 204 PHE ASP GLU ALA ILE ARG ALA VAL LEU HET GNP A 201 32 HET MG A 202 1 HET IPA A 203 4 HET GNP B1000 32 HET MG B1001 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 3 GNP 2(C10 H17 N6 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 IPA C3 H8 O FORMUL 8 HOH *156(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 LEU A 61 ASP A 65 5 5 HELIX 3 3 LEU A 67 TYR A 72 5 6 HELIX 4 4 SER A 86 LYS A 96 1 11 HELIX 5 5 LYS A 96 CYS A 105 1 10 HELIX 6 6 LYS A 116 ASP A 121 1 6 HELIX 7 7 ASP A 122 LYS A 132 1 11 HELIX 8 8 THR A 138 ILE A 149 1 12 HELIX 9 9 GLY A 164 ALA A 175 1 12 HELIX 10 10 GLY B 15 ASN B 26 1 12 HELIX 11 11 LEU B 61 ASP B 65 5 5 HELIX 12 12 LEU B 67 TYR B 72 5 6 HELIX 13 13 SER B 86 LYS B 96 1 11 HELIX 14 14 LYS B 96 CYS B 105 1 10 HELIX 15 15 LYS B 116 ASP B 121 1 6 HELIX 16 16 ASP B 122 GLU B 131 1 10 HELIX 17 17 THR B 138 ILE B 149 1 12 HELIX 18 18 GLY B 164 VAL B 176 1 13 SHEET 1 A 6 PHE A 37 MET A 45 0 SHEET 2 A 6 PRO A 50 THR A 58 -1 O LEU A 55 N TYR A 40 SHEET 3 A 6 ILE A 4 GLY A 10 1 N ILE A 4 O GLY A 54 SHEET 4 A 6 VAL A 77 SER A 83 1 O CYS A 81 N VAL A 9 SHEET 5 A 6 ILE A 110 THR A 115 1 O ILE A 111 N PHE A 78 SHEET 6 A 6 LYS A 153 GLU A 156 1 O LEU A 155 N GLY A 114 SHEET 1 B 6 PHE B 37 VAL B 46 0 SHEET 2 B 6 LYS B 49 THR B 58 -1 O LEU B 55 N TYR B 40 SHEET 3 B 6 ALA B 3 VAL B 9 1 N ILE B 4 O GLY B 54 SHEET 4 B 6 VAL B 77 SER B 83 1 O LEU B 79 N VAL B 9 SHEET 5 B 6 ILE B 110 THR B 115 1 O ILE B 111 N PHE B 78 SHEET 6 B 6 LYS B 153 GLU B 156 1 O LEU B 155 N GLY B 114 LINK OG1 THR A 17 MG MG A 202 1555 1555 2.12 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.04 LINK O2G GNP A 201 MG MG A 202 1555 1555 1.78 LINK O2B GNP A 201 MG MG A 202 1555 1555 2.08 LINK MG MG A 202 O HOH A 309 1555 1555 2.10 LINK MG MG A 202 O HOH A 316 1555 1555 2.10 LINK OG1 THR B 17 MG MG B1001 1555 1555 2.10 LINK OG1 THR B 35 MG MG B1001 1555 1555 2.28 LINK O1G GNP B1000 MG MG B1001 1555 1555 1.91 LINK O1B GNP B1000 MG MG B1001 1555 1555 2.04 LINK MG MG B1001 O HOH B1105 1555 1555 2.13 LINK MG MG B1001 O HOH B1125 1555 1555 2.25 CISPEP 1 PRO A 29 GLY A 30 0 7.65 SITE 1 AC1 25 GLY A 12 ALA A 13 VAL A 14 GLY A 15 SITE 2 AC1 25 LYS A 16 THR A 17 CYS A 18 PHE A 28 SITE 3 AC1 25 TYR A 32 PRO A 34 THR A 35 GLY A 60 SITE 4 AC1 25 LYS A 116 ASP A 118 LEU A 119 SER A 158 SITE 5 AC1 25 ALA A 159 LEU A 160 MG A 202 HOH A 309 SITE 6 AC1 25 HOH A 311 HOH A 315 HOH A 316 HOH A 317 SITE 7 AC1 25 HOH A 363 SITE 1 AC2 5 THR A 17 THR A 35 GNP A 201 HOH A 309 SITE 2 AC2 5 HOH A 316 SITE 1 AC3 3 ASP A 118 THR A 161 ARG A 163 SITE 1 AC4 25 GLY B 12 ALA B 13 VAL B 14 GLY B 15 SITE 2 AC4 25 LYS B 16 THR B 17 CYS B 18 PHE B 28 SITE 3 AC4 25 TYR B 32 PRO B 34 THR B 35 GLY B 60 SITE 4 AC4 25 LYS B 116 ASP B 118 LEU B 119 SER B 158 SITE 5 AC4 25 ALA B 159 LEU B 160 MG B1001 HOH B1105 SITE 6 AC4 25 HOH B1123 HOH B1124 HOH B1125 HOH B1128 SITE 7 AC4 25 HOH B1169 SITE 1 AC5 5 THR B 17 THR B 35 GNP B1000 HOH B1105 SITE 2 AC5 5 HOH B1125 CRYST1 49.830 72.940 91.597 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020068 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010917 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.999838 0.016693 -0.006677 3.77558 1 MTRIX2 2 0.016755 0.999817 -0.009258 0.19727 1 MTRIX3 2 0.006521 -0.009369 -0.999935 45.51987 1