PDB Short entry for 4H2G HEADER HYDROLASE 12-SEP-12 4H2G TITLE HUMAN ECTO-5'-NUCLEOTIDASE (CD73): CRYSTAL FORM II (OPEN) IN COMPLEX TITLE 2 WITH ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5'-NT, ECTO-5'-NUCLEOTIDASE; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5E, NT5, NTE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIMER, HYDROLASE, PHOSPHATASE, EXTRACELLULAR EXPDTA X-RAY DIFFRACTION AUTHOR N.STRAETER,K.M.KNAPP,M.ZEBISCH,J.PIPPEL REVDAT 2 26-DEC-12 4H2G 1 JRNL REVDAT 1 28-NOV-12 4H2G 0 JRNL AUTH K.KNAPP,M.ZEBISCH,J.PIPPEL,A.EL-TAYEB,C.E.MULLER,N.STRATER JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN ECTO-5'-NUCLEOTIDASE (CD73): JRNL TITL 2 INSIGHTS INTO THE REGULATION OF PURINERGIC SIGNALING. JRNL REF STRUCTURE V. 20 2161 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 23142347 JRNL DOI 10.1016/J.STR.2012.10.001 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 83411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 776 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.64000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -2.11000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.081 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4287 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5837 ; 1.996 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 551 ; 8.318 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;38.198 ;24.767 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 736 ;12.888 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.407 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 652 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3253 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4287 ; 5.147 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 185 ;79.927 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4773 ;35.325 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4590 33.8075 13.5170 REMARK 3 T TENSOR REMARK 3 T11: 0.0020 T22: 0.0205 REMARK 3 T33: 0.0595 T12: -0.0002 REMARK 3 T13: 0.0010 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.1819 L22: 0.1644 REMARK 3 L33: 0.1158 L12: 0.0526 REMARK 3 L13: 0.0655 L23: 0.0161 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.0034 S13: 0.0068 REMARK 3 S21: -0.0147 S22: -0.0045 S23: -0.0117 REMARK 3 S31: -0.0034 S32: 0.0090 S33: 0.0007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 549 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2006 10.6551 36.1546 REMARK 3 T TENSOR REMARK 3 T11: 0.0014 T22: 0.0232 REMARK 3 T33: 0.0638 T12: 0.0025 REMARK 3 T13: 0.0004 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1095 L22: 0.2291 REMARK 3 L33: 0.1705 L12: 0.0400 REMARK 3 L13: 0.0555 L23: 0.0308 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0150 S13: 0.0097 REMARK 3 S21: 0.0096 S22: -0.0010 S23: 0.0014 REMARK 3 S31: -0.0096 S32: -0.0041 S33: 0.0024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4H2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB074934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84660 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 29.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M MAGNESIUM SULFATE, 0.1 M TRIS- REMARK 280 HCL , PH 8.5, VAPOR DIFFUSION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.55000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -214.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.10000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1430 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 VAL A 12 REMARK 465 GLY A 13 REMARK 465 THR A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 ASN A 17 REMARK 465 ASP A 18 REMARK 465 ASP A 19 REMARK 465 ASP A 20 REMARK 465 ASP A 21 REMARK 465 LYS A 22 REMARK 465 SER A 23 REMARK 465 PRO A 24 REMARK 465 ASP A 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 524 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 524 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 88 121.95 78.08 REMARK 500 SER A 141 116.40 -165.58 REMARK 500 HIS A 243 -40.46 78.15 REMARK 500 SER A 255 -151.03 -150.63 REMARK 500 ALA A 280 52.47 -144.09 REMARK 500 TYR A 281 -120.81 57.46 REMARK 500 ASN A 306 147.58 -179.73 REMARK 500 SER A 352 -62.24 -90.14 REMARK 500 LYS A 536 -52.75 77.23 REMARK 500 TYR A 539 54.85 -153.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 129 11.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER A 549 17.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 772 O REMARK 620 2 HIS A 220 NE2 126.8 REMARK 620 3 ASN A 117 OD1 135.6 96.3 REMARK 620 4 HIS A 243 ND1 96.3 96.1 88.5 REMARK 620 5 ASP A 85 OD2 77.2 88.2 96.0 173.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 704 O REMARK 620 2 ASP A 36 OD1 87.7 REMARK 620 3 HOH A 772 O 97.2 92.9 REMARK 620 4 HIS A 38 NE2 90.8 105.2 160.5 REMARK 620 5 ASP A 85 OD2 175.9 90.9 79.0 93.3 REMARK 620 6 HOH A 718 O 83.8 169.4 81.8 81.4 97.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 213 O REMARK 620 2 GLY A 298 O 89.0 REMARK 620 3 HOH A1206 O 94.5 172.7 REMARK 620 4 HOH A 726 O 87.2 86.1 87.6 REMARK 620 5 ASP A 237 OD2 96.9 96.5 89.5 175.1 REMARK 620 6 ASP A 237 OD1 149.2 89.3 91.1 123.3 52.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H2F RELATED DB: PDB REMARK 900 RELATED ID: 4H2I RELATED DB: PDB REMARK 900 RELATED ID: 4H1Y RELATED DB: PDB REMARK 900 RELATED ID: 4H2G RELATED DB: PDB DBREF 4H2G A 27 549 UNP P21589 5NTD_HUMAN 27 549 SEQADV 4H2G MET A 4 UNP P21589 EXPRESSION TAG SEQADV 4H2G ALA A 5 UNP P21589 EXPRESSION TAG SEQADV 4H2G HIS A 6 UNP P21589 EXPRESSION TAG SEQADV 4H2G HIS A 7 UNP P21589 EXPRESSION TAG SEQADV 4H2G HIS A 8 UNP P21589 EXPRESSION TAG SEQADV 4H2G HIS A 9 UNP P21589 EXPRESSION TAG SEQADV 4H2G HIS A 10 UNP P21589 EXPRESSION TAG SEQADV 4H2G HIS A 11 UNP P21589 EXPRESSION TAG SEQADV 4H2G VAL A 12 UNP P21589 EXPRESSION TAG SEQADV 4H2G GLY A 13 UNP P21589 EXPRESSION TAG SEQADV 4H2G THR A 14 UNP P21589 EXPRESSION TAG SEQADV 4H2G GLY A 15 UNP P21589 EXPRESSION TAG SEQADV 4H2G SER A 16 UNP P21589 EXPRESSION TAG SEQADV 4H2G ASN A 17 UNP P21589 EXPRESSION TAG SEQADV 4H2G ASP A 18 UNP P21589 EXPRESSION TAG SEQADV 4H2G ASP A 19 UNP P21589 EXPRESSION TAG SEQADV 4H2G ASP A 20 UNP P21589 EXPRESSION TAG SEQADV 4H2G ASP A 21 UNP P21589 EXPRESSION TAG SEQADV 4H2G LYS A 22 UNP P21589 EXPRESSION TAG SEQADV 4H2G SER A 23 UNP P21589 EXPRESSION TAG SEQADV 4H2G PRO A 24 UNP P21589 EXPRESSION TAG SEQADV 4H2G ASP A 25 UNP P21589 EXPRESSION TAG SEQADV 4H2G PRO A 26 UNP P21589 EXPRESSION TAG SEQADV 4H2G ASP A 53 UNP P21589 ASN 53 ENGINEERED MUTATION SEQADV 4H2G ASP A 311 UNP P21589 ASN 311 ENGINEERED MUTATION SEQADV 4H2G ASP A 333 UNP P21589 ASN 333 ENGINEERED MUTATION SEQADV 4H2G ALA A 376 UNP P21589 THR 376 ENGINEERED MUTATION SEQADV 4H2G ASP A 403 UNP P21589 ASN 403 ENGINEERED MUTATION SEQADV 4H2G ALA A 478 UNP P21589 LYS 478 ENGINEERED MUTATION SEQADV 4H2G ALA A 480 UNP P21589 ARG 480 ENGINEERED MUTATION SEQRES 1 A 546 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR GLY SER SEQRES 2 A 546 ASN ASP ASP ASP ASP LYS SER PRO ASP PRO TRP GLU LEU SEQRES 3 A 546 THR ILE LEU HIS THR ASN ASP VAL HIS SER ARG LEU GLU SEQRES 4 A 546 GLN THR SER GLU ASP SER SER LYS CYS VAL ASP ALA SER SEQRES 5 A 546 ARG CYS MET GLY GLY VAL ALA ARG LEU PHE THR LYS VAL SEQRES 6 A 546 GLN GLN ILE ARG ARG ALA GLU PRO ASN VAL LEU LEU LEU SEQRES 7 A 546 ASP ALA GLY ASP GLN TYR GLN GLY THR ILE TRP PHE THR SEQRES 8 A 546 VAL TYR LYS GLY ALA GLU VAL ALA HIS PHE MET ASN ALA SEQRES 9 A 546 LEU ARG TYR ASP ALA MET ALA LEU GLY ASN HIS GLU PHE SEQRES 10 A 546 ASP ASN GLY VAL GLU GLY LEU ILE GLU PRO LEU LEU LYS SEQRES 11 A 546 GLU ALA LYS PHE PRO ILE LEU SER ALA ASN ILE LYS ALA SEQRES 12 A 546 LYS GLY PRO LEU ALA SER GLN ILE SER GLY LEU TYR LEU SEQRES 13 A 546 PRO TYR LYS VAL LEU PRO VAL GLY ASP GLU VAL VAL GLY SEQRES 14 A 546 ILE VAL GLY TYR THR SER LYS GLU THR PRO PHE LEU SER SEQRES 15 A 546 ASN PRO GLY THR ASN LEU VAL PHE GLU ASP GLU ILE THR SEQRES 16 A 546 ALA LEU GLN PRO GLU VAL ASP LYS LEU LYS THR LEU ASN SEQRES 17 A 546 VAL ASN LYS ILE ILE ALA LEU GLY HIS SER GLY PHE GLU SEQRES 18 A 546 MET ASP LYS LEU ILE ALA GLN LYS VAL ARG GLY VAL ASP SEQRES 19 A 546 VAL VAL VAL GLY GLY HIS SER ASN THR PHE LEU TYR THR SEQRES 20 A 546 GLY ASN PRO PRO SER LYS GLU VAL PRO ALA GLY LYS TYR SEQRES 21 A 546 PRO PHE ILE VAL THR SER ASP ASP GLY ARG LYS VAL PRO SEQRES 22 A 546 VAL VAL GLN ALA TYR ALA PHE GLY LYS TYR LEU GLY TYR SEQRES 23 A 546 LEU LYS ILE GLU PHE ASP GLU ARG GLY ASN VAL ILE SER SEQRES 24 A 546 SER HIS GLY ASN PRO ILE LEU LEU ASP SER SER ILE PRO SEQRES 25 A 546 GLU ASP PRO SER ILE LYS ALA ASP ILE ASN LYS TRP ARG SEQRES 26 A 546 ILE LYS LEU ASP ASP TYR SER THR GLN GLU LEU GLY LYS SEQRES 27 A 546 THR ILE VAL TYR LEU ASP GLY SER SER GLN SER CYS ARG SEQRES 28 A 546 PHE ARG GLU CYS ASN MET GLY ASN LEU ILE CYS ASP ALA SEQRES 29 A 546 MET ILE ASN ASN ASN LEU ARG HIS ALA ASP GLU MET PHE SEQRES 30 A 546 TRP ASN HIS VAL SER MET CYS ILE LEU ASN GLY GLY GLY SEQRES 31 A 546 ILE ARG SER PRO ILE ASP GLU ARG ASN ASP GLY THR ILE SEQRES 32 A 546 THR TRP GLU ASN LEU ALA ALA VAL LEU PRO PHE GLY GLY SEQRES 33 A 546 THR PHE ASP LEU VAL GLN LEU LYS GLY SER THR LEU LYS SEQRES 34 A 546 LYS ALA PHE GLU HIS SER VAL HIS ARG TYR GLY GLN SER SEQRES 35 A 546 THR GLY GLU PHE LEU GLN VAL GLY GLY ILE HIS VAL VAL SEQRES 36 A 546 TYR ASP LEU SER ARG LYS PRO GLY ASP ARG VAL VAL LYS SEQRES 37 A 546 LEU ASP VAL LEU CYS THR ALA CYS ALA VAL PRO SER TYR SEQRES 38 A 546 ASP PRO LEU LYS MET ASP GLU VAL TYR LYS VAL ILE LEU SEQRES 39 A 546 PRO ASN PHE LEU ALA ASN GLY GLY ASP GLY PHE GLN MET SEQRES 40 A 546 ILE LYS ASP GLU LEU LEU ARG HIS ASP SER GLY ASP GLN SEQRES 41 A 546 ASP ILE ASN VAL VAL SER THR TYR ILE SER LYS MET LYS SEQRES 42 A 546 VAL ILE TYR PRO ALA VAL GLU GLY ARG ILE LYS PHE SER HET ZN A 601 1 HET ZN A 602 1 HET ADN A 603 19 HET CA A 604 1 HET CL A 605 1 HETNAM ZN ZINC ION HETNAM ADN ADENOSINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 ADN C10 H13 N5 O4 FORMUL 5 CA CA 2+ FORMUL 6 CL CL 1- FORMUL 7 HOH *776(H2 O) HELIX 1 1 ASP A 53 CYS A 57 5 5 HELIX 2 2 GLY A 60 GLU A 75 1 16 HELIX 3 3 THR A 90 LYS A 97 1 8 HELIX 4 4 GLY A 98 ARG A 109 1 12 HELIX 5 5 GLY A 116 ASP A 121 5 6 HELIX 6 6 ASN A 122 GLU A 129 1 8 HELIX 7 7 PRO A 149 SER A 155 1 7 HELIX 8 8 GLU A 180 SER A 185 1 6 HELIX 9 9 ASP A 195 LEU A 210 1 16 HELIX 10 10 GLY A 222 VAL A 233 1 12 HELIX 11 11 ASP A 317 THR A 336 1 20 HELIX 12 12 SER A 349 ARG A 354 1 6 HELIX 13 13 CYS A 358 ASN A 372 1 15 HELIX 14 14 GLY A 392 ILE A 394 5 3 HELIX 15 15 TRP A 408 LEU A 415 1 8 HELIX 16 16 GLY A 428 HIS A 440 1 13 HELIX 17 17 ASN A 499 ASN A 503 1 5 HELIX 18 18 GLY A 504 GLY A 507 5 4 HELIX 19 19 PHE A 508 LEU A 515 1 8 HELIX 20 20 ASP A 524 LYS A 536 1 13 SHEET 1 A 6 ILE A 139 LEU A 140 0 SHEET 2 A 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 A 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 A 6 TRP A 27 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 A 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 A 6 VAL A 300 GLY A 305 -1 O HIS A 304 N LYS A 291 SHEET 1 B 6 ILE A 139 LEU A 140 0 SHEET 2 B 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 B 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 B 6 TRP A 27 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 B 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 B 6 ILE A 308 LEU A 309 -1 O ILE A 308 N LEU A 287 SHEET 1 C 2 ILE A 144 ALA A 146 0 SHEET 2 C 2 LEU A 191 PHE A 193 -1 O VAL A 192 N LYS A 145 SHEET 1 D 6 TYR A 161 VAL A 166 0 SHEET 2 D 6 GLU A 169 THR A 177 -1 O VAL A 171 N LEU A 164 SHEET 3 D 6 ILE A 215 HIS A 220 1 O ILE A 216 N GLY A 172 SHEET 4 D 6 VAL A 238 VAL A 240 1 O VAL A 240 N ALA A 217 SHEET 5 D 6 LYS A 274 VAL A 278 1 O VAL A 278 N VAL A 239 SHEET 6 D 6 PHE A 265 THR A 268 -1 N VAL A 267 O VAL A 275 SHEET 1 E 3 THR A 405 THR A 407 0 SHEET 2 E 3 GLU A 338 THR A 342 -1 N LEU A 339 O ILE A 406 SHEET 3 E 3 VAL A 537 ILE A 538 1 O ILE A 538 N LYS A 341 SHEET 1 F 5 LEU A 450 GLY A 453 0 SHEET 2 F 5 MET A 386 ASN A 390 -1 N LEU A 389 O GLN A 451 SHEET 3 F 5 VAL A 492 PRO A 498 1 O ILE A 496 N MET A 386 SHEET 4 F 5 THR A 420 LYS A 427 -1 N LEU A 426 O TYR A 493 SHEET 5 F 5 ARG A 517 GLN A 523 -1 O ASP A 519 N LEU A 423 SHEET 1 G 4 TYR A 484 PRO A 486 0 SHEET 2 G 4 VAL A 469 LEU A 475 -1 N VAL A 474 O ASP A 485 SHEET 3 G 4 ILE A 455 TYR A 459 -1 N HIS A 456 O ASP A 473 SHEET 4 G 4 ILE A 546 PHE A 548 1 O LYS A 547 N TYR A 459 SSBOND 1 CYS A 57 CYS A 51 1555 1555 2.10 SSBOND 2 CYS A 358 CYS A 353 1555 1555 2.09 SSBOND 3 CYS A 387 CYS A 365 1555 1555 2.06 SSBOND 4 CYS A 479 CYS A 476 1555 1555 2.04 LINK ZN ZN A 601 O HOH A 772 1555 1555 1.96 LINK NE2 HIS A 220 ZN ZN A 601 1555 1555 2.04 LINK OD1 ASN A 117 ZN ZN A 601 1555 1555 2.04 LINK ZN ZN A 602 O HOH A 704 1555 1555 2.06 LINK OD1 ASP A 36 ZN ZN A 602 1555 1555 2.08 LINK ZN ZN A 602 O HOH A 772 1555 1555 2.09 LINK NE2 HIS A 38 ZN ZN A 602 1555 1555 2.15 LINK ND1 HIS A 243 ZN ZN A 601 1555 1555 2.16 LINK OD2 ASP A 85 ZN ZN A 602 1555 1555 2.16 LINK ZN ZN A 602 O HOH A 718 1555 1555 2.17 LINK O ASN A 213 CA CA A 604 1555 1555 2.32 LINK OD2 ASP A 85 ZN ZN A 601 1555 1555 2.35 LINK O GLY A 298 CA CA A 604 1555 1555 2.39 LINK CA CA A 604 O HOH A1206 1555 1555 2.40 LINK CA CA A 604 O HOH A 726 1555 1555 2.42 LINK OD2 ASP A 237 CA CA A 604 1555 1555 2.42 LINK OD1 ASP A 237 CA CA A 604 1555 1555 2.51 CISPEP 1 TYR A 263 PRO A 264 0 -10.59 SITE 1 AC1 7 ASP A 36 ASP A 85 ASN A 117 HIS A 220 SITE 2 AC1 7 HIS A 243 ZN A 602 HOH A 772 SITE 1 AC2 7 ASP A 36 HIS A 38 ASP A 85 ZN A 601 SITE 2 AC2 7 HOH A 704 HOH A 718 HOH A 772 SITE 1 AC3 13 ARG A 354 ASN A 390 GLY A 392 GLY A 393 SITE 2 AC3 13 ARG A 395 PHE A 417 GLY A 447 PHE A 500 SITE 3 AC3 13 ASP A 506 HOH A 818 HOH A1006 HOH A1131 SITE 4 AC3 13 HOH A1475 SITE 1 AC4 5 ASN A 213 ASP A 237 GLY A 298 HOH A 726 SITE 2 AC4 5 HOH A1206 SITE 1 AC5 4 PHE A 223 GLU A 224 HOH A 918 HOH A 931 CRYST1 67.100 131.000 66.010 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015149 0.00000