PDB Short entry for 4HXD HEADER HYDROLASE/VIRAL PROTEIN 09-NOV-12 4HXD TITLE DIVERSITY OF UBIQUITIN AND ISG15 SPECIFICITY AMONGST NAIROVIRUSES TITLE 2 VIRAL OVARIAN TUMOR DOMAIN PROTEASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYUBIQUITIN-C; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: UBIQUITIN; COMPND 5 EC: 3.4.19.12; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA-DIRECTED RNA POLYMERASE L; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: PROTEIN L, LARGE STRUCTURAL PROTEIN, REPLICASE, COMPND 11 TRANSCRIPTASE, UBIQUITIN THIOESTERASE, RNA-DIRECTED RNA POLYMERASE; COMPND 12 EC: 3.4.19.12, 2.7.7.48; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB2; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: DUGBE VIRUS (ISOLATE ARD44313); SOURCE 13 ORGANISM_COMMON: DUGV; SOURCE 14 ORGANISM_TAXID: 766194; SOURCE 15 GENE: L; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS OTU-LIKE CYSTEINE PROTEASE, DUGBE VIRUS, DEUBIQUITINASE, 3- KEYWDS 2 AMINOPROPANE, UBIQUITIN HYDROLASE, VIRAL PROTEIN, HYDROLASE, KEYWDS 3 UBIQUITIN., HYDROLASE-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.C.CAPODAGLI,S.D.PEGAN REVDAT 4 03-APR-24 4HXD 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM FORMUL LINK ATOM REVDAT 3 15-NOV-17 4HXD 1 REMARK REVDAT 2 24-APR-13 4HXD 1 JRNL REVDAT 1 13-FEB-13 4HXD 0 JRNL AUTH G.C.CAPODAGLI,M.K.DEATON,E.A.BAKER,R.J.LUMPKIN,S.D.PEGAN JRNL TITL DIVERSITY OF UBIQUITIN AND ISG15 SPECIFICITY AMONG JRNL TITL 2 NAIROVIRUSES' VIRAL OVARIAN TUMOR DOMAIN PROTEASES. JRNL REF J.VIROL. V. 87 3815 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23345508 JRNL DOI 10.1128/JVI.03252-12 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 11868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 567 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.470 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.347 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.255 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.893 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.817 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3792 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5125 ; 1.154 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 459 ; 5.675 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;36.718 ;24.629 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;19.125 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.770 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2802 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4HXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11887 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.14100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M LISO4, 0.10 M BIS-TRIS, 29% PEG REMARK 280 3350, 40% (V/V) 1,3-BUTANEDIOL , PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.75400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.99550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.75400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.99550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 159 REMARK 465 GLN B 160 REMARK 465 LEU B 161 REMARK 465 GLU B 162 REMARK 465 ASN B 163 REMARK 465 ASN B 164 REMARK 465 GLN B 165 REMARK 465 PRO B 166 REMARK 465 GLN B 167 REMARK 465 ASP B 168 REMARK 465 ARG B 169 REMARK 465 HIS B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 ASP D 2 REMARK 465 GLU D 159 REMARK 465 GLN D 160 REMARK 465 LEU D 161 REMARK 465 GLU D 162 REMARK 465 ASN D 163 REMARK 465 ASN D 164 REMARK 465 GLN D 165 REMARK 465 PRO D 166 REMARK 465 GLN D 167 REMARK 465 ASP D 168 REMARK 465 ARG D 169 REMARK 465 HIS D 170 REMARK 465 HIS D 171 REMARK 465 HIS D 172 REMARK 465 HIS D 173 REMARK 465 HIS D 174 REMARK 465 HIS D 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY C 75 N1 4LJ C 101 2.00 REMARK 500 O GLY A 75 N1 4LJ A 101 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 -9.39 -56.39 REMARK 500 ALA A 46 -0.93 67.60 REMARK 500 LYS A 63 -119.95 45.63 REMARK 500 GLU A 64 25.04 -78.99 REMARK 500 ASP B 14 60.98 34.41 REMARK 500 ASN B 97 17.58 57.04 REMARK 500 THR B 150 2.11 -151.40 REMARK 500 ASP D 14 -103.61 35.18 REMARK 500 SER D 26 -8.21 -59.10 REMARK 500 THR D 124 35.58 -93.31 REMARK 500 ALA D 129 156.03 168.36 REMARK 500 ARG D 149 8.60 58.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 3-AMINOPROPANE WAS COVALENTLY ADDED TO THE C-TERMINUS OF UBIQUITIN REMARK 600 THROUGH USE OF INTERN CHEMISTRY BY COMPLEXING THE THIOESTERIFIED REMARK 600 UBIQUITIN PROTEIN TOGETHER WITH 3-BROMOPROPYLAMINE AS PER WILKINSON, REMARK 600 K. D., T. GAN-ERDENE, AND N. KOLLI. 2005. DERIVITIZATION OF THE C- REMARK 600 TERMINUS OF UBIQUITIN AND UBIQUITIN-LIKE PROTEINS USING INTEIN REMARK 600 CHEMISTRY: METHODS AND USES. METHODS ENZYMOL 399:37-51. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4LJ A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4LJ C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 201 DBREF 4HXD A 1 75 UNP P0CG48 UBC_HUMAN 1 75 DBREF 4HXD B 2 169 UNP Q66431 L_DUGBA 2 169 DBREF 4HXD C 1 75 UNP P0CG48 UBC_HUMAN 1 75 DBREF 4HXD D 2 169 UNP Q66431 L_DUGBA 2 169 SEQADV 4HXD HIS B 170 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS B 171 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS B 172 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS B 173 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS B 174 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS B 175 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS D 170 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS D 171 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS D 172 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS D 173 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS D 174 UNP Q66431 EXPRESSION TAG SEQADV 4HXD HIS D 175 UNP Q66431 EXPRESSION TAG SEQRES 1 A 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 1 B 174 ASP PHE LEU ASP SER LEU ILE TRP GLU ARG VAL VAL ASP SEQRES 2 B 174 GLU GLN TYR ILE THR ASN PRO THR PHE CYS VAL SER ASP SEQRES 3 B 174 TYR PHE GLU VAL ILE ARG GLN PRO GLY ASP GLY ASN CYS SEQRES 4 B 174 PHE TYR HIS SER ILE ALA GLU LEU PHE PHE ASP VAL LYS SEQRES 5 B 174 THR PRO SER SER PHE ARG LYS VAL LYS GLU HIS LEU GLN SEQRES 6 B 174 LEU ALA ALA GLU VAL TYR TYR ASP THR GLU PRO GLU ALA SEQRES 7 B 174 VAL GLY THR GLY ILE SER LYS ASP GLU TYR ILE LYS VAL SEQRES 8 B 174 ALA MET LYS ASP ASN GLU TRP GLY GLY SER LEU GLU ALA SEQRES 9 B 174 SER MET LEU SER LYS HIS LEU GLN THR THR ILE ILE LEU SEQRES 10 B 174 TRP VAL VAL ASN SER THR GLU GLN VAL THR ALA ALA ILE SEQRES 11 B 174 LYS PHE GLY PRO GLY ARG VAL SER THR ALA LEU ASN LEU SEQRES 12 B 174 MET HIS VAL GLY ARG THR HIS PHE ASP ALA LEU ARG ILE SEQRES 13 B 174 ILE GLU GLN LEU GLU ASN ASN GLN PRO GLN ASP ARG HIS SEQRES 14 B 174 HIS HIS HIS HIS HIS SEQRES 1 C 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 1 D 174 ASP PHE LEU ASP SER LEU ILE TRP GLU ARG VAL VAL ASP SEQRES 2 D 174 GLU GLN TYR ILE THR ASN PRO THR PHE CYS VAL SER ASP SEQRES 3 D 174 TYR PHE GLU VAL ILE ARG GLN PRO GLY ASP GLY ASN CYS SEQRES 4 D 174 PHE TYR HIS SER ILE ALA GLU LEU PHE PHE ASP VAL LYS SEQRES 5 D 174 THR PRO SER SER PHE ARG LYS VAL LYS GLU HIS LEU GLN SEQRES 6 D 174 LEU ALA ALA GLU VAL TYR TYR ASP THR GLU PRO GLU ALA SEQRES 7 D 174 VAL GLY THR GLY ILE SER LYS ASP GLU TYR ILE LYS VAL SEQRES 8 D 174 ALA MET LYS ASP ASN GLU TRP GLY GLY SER LEU GLU ALA SEQRES 9 D 174 SER MET LEU SER LYS HIS LEU GLN THR THR ILE ILE LEU SEQRES 10 D 174 TRP VAL VAL ASN SER THR GLU GLN VAL THR ALA ALA ILE SEQRES 11 D 174 LYS PHE GLY PRO GLY ARG VAL SER THR ALA LEU ASN LEU SEQRES 12 D 174 MET HIS VAL GLY ARG THR HIS PHE ASP ALA LEU ARG ILE SEQRES 13 D 174 ILE GLU GLN LEU GLU ASN ASN GLN PRO GLN ASP ARG HIS SEQRES 14 D 174 HIS HIS HIS HIS HIS HET 4LJ A 101 4 HET SO4 A 102 5 HET 4LJ C 101 4 HET SO4 C 102 5 HET SO4 D 201 5 HETNAM 4LJ 1.7.6 3-BROMANYLPROPAN-1-AMINE HETNAM SO4 SULFATE ION FORMUL 5 4LJ 2(C3 H8 BR N) FORMUL 6 SO4 3(O4 S 2-) FORMUL 10 HOH *46(H2 O) HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 PRO A 37 ASP A 39 5 3 HELIX 3 3 LEU A 56 ASN A 60 5 5 HELIX 4 4 PHE B 3 LEU B 7 1 5 HELIX 5 5 VAL B 25 TYR B 28 1 4 HELIX 6 6 ASN B 39 PHE B 50 1 12 HELIX 7 7 SER B 57 TYR B 73 1 17 HELIX 8 8 GLU B 76 GLY B 81 1 6 HELIX 9 9 SER B 85 MET B 94 1 10 HELIX 10 10 SER B 102 LEU B 112 1 11 HELIX 11 11 THR C 22 GLY C 35 1 14 HELIX 12 12 PRO C 37 ASP C 39 5 3 HELIX 13 13 PHE D 3 LEU D 7 5 5 HELIX 14 14 ASN D 39 PHE D 50 1 12 HELIX 15 15 SER D 57 TYR D 73 1 17 HELIX 16 16 GLU D 76 GLY D 83 1 8 HELIX 17 17 SER D 85 MET D 94 1 10 HELIX 18 18 SER D 102 LEU D 112 1 11 SHEET 1 A 5 THR A 12 GLU A 16 0 SHEET 2 A 5 GLN A 2 LYS A 6 -1 N ILE A 3 O LEU A 15 SHEET 3 A 5 THR A 66 LEU A 71 1 O LEU A 69 N LYS A 6 SHEET 4 A 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 A 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 B 2 ARG A 74 GLY A 75 0 SHEET 2 B 2 GLY B 100 GLY B 101 -1 O GLY B 100 N GLY A 75 SHEET 1 C 4 GLU B 10 VAL B 13 0 SHEET 2 C 4 GLN B 16 THR B 19 -1 O ILE B 18 N GLU B 10 SHEET 3 C 4 GLN B 126 PHE B 133 -1 O LYS B 132 N TYR B 17 SHEET 4 C 4 PHE B 23 CYS B 24 -1 N PHE B 23 O VAL B 127 SHEET 1 D 7 GLU B 10 VAL B 13 0 SHEET 2 D 7 GLN B 16 THR B 19 -1 O ILE B 18 N GLU B 10 SHEET 3 D 7 GLN B 126 PHE B 133 -1 O LYS B 132 N TYR B 17 SHEET 4 D 7 ILE B 116 VAL B 121 -1 N LEU B 118 O ILE B 131 SHEET 5 D 7 LEU B 142 HIS B 146 1 O LEU B 144 N TRP B 119 SHEET 6 D 7 PHE B 152 ILE B 157 -1 O ASP B 153 N MET B 145 SHEET 7 D 7 PHE B 29 ILE B 32 -1 N GLU B 30 O ARG B 156 SHEET 1 E 5 THR C 12 GLU C 16 0 SHEET 2 E 5 GLN C 2 THR C 7 -1 N ILE C 3 O LEU C 15 SHEET 3 E 5 THR C 66 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 E 5 GLN C 41 PHE C 45 -1 N ILE C 44 O HIS C 68 SHEET 5 E 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 F 2 ARG C 74 GLY C 75 0 SHEET 2 F 2 GLY D 100 GLY D 101 -1 O GLY D 100 N GLY C 75 SHEET 1 G 4 GLU D 10 VAL D 13 0 SHEET 2 G 4 GLN D 16 THR D 19 -1 O GLN D 16 N VAL D 13 SHEET 3 G 4 GLN D 126 PHE D 133 -1 O LYS D 132 N TYR D 17 SHEET 4 G 4 PHE D 23 CYS D 24 -1 N PHE D 23 O VAL D 127 SHEET 1 H 7 GLU D 10 VAL D 13 0 SHEET 2 H 7 GLN D 16 THR D 19 -1 O GLN D 16 N VAL D 13 SHEET 3 H 7 GLN D 126 PHE D 133 -1 O LYS D 132 N TYR D 17 SHEET 4 H 7 ILE D 116 VAL D 121 -1 N VAL D 120 O ALA D 129 SHEET 5 H 7 LEU D 142 VAL D 147 1 O HIS D 146 N TRP D 119 SHEET 6 H 7 HIS D 151 ILE D 157 -1 O HIS D 151 N VAL D 147 SHEET 7 H 7 PHE D 29 ILE D 32 -1 N GLU D 30 O ARG D 156 LINK C GLY A 75 N1 4LJ A 101 1555 1555 1.33 LINK C1 4LJ A 101 SG CYS B 40 1555 1555 1.81 LINK C GLY C 75 N1 4LJ C 101 1555 1555 1.35 LINK C1 4LJ C 101 SG CYS D 40 1555 1555 1.82 SITE 1 AC1 5 GLY A 75 GLY B 38 CYS B 40 TRP B 99 SITE 2 AC1 5 THR B 150 SITE 1 AC2 4 THR A 9 LYS A 11 LYS B 91 SER B 123 SITE 1 AC3 6 GLY C 75 GLY D 38 CYS D 40 TRP D 99 SITE 2 AC3 6 THR D 150 HIS D 151 SITE 1 AC4 3 ARG C 74 GLU D 98 TRP D 99 SITE 1 AC5 4 THR C 9 LYS C 11 LYS D 91 SER D 123 CRYST1 113.508 39.991 114.189 90.00 97.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008810 0.000000 0.001133 0.00000 SCALE2 0.000000 0.025006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008830 0.00000