PDB Short entry for 4HHR HEADER OXIDOREDUCTASE 10-OCT-12 4HHR TITLE CRYSTAL STRUCTURE OF FATTY ACID ALPHA-DIOXYGENASE (ARABIDOPSIS TITLE 2 THALIANA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHADOX1 FATTY ACID DIOXYGENASE, FEEBLY-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: T13O15.6, ALPHADOX1, AT3G01420/T13O15.6, DOX1, AT3G01420, SOURCE 6 AT3G01420; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS CYCLOOXYGENASE MYELOPEROXIDASE FOLDING, FATTY ACID DIOXYGENASE, KEYWDS 2 CALCIUM BINDING, MONOTOPIC MEMBRANE PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.GOULAH,G.ZHU,M.KOSZELAK-ROSENBLUM,M.G.MALKOWSKI REVDAT 4 28-FEB-24 4HHR 1 REMARK HETSYN REVDAT 3 29-JUL-20 4HHR 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 28-AUG-13 4HHR 1 JRNL REVDAT 1 20-FEB-13 4HHR 0 JRNL AUTH C.C.GOULAH,G.ZHU,M.KOSZELAK-ROSENBLUM,M.G.MALKOWSKI JRNL TITL THE CRYSTAL STRUCTURE OF ALPHA-DIOXYGENASE PROVIDES INSIGHT JRNL TITL 2 INTO DIVERSITY IN THE CYCLOOXYGENASE-PEROXIDASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 52 1364 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23373518 JRNL DOI 10.1021/BI400013K REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 101577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 395 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 944 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.248 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5512 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7477 ; 1.427 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 673 ; 5.777 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 253 ;33.502 ;23.794 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 978 ;12.433 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 805 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4145 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3247 ; 1.333 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5290 ; 2.196 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2265 ; 3.236 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2171 ; 5.041 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 639 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7931 71.5352 15.4774 REMARK 3 T TENSOR REMARK 3 T11: 0.0379 T22: 0.0059 REMARK 3 T33: 0.0199 T12: 0.0058 REMARK 3 T13: 0.0193 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.2889 L22: 0.2788 REMARK 3 L33: 0.2326 L12: 0.0279 REMARK 3 L13: -0.0646 L23: -0.0949 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: -0.0040 S13: 0.0320 REMARK 3 S21: -0.0016 S22: 0.0198 S23: 0.0016 REMARK 3 S31: 0.0137 S32: -0.0063 S33: 0.0123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075481. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03319 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG400, 50MM TRIS, 0.2M CALCIUM REMARK 280 CHLORIDE, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.75500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.13250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.37750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.75500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.37750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.13250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 704 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1199 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1387 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 640 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1274 O HOH A 1670 1.92 REMARK 500 O HOH A 1097 O HOH A 1500 1.96 REMARK 500 O HOH A 1087 O HOH A 1377 2.02 REMARK 500 O HOH A 1019 O HOH A 1410 2.05 REMARK 500 O HOH A 1161 O HOH A 1686 2.08 REMARK 500 O HOH A 1123 O HOH A 1291 2.11 REMARK 500 NH1 ARG A 126 O HOH A 1291 2.13 REMARK 500 O HOH A 1301 O HOH A 1741 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1388 O HOH A 1388 8664 1.96 REMARK 500 OD1 ASP A 528 O HOH A 1309 3664 2.09 REMARK 500 O4 PGE A 716 O4 PGE A 716 6565 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 44 -120.56 -112.23 REMARK 500 PRO A 89 33.74 -82.91 REMARK 500 ASN A 98 -62.39 -94.94 REMARK 500 LYS A 141 -66.48 -90.78 REMARK 500 ASP A 321 -61.12 -123.27 REMARK 500 LEU A 327 77.36 -116.44 REMARK 500 ASP A 462 86.04 -150.96 REMARK 500 THR A 574 -100.11 -127.83 REMARK 500 THR A 583 158.05 70.57 REMARK 500 ASP A 622 30.71 -97.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 BNG A 714 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 164 OD1 REMARK 620 2 ASP A 164 O 75.6 REMARK 620 3 THR A 216 O 135.9 74.5 REMARK 620 4 THR A 216 OG1 151.8 123.6 72.2 REMARK 620 5 TRP A 218 O 84.2 118.4 82.3 100.7 REMARK 620 6 ASP A 220 OD1 80.2 148.6 136.5 73.9 78.0 REMARK 620 7 SER A 222 OG 84.0 77.3 119.4 81.2 157.1 80.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 706 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 294 OD2 REMARK 620 2 ASP A 296 OD2 88.5 REMARK 620 3 HOH A1162 O 86.6 87.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 389 NE2 REMARK 620 2 HEM A 701 NA 98.3 REMARK 620 3 HEM A 701 NB 92.0 90.1 REMARK 620 4 HEM A 701 NC 84.1 177.6 89.7 REMARK 620 5 HEM A 701 ND 90.2 89.3 177.8 90.8 REMARK 620 6 IMD A 702 N3 173.0 88.4 89.8 89.1 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 709 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 403 OD1 REMARK 620 2 HOH A1342 O 84.8 REMARK 620 3 HOH A1378 O 129.1 99.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 518 OE1 REMARK 620 2 GLU A 521 OE1 78.9 REMARK 620 3 HOH A1050 O 84.6 87.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 707 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 592 O REMARK 620 2 HOH A 989 O 75.5 REMARK 620 3 HOH A1714 O 102.2 108.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 710 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 606 OD1 REMARK 620 2 HOH A1223 O 62.4 REMARK 620 3 HOH A1418 O 75.9 99.1 REMARK 620 4 HOH A1520 O 106.7 80.9 177.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 708 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 622 OD2 REMARK 620 2 HOH A 901 O 76.6 REMARK 620 3 HOH A 962 O 71.7 101.5 REMARK 620 4 HOH A1008 O 143.5 77.1 89.3 REMARK 620 5 HOH A1171 O 121.4 82.8 166.9 79.6 REMARK 620 6 HOH A1365 O 125.9 148.5 71.0 72.4 98.8 REMARK 620 7 HOH A1420 O 67.2 119.6 110.3 149.1 77.4 91.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 705 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1068 O REMARK 620 2 HOH A1334 O 70.4 REMARK 620 3 HOH A1381 O 80.4 75.0 REMARK 620 4 HOH A1576 O 68.0 64.1 134.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HHS RELATED DB: PDB DBREF 4HHR A 1 639 UNP Q9SGH6 Q9SGH6_ARATH 1 639 SEQADV 4HHR MET A -11 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR ARG A -10 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR GLY A -9 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR SER A -8 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR HIS A -7 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR HIS A -6 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR HIS A -5 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR HIS A -4 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR HIS A -3 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR HIS A -2 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR GLY A -1 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR SER A 0 UNP Q9SGH6 EXPRESSION TAG SEQADV 4HHR ARG A 640 UNP Q9SGH6 EXPRESSION TAG SEQRES 1 A 652 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 652 LYS VAL ILE THR SER LEU ILE SER SER ILE LEU LEU LYS SEQRES 3 A 652 PHE ILE HIS LYS ASP PHE HIS GLU ILE TYR ALA ARG MET SEQRES 4 A 652 SER LEU LEU ASP ARG PHE LEU LEU LEU ILE VAL HIS GLY SEQRES 5 A 652 VAL ASP LYS MET VAL PRO TRP HIS LYS LEU PRO VAL PHE SEQRES 6 A 652 LEU GLY LEU THR TYR LEU GLU VAL ARG ARG HIS LEU HIS SEQRES 7 A 652 GLN GLN TYR ASN LEU LEU ASN VAL GLY GLN THR PRO THR SEQRES 8 A 652 GLY ILE ARG PHE ASP PRO ALA ASN TYR PRO TYR ARG THR SEQRES 9 A 652 ALA ASP GLY LYS PHE ASN ASP PRO PHE ASN GLU GLY VAL SEQRES 10 A 652 GLY SER GLN ASN SER PHE PHE GLY ARG ASN CYS PRO PRO SEQRES 11 A 652 VAL ASP GLN LYS SER LYS LEU ARG ARG PRO ASP PRO MET SEQRES 12 A 652 VAL VAL ALA THR LYS LEU LEU GLY ARG LYS LYS PHE ILE SEQRES 13 A 652 ASP THR GLY LYS GLN PHE ASN MET ILE ALA ALA SER TRP SEQRES 14 A 652 ILE GLN PHE MET ILE HIS ASP TRP ILE ASP HIS LEU GLU SEQRES 15 A 652 ASP THR HIS GLN ILE GLU LEU VAL ALA PRO LYS GLU VAL SEQRES 16 A 652 ALA SER LYS CYS PRO LEU SER SER PHE ARG PHE LEU LYS SEQRES 17 A 652 THR LYS GLU VAL PRO THR GLY PHE PHE GLU ILE LYS THR SEQRES 18 A 652 GLY SER GLN ASN ILE ARG THR PRO TRP TRP ASP SER SER SEQRES 19 A 652 VAL ILE TYR GLY SER ASN SER LYS THR LEU ASP ARG VAL SEQRES 20 A 652 ARG THR TYR LYS ASP GLY LYS LEU LYS ILE SER GLU GLU SEQRES 21 A 652 THR GLY LEU LEU LEU HIS ASP GLU ASP GLY LEU ALA ILE SEQRES 22 A 652 SER GLY ASP ILE ARG ASN SER TRP ALA GLY VAL SER ALA SEQRES 23 A 652 LEU GLN ALA LEU PHE ILE LYS GLU HIS ASN ALA VAL CYS SEQRES 24 A 652 ASP ALA LEU LYS ASP GLU ASP ASP ASP LEU GLU ASP GLU SEQRES 25 A 652 ASP LEU TYR ARG TYR ALA ARG LEU VAL THR SER ALA VAL SEQRES 26 A 652 VAL ALA LYS ILE HIS THR ILE ASP TRP THR VAL GLN LEU SEQRES 27 A 652 LEU LYS THR ASP THR LEU LEU ALA GLY MET ARG ALA ASN SEQRES 28 A 652 TRP TYR GLY LEU LEU GLY LYS LYS PHE LYS ASP SER PHE SEQRES 29 A 652 GLY HIS ALA GLY SER SER ILE LEU GLY GLY VAL VAL GLY SEQRES 30 A 652 MET LYS LYS PRO GLN ASN HIS GLY VAL PRO TYR SER LEU SEQRES 31 A 652 THR GLU ASP PHE THR SER VAL TYR ARG MET HIS SER LEU SEQRES 32 A 652 LEU PRO ASP GLN LEU HIS ILE LEU ASP ILE ASP ASP VAL SEQRES 33 A 652 PRO GLY THR ASN LYS SER LEU PRO LEU ILE GLN GLU ILE SEQRES 34 A 652 SER MET ARG ASP LEU ILE GLY ARG LYS GLY GLU GLU THR SEQRES 35 A 652 MET SER HIS ILE GLY PHE THR LYS LEU MET VAL SER MET SEQRES 36 A 652 GLY HIS GLN ALA SER GLY ALA LEU GLU LEU MET ASN TYR SEQRES 37 A 652 PRO MET TRP LEU ARG ASP ILE VAL PRO HIS ASP PRO ASN SEQRES 38 A 652 GLY GLN ALA ARG PRO ASP HIS VAL ASP LEU ALA ALA LEU SEQRES 39 A 652 GLU ILE TYR ARG ASP ARG GLU ARG SER VAL PRO ARG TYR SEQRES 40 A 652 ASN GLU PHE ARG ARG SER MET PHE MET ILE PRO ILE THR SEQRES 41 A 652 LYS TRP GLU ASP LEU THR GLU ASP GLU GLU ALA ILE GLU SEQRES 42 A 652 VAL LEU ASP ASP VAL TYR ASP GLY ASP VAL GLU GLU LEU SEQRES 43 A 652 ASP LEU LEU VAL GLY LEU MET ALA GLU LYS LYS ILE LYS SEQRES 44 A 652 GLY PHE ALA ILE SER GLU THR ALA PHE TYR ILE PHE LEU SEQRES 45 A 652 ILE MET ALA THR ARG ARG LEU GLU ALA ASP ARG PHE PHE SEQRES 46 A 652 THR SER ASP PHE ASN GLU THR ILE TYR THR LYS LYS GLY SEQRES 47 A 652 LEU GLU TRP VAL ASN THR THR GLU SER LEU LYS ASP VAL SEQRES 48 A 652 ILE ASP ARG HIS TYR PRO ASP MET THR ASP LYS TRP MET SEQRES 49 A 652 ASN SER GLU SER ALA PHE SER VAL TRP ASP SER PRO PRO SEQRES 50 A 652 LEU THR LYS ASN PRO ILE PRO LEU TYR LEU ARG ILE PRO SEQRES 51 A 652 SER ARG HET HEM A 701 43 HET IMD A 702 5 HET CA A 703 1 HET CA A 704 1 HET CA A 705 1 HET CA A 706 1 HET CA A 707 1 HET CA A 708 1 HET CA A 709 1 HET CA A 710 1 HET CL A 711 1 HET CL A 712 1 HET CL A 713 1 HET BNG A 714 21 HET P6G A 715 19 HET PGE A 716 10 HET PGE A 717 10 HET PGE A 718 10 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM IMD IMIDAZOLE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM BNG NONYL BETA-D-GLUCOPYRANOSIDE HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN HEM HEME HETSYN BNG BETA-NONYLGLUCOSIDE; NONYL BETA-D-GLUCOSIDE; NONYL D- HETSYN 2 BNG GLUCOSIDE; NONYL GLUCOSIDE HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 IMD C3 H5 N2 1+ FORMUL 4 CA 8(CA 2+) FORMUL 12 CL 3(CL 1-) FORMUL 15 BNG C15 H30 O6 FORMUL 16 P6G C12 H26 O7 FORMUL 17 PGE 3(C6 H14 O4) FORMUL 20 HOH *944(H2 O) HELIX 1 1 SER A 0 LEU A 13 1 14 HELIX 2 2 LYS A 14 ILE A 16 5 3 HELIX 3 3 HIS A 17 ASP A 19 5 3 HELIX 4 4 PHE A 20 ARG A 26 1 7 HELIX 5 5 SER A 28 MET A 44 1 17 HELIX 6 6 PRO A 46 LEU A 50 5 5 HELIX 7 7 PRO A 51 ASN A 70 1 20 HELIX 8 8 ASP A 84 TYR A 88 5 5 HELIX 9 9 GLN A 121 LEU A 125 5 5 HELIX 10 10 ASP A 129 LEU A 138 1 10 HELIX 11 11 ASN A 151 ILE A 166 1 16 HELIX 12 12 VAL A 183 CYS A 187 5 5 HELIX 13 13 SER A 221 GLY A 226 1 6 HELIX 14 14 ASN A 228 ARG A 236 1 9 HELIX 15 15 TRP A 269 ASP A 294 1 26 HELIX 16 16 GLU A 298 ASP A 321 1 24 HELIX 17 17 ASP A 321 LEU A 327 1 7 HELIX 18 18 THR A 329 GLY A 342 1 14 HELIX 19 19 GLY A 345 GLY A 353 1 9 HELIX 20 20 SER A 357 GLY A 362 1 6 HELIX 21 21 THR A 379 TYR A 386 1 8 HELIX 22 22 ARG A 387 LEU A 392 5 6 HELIX 23 23 GLY A 406 SER A 410 5 5 HELIX 24 24 ARG A 420 LEU A 422 5 3 HELIX 25 25 ILE A 423 GLY A 435 1 13 HELIX 26 26 GLY A 435 HIS A 445 1 11 HELIX 27 27 PRO A 457 ASP A 462 5 6 HELIX 28 28 ASP A 478 ARG A 490 1 13 HELIX 29 29 ARG A 494 MET A 502 1 9 HELIX 30 30 LYS A 509 LEU A 513 5 5 HELIX 31 31 ASP A 516 TYR A 527 1 12 HELIX 32 32 ASP A 535 GLU A 543 1 9 HELIX 33 33 SER A 552 ALA A 569 1 18 HELIX 34 34 ASP A 570 THR A 574 5 5 HELIX 35 35 ASN A 578 THR A 583 1 6 HELIX 36 36 THR A 583 THR A 593 1 11 HELIX 37 37 SER A 595 TYR A 604 1 10 HELIX 38 38 ASP A 606 MET A 612 1 7 HELIX 39 39 PRO A 632 ARG A 636 5 5 SHEET 1 A 2 GLU A 170 VAL A 178 0 SHEET 2 A 2 SER A 191 THR A 197 -1 O LYS A 196 N ASP A 171 SHEET 1 B 2 VAL A 200 PRO A 201 0 SHEET 2 B 2 THR A 209 GLY A 210 -1 O GLY A 210 N VAL A 200 SHEET 1 C 2 GLN A 395 LEU A 399 0 SHEET 2 C 2 LEU A 413 SER A 418 -1 O ILE A 414 N ILE A 398 LINK OD1 ASP A 164 CA CA A 703 1555 1555 2.23 LINK O ASP A 164 CA CA A 703 1555 1555 2.38 LINK O THR A 216 CA CA A 703 1555 1555 2.29 LINK OG1 THR A 216 CA CA A 703 1555 1555 2.47 LINK O TRP A 218 CA CA A 703 1555 1555 2.45 LINK OD1 ASP A 220 CA CA A 703 1555 1555 2.37 LINK OG SER A 222 CA CA A 703 1555 1555 2.43 LINK OD2 ASP A 294 CA CA A 706 1555 1555 2.39 LINK OD2 ASP A 296 CA CA A 706 1555 1555 2.51 LINK NE2 HIS A 389 FE HEM A 701 1555 1555 2.08 LINK OD1 ASP A 403 CA CA A 709 1555 1555 3.13 LINK OE1 GLU A 518 CA CA A 704 1555 1555 2.37 LINK OE1 GLU A 521 CA CA A 704 1555 1555 2.34 LINK O THR A 592 CA CA A 707 1555 1555 2.64 LINK OD1 ASP A 606 CA CA A 710 1555 1555 2.71 LINK OD2 ASP A 622 CA CA A 708 1555 1555 2.22 LINK FE HEM A 701 N3 IMD A 702 1555 1555 2.02 LINK CA CA A 704 O HOH A1050 1555 1555 2.30 LINK CA CA A 705 O HOH A1068 1555 1555 2.04 LINK CA CA A 705 O HOH A1334 1555 1555 2.25 LINK CA CA A 705 O HOH A1381 1555 1555 2.34 LINK CA CA A 705 O HOH A1576 1555 1555 2.61 LINK CA CA A 706 O HOH A1162 1555 1555 2.74 LINK CA CA A 707 O HOH A 989 1555 1555 3.13 LINK CA CA A 707 O HOH A1714 1555 1555 2.45 LINK CA CA A 708 O HOH A 901 1555 1555 2.24 LINK CA CA A 708 O HOH A 962 1555 1555 2.70 LINK CA CA A 708 O HOH A1008 1555 1555 2.43 LINK CA CA A 708 O HOH A1171 1555 1555 2.64 LINK CA CA A 708 O HOH A1365 1555 1555 2.27 LINK CA CA A 708 O HOH A1420 1555 1555 2.44 LINK CA CA A 709 O HOH A1342 1555 1555 2.49 LINK CA CA A 709 O HOH A1378 1555 1555 2.50 LINK CA CA A 710 O HOH A1223 1555 1555 2.35 LINK CA CA A 710 O HOH A1418 1555 1555 2.28 LINK CA CA A 710 O HOH A1520 1555 1555 2.20 CISPEP 1 ARG A 127 PRO A 128 0 -9.91 CRYST1 101.935 101.935 137.510 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007272 0.00000