PDB Short entry for 4IGF HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 17-DEC-12 4IGF TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM FABI COMPLEXED WITH NAD AND TITLE 2 INHIBITOR 3-(4-CHLORO-2-HYDROXYPHENOXY)-7-HYDROXY-2H-CHROMEN-2-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-ACYL CARRIER REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL FRAGMENT, UNP RESIDUES 96-432; COMPND 5 EC: 1.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PFENR, PFF0730C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS REDUCTASE, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.KOSTREWA,R.PEROZZO REVDAT 3 08-NOV-23 4IGF 1 REMARK SEQADV REVDAT 2 15-NOV-17 4IGF 1 REMARK REVDAT 1 06-NOV-13 4IGF 0 JRNL AUTH F.BELLUTI,R.PEROZZO,L.LAUCIELLO,F.COLIZZI,D.KOSTREWA,A.BISI, JRNL AUTH 2 S.GOBBI,A.RAMPA,M.L.BOLOGNESI,M.RECANATINI,R.BRUN, JRNL AUTH 3 L.SCAPOZZA,A.CAVALLI JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL AND CRYSTALLOGRAPHIC JRNL TITL 2 EVALUATION OF NOVEL INHIBITORS OF PLASMODIUM FALCIPARUM JRNL TITL 3 ENOYL-ACP-REDUCTASE (PFFABI) JRNL REF J.MED.CHEM. V. 56 7516 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 24063369 JRNL DOI 10.1021/JM400637M REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.0079 - 5.2652 1.00 2795 135 0.1728 0.1933 REMARK 3 2 5.2652 - 4.1793 1.00 2654 136 0.1181 0.1435 REMARK 3 3 4.1793 - 3.6510 1.00 2605 140 0.1189 0.1699 REMARK 3 4 3.6510 - 3.3172 1.00 2589 137 0.1386 0.2029 REMARK 3 5 3.3172 - 3.0795 1.00 2600 132 0.1525 0.1811 REMARK 3 6 3.0795 - 2.8979 1.00 2569 134 0.1641 0.2554 REMARK 3 7 2.8979 - 2.7528 1.00 2559 122 0.1671 0.2317 REMARK 3 8 2.7528 - 2.6329 1.00 2535 156 0.1704 0.2308 REMARK 3 9 2.6329 - 2.5316 1.00 2553 154 0.1768 0.2532 REMARK 3 10 2.5316 - 2.4442 1.00 2525 144 0.1919 0.2391 REMARK 3 11 2.4442 - 2.3678 1.00 2558 128 0.2035 0.3232 REMARK 3 12 2.3678 - 2.3001 1.00 2541 143 0.2052 0.2640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4751 REMARK 3 ANGLE : 1.388 6431 REMARK 3 CHIRALITY : 0.095 704 REMARK 3 PLANARITY : 0.006 845 REMARK 3 DIHEDRAL : 14.219 1814 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 44.1349 84.8046 37.8659 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.0693 REMARK 3 T33: 0.0802 T12: 0.0040 REMARK 3 T13: -0.0272 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.4225 L22: 0.5422 REMARK 3 L33: 0.6471 L12: -0.2285 REMARK 3 L13: 0.1491 L23: -0.3019 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.0539 S13: -0.0277 REMARK 3 S21: 0.1096 S22: -0.0133 S23: -0.0781 REMARK 3 S31: 0.0103 S32: 0.0865 S33: -0.0295 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 14.4456 102.7502 34.7069 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.1203 REMARK 3 T33: 0.0711 T12: -0.0023 REMARK 3 T13: 0.0098 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.8773 L22: 0.6127 REMARK 3 L33: 0.1943 L12: -0.4493 REMARK 3 L13: 0.0326 L23: -0.0069 REMARK 3 S TENSOR REMARK 3 S11: -0.0636 S12: -0.1373 S13: -0.0891 REMARK 3 S21: 0.0879 S22: 0.0722 S23: 0.1292 REMARK 3 S31: 0.0204 S32: -0.1363 S33: 0.0086 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MASK BULK SOLVENT MODEL. REMARK 3 MAXIMUM-LIKELHOOD BASED COORDINATE ERROR 0.25 A. REMARK 4 REMARK 4 4IGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32749 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.73 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.91 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.09000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1NHG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 2.35M AMMONIUM SULFATE, PH REMARK 280 5.6, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.31750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 65.77800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 65.77800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.97625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 65.77800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 65.77800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.65875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 65.77800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.77800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.97625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 65.77800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.77800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.65875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.31750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 88 REMARK 465 VAL A 89 REMARK 465 HIS A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 ASN A 96 REMARK 465 GLU A 179 REMARK 465 ARG A 318 REMARK 465 ALA A 319 REMARK 465 ALA A 320 REMARK 465 THR A 321 REMARK 465 ALA A 322 REMARK 465 ILE A 323 REMARK 465 ASN A 324 REMARK 465 LYS A 325 REMARK 465 LEU A 326 REMARK 465 ASN A 327 REMARK 465 ASN A 328 REMARK 465 THR A 329 REMARK 465 TYR A 330 REMARK 465 GLU A 331 REMARK 465 ASN A 332 REMARK 465 ASN A 333 REMARK 465 THR A 334 REMARK 465 ASN A 335 REMARK 465 GLN A 336 REMARK 465 ASN A 337 REMARK 465 LYS A 338 REMARK 465 ASN A 339 REMARK 465 ARG A 340 REMARK 465 ASN A 341 REMARK 465 SER A 342 REMARK 465 HIS A 343 REMARK 465 ASP A 344 REMARK 465 VAL A 345 REMARK 465 HIS A 346 REMARK 465 ASN A 347 REMARK 465 ILE A 348 REMARK 465 MET A 349 REMARK 465 ASN A 350 REMARK 465 ASN A 351 REMARK 465 SER A 352 REMARK 465 GLY A 353 REMARK 465 GLU A 354 REMARK 465 LYS A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 LYS A 358 REMARK 465 LYS A 359 REMARK 465 ASN A 360 REMARK 465 SER A 361 REMARK 465 ALA A 362 REMARK 465 SER A 363 REMARK 465 GLN A 364 REMARK 465 ASN A 365 REMARK 465 TYR A 366 REMARK 465 THR A 367 REMARK 465 ASP A 425 REMARK 465 ILE A 426 REMARK 465 TYR A 427 REMARK 465 ARG A 428 REMARK 465 ASN A 429 REMARK 465 GLU A 430 REMARK 465 ASN A 431 REMARK 465 GLU A 432 REMARK 465 MET B 88 REMARK 465 VAL B 89 REMARK 465 HIS B 90 REMARK 465 HIS B 91 REMARK 465 HIS B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 ASN B 96 REMARK 465 LEU B 326 REMARK 465 ASN B 327 REMARK 465 ASN B 328 REMARK 465 THR B 329 REMARK 465 TYR B 330 REMARK 465 GLU B 331 REMARK 465 ASN B 332 REMARK 465 ASN B 333 REMARK 465 THR B 334 REMARK 465 ASN B 335 REMARK 465 GLN B 336 REMARK 465 ASN B 337 REMARK 465 LYS B 338 REMARK 465 ASN B 339 REMARK 465 ARG B 340 REMARK 465 ASN B 341 REMARK 465 SER B 342 REMARK 465 HIS B 343 REMARK 465 ASP B 344 REMARK 465 VAL B 345 REMARK 465 HIS B 346 REMARK 465 ASN B 347 REMARK 465 ILE B 348 REMARK 465 MET B 349 REMARK 465 ASN B 350 REMARK 465 ASN B 351 REMARK 465 SER B 352 REMARK 465 GLY B 353 REMARK 465 GLU B 354 REMARK 465 LYS B 355 REMARK 465 GLU B 356 REMARK 465 GLU B 357 REMARK 465 LYS B 358 REMARK 465 LYS B 359 REMARK 465 ASN B 360 REMARK 465 SER B 361 REMARK 465 ALA B 362 REMARK 465 SER B 363 REMARK 465 GLN B 364 REMARK 465 ASN B 365 REMARK 465 TYR B 366 REMARK 465 ASP B 425 REMARK 465 ILE B 426 REMARK 465 TYR B 427 REMARK 465 ARG B 428 REMARK 465 ASN B 429 REMARK 465 GLU B 430 REMARK 465 ASN B 431 REMARK 465 GLU B 432 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 111 O GLY A 313 2.14 REMARK 500 O1A NAD A 502 O HOH A 691 2.18 REMARK 500 OE2 GLU A 402 NH2 ARG B 122 2.18 REMARK 500 OD2 ASP A 424 OH TYR B 297 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 315 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 316 75.06 69.71 REMARK 500 ASP A 414 26.87 -157.06 REMARK 500 PHE A 421 -72.04 -110.59 REMARK 500 ASP B 107 -166.95 -175.14 REMARK 500 SER B 242 -55.90 -120.35 REMARK 500 ASP B 414 29.50 -155.24 REMARK 500 PHE B 421 -70.16 -101.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHV A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHV B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IGE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM FABI COMPLEXED WITH NAD REMARK 900 AND INHIBITOR 7-(4-CHLORO-2-HYDROXYPHENOXY)-4-METHYL-2H-CHROMEN-2- REMARK 900 ONE DBREF 4IGF A 96 432 UNP C6KSZ2 C6KSZ2_PLAF7 96 432 DBREF 4IGF B 96 432 UNP C6KSZ2 C6KSZ2_PLAF7 96 432 SEQADV 4IGF MET A 88 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF VAL A 89 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS A 90 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS A 91 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS A 92 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS A 93 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS A 94 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS A 95 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF MET B 88 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF VAL B 89 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS B 90 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS B 91 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS B 92 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS B 93 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS B 94 UNP C6KSZ2 EXPRESSION TAG SEQADV 4IGF HIS B 95 UNP C6KSZ2 EXPRESSION TAG SEQRES 1 A 345 MET VAL HIS HIS HIS HIS HIS HIS ASN GLU ASP ILE CYS SEQRES 2 A 345 PHE ILE ALA GLY ILE GLY ASP THR ASN GLY TYR GLY TRP SEQRES 3 A 345 GLY ILE ALA LYS GLU LEU SER LYS ARG ASN VAL LYS ILE SEQRES 4 A 345 ILE PHE GLY ILE TRP PRO PRO VAL TYR ASN ILE PHE MET SEQRES 5 A 345 LYS ASN TYR LYS ASN GLY LYS PHE ASP ASN ASP MET ILE SEQRES 6 A 345 ILE ASP LYS ASP LYS LYS MET ASN ILE LEU ASP MET LEU SEQRES 7 A 345 PRO PHE ASP ALA SER PHE ASP THR ALA ASN ASP ILE ASP SEQRES 8 A 345 GLU GLU THR LYS ASN ASN LYS ARG TYR ASN MET LEU GLN SEQRES 9 A 345 ASN TYR THR ILE GLU ASP VAL ALA ASN LEU ILE HIS GLN SEQRES 10 A 345 LYS TYR GLY LYS ILE ASN MET LEU VAL HIS SER LEU ALA SEQRES 11 A 345 ASN ALA LYS GLU VAL GLN LYS ASP LEU LEU ASN THR SER SEQRES 12 A 345 ARG LYS GLY TYR LEU ASP ALA LEU SER LYS SER SER TYR SEQRES 13 A 345 SER LEU ILE SER LEU CYS LYS TYR PHE VAL ASN ILE MET SEQRES 14 A 345 LYS PRO GLN SER SER ILE ILE SER LEU THR TYR HIS ALA SEQRES 15 A 345 SER GLN LYS VAL VAL PRO GLY TYR GLY GLY GLY MET SER SEQRES 16 A 345 SER ALA LYS ALA ALA LEU GLU SER ASP THR ARG VAL LEU SEQRES 17 A 345 ALA TYR HIS LEU GLY ARG ASN TYR ASN ILE ARG ILE ASN SEQRES 18 A 345 THR ILE SER ALA GLY PRO LEU LYS SER ARG ALA ALA THR SEQRES 19 A 345 ALA ILE ASN LYS LEU ASN ASN THR TYR GLU ASN ASN THR SEQRES 20 A 345 ASN GLN ASN LYS ASN ARG ASN SER HIS ASP VAL HIS ASN SEQRES 21 A 345 ILE MET ASN ASN SER GLY GLU LYS GLU GLU LYS LYS ASN SEQRES 22 A 345 SER ALA SER GLN ASN TYR THR PHE ILE ASP TYR ALA ILE SEQRES 23 A 345 GLU TYR SER GLU LYS TYR ALA PRO LEU ARG GLN LYS LEU SEQRES 24 A 345 LEU SER THR ASP ILE GLY SER VAL ALA SER PHE LEU LEU SEQRES 25 A 345 SER ARG GLU SER ARG ALA ILE THR GLY GLN THR ILE TYR SEQRES 26 A 345 VAL ASP ASN GLY LEU ASN ILE MET PHE LEU PRO ASP ASP SEQRES 27 A 345 ILE TYR ARG ASN GLU ASN GLU SEQRES 1 B 345 MET VAL HIS HIS HIS HIS HIS HIS ASN GLU ASP ILE CYS SEQRES 2 B 345 PHE ILE ALA GLY ILE GLY ASP THR ASN GLY TYR GLY TRP SEQRES 3 B 345 GLY ILE ALA LYS GLU LEU SER LYS ARG ASN VAL LYS ILE SEQRES 4 B 345 ILE PHE GLY ILE TRP PRO PRO VAL TYR ASN ILE PHE MET SEQRES 5 B 345 LYS ASN TYR LYS ASN GLY LYS PHE ASP ASN ASP MET ILE SEQRES 6 B 345 ILE ASP LYS ASP LYS LYS MET ASN ILE LEU ASP MET LEU SEQRES 7 B 345 PRO PHE ASP ALA SER PHE ASP THR ALA ASN ASP ILE ASP SEQRES 8 B 345 GLU GLU THR LYS ASN ASN LYS ARG TYR ASN MET LEU GLN SEQRES 9 B 345 ASN TYR THR ILE GLU ASP VAL ALA ASN LEU ILE HIS GLN SEQRES 10 B 345 LYS TYR GLY LYS ILE ASN MET LEU VAL HIS SER LEU ALA SEQRES 11 B 345 ASN ALA LYS GLU VAL GLN LYS ASP LEU LEU ASN THR SER SEQRES 12 B 345 ARG LYS GLY TYR LEU ASP ALA LEU SER LYS SER SER TYR SEQRES 13 B 345 SER LEU ILE SER LEU CYS LYS TYR PHE VAL ASN ILE MET SEQRES 14 B 345 LYS PRO GLN SER SER ILE ILE SER LEU THR TYR HIS ALA SEQRES 15 B 345 SER GLN LYS VAL VAL PRO GLY TYR GLY GLY GLY MET SER SEQRES 16 B 345 SER ALA LYS ALA ALA LEU GLU SER ASP THR ARG VAL LEU SEQRES 17 B 345 ALA TYR HIS LEU GLY ARG ASN TYR ASN ILE ARG ILE ASN SEQRES 18 B 345 THR ILE SER ALA GLY PRO LEU LYS SER ARG ALA ALA THR SEQRES 19 B 345 ALA ILE ASN LYS LEU ASN ASN THR TYR GLU ASN ASN THR SEQRES 20 B 345 ASN GLN ASN LYS ASN ARG ASN SER HIS ASP VAL HIS ASN SEQRES 21 B 345 ILE MET ASN ASN SER GLY GLU LYS GLU GLU LYS LYS ASN SEQRES 22 B 345 SER ALA SER GLN ASN TYR THR PHE ILE ASP TYR ALA ILE SEQRES 23 B 345 GLU TYR SER GLU LYS TYR ALA PRO LEU ARG GLN LYS LEU SEQRES 24 B 345 LEU SER THR ASP ILE GLY SER VAL ALA SER PHE LEU LEU SEQRES 25 B 345 SER ARG GLU SER ARG ALA ILE THR GLY GLN THR ILE TYR SEQRES 26 B 345 VAL ASP ASN GLY LEU ASN ILE MET PHE LEU PRO ASP ASP SEQRES 27 B 345 ILE TYR ARG ASN GLU ASN GLU HET CHV A 501 21 HET NAD A 502 44 HET GOL A 503 6 HET CHV B 501 21 HET NAD B 502 44 HET SO4 B 503 5 HET SO4 B 504 5 HET GOL B 505 6 HET GOL B 506 6 HETNAM CHV 3-(4-CHLORO-2-HYDROXYPHENOXY)-7-HYDROXY-2H-CHROMEN-2- HETNAM 2 CHV ONE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CHV 2(C15 H9 CL O5) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 SO4 2(O4 S 2-) FORMUL 12 HOH *243(H2 O) HELIX 1 1 GLY A 110 ARG A 122 1 13 HELIX 2 2 TRP A 131 ASN A 144 1 14 HELIX 3 3 ASP A 148 ILE A 152 5 5 HELIX 4 4 THR A 173 ILE A 177 5 5 HELIX 5 5 GLU A 180 ASN A 184 5 5 HELIX 6 6 THR A 194 GLY A 207 1 14 HELIX 7 7 ASP A 225 THR A 229 5 5 HELIX 8 8 SER A 230 SER A 242 1 13 HELIX 9 9 SER A 242 VAL A 253 1 12 HELIX 10 10 TYR A 267 GLN A 271 5 5 HELIX 11 11 GLY A 280 ASN A 304 1 25 HELIX 12 12 ILE A 369 ALA A 380 1 12 HELIX 13 13 LEU A 387 LEU A 399 1 13 HELIX 14 14 SER A 400 ARG A 404 5 5 HELIX 15 15 GLY A 416 MET A 420 5 5 HELIX 16 16 GLY B 110 ARG B 122 1 13 HELIX 17 17 TRP B 131 ASN B 144 1 14 HELIX 18 18 THR B 173 ILE B 177 5 5 HELIX 19 19 ASP B 178 ASN B 184 1 7 HELIX 20 20 THR B 194 GLY B 207 1 14 HELIX 21 21 ASP B 225 THR B 229 5 5 HELIX 22 22 SER B 230 SER B 242 1 13 HELIX 23 23 SER B 242 VAL B 253 1 12 HELIX 24 24 TYR B 267 GLN B 271 5 5 HELIX 25 25 GLY B 280 ASN B 304 1 25 HELIX 26 26 SER B 317 ILE B 323 1 7 HELIX 27 27 PHE B 368 ALA B 380 1 13 HELIX 28 28 LEU B 387 SER B 400 1 14 HELIX 29 29 ARG B 401 ARG B 404 5 4 HELIX 30 30 GLY B 416 MET B 420 5 5 SHEET 1 A 7 ILE A 161 PRO A 166 0 SHEET 2 A 7 LYS A 125 ILE A 130 1 N PHE A 128 O LEU A 165 SHEET 3 A 7 ILE A 99 ILE A 105 1 N ILE A 102 O ILE A 127 SHEET 4 A 7 ILE A 209 HIS A 214 1 O VAL A 213 N ALA A 103 SHEET 5 A 7 MET A 256 THR A 266 1 O ILE A 263 N HIS A 214 SHEET 6 A 7 ARG A 306 ALA A 312 1 O ILE A 310 N THR A 266 SHEET 7 A 7 THR A 410 VAL A 413 1 O ILE A 411 N THR A 309 SHEET 1 B 7 ILE B 161 PRO B 166 0 SHEET 2 B 7 LYS B 125 ILE B 130 1 N PHE B 128 O LEU B 165 SHEET 3 B 7 ILE B 99 ALA B 103 1 N CYS B 100 O LYS B 125 SHEET 4 B 7 ILE B 209 HIS B 214 1 O VAL B 213 N ALA B 103 SHEET 5 B 7 MET B 256 THR B 266 1 O ILE B 263 N HIS B 214 SHEET 6 B 7 ARG B 306 ALA B 312 1 O ILE B 310 N SER B 264 SHEET 7 B 7 THR B 410 VAL B 413 1 O ILE B 411 N THR B 309 SHEET 1 C 2 ILE B 152 ASP B 154 0 SHEET 2 C 2 LYS B 157 LYS B 158 -1 O LYS B 157 N ILE B 153 SITE 1 AC1 9 ALA A 217 ALA A 219 VAL A 222 TYR A 267 SITE 2 AC1 9 TYR A 277 PHE A 368 ILE A 369 NAD A 502 SITE 3 AC1 9 HOH A 701 SITE 1 AC2 27 GLY A 104 ILE A 105 GLY A 106 GLY A 110 SITE 2 AC2 27 TYR A 111 TRP A 131 PHE A 167 ASP A 168 SITE 3 AC2 27 ALA A 169 SER A 215 LEU A 216 ALA A 217 SITE 4 AC2 27 LEU A 265 THR A 266 TYR A 267 LYS A 285 SITE 5 AC2 27 ALA A 312 GLY A 313 PRO A 314 LEU A 315 SITE 6 AC2 27 SER A 317 ILE A 369 CHV A 501 HOH A 625 SITE 7 AC2 27 HOH A 665 HOH A 677 HOH A 691 SITE 1 AC3 7 ILE A 177 LYS A 182 ASN A 192 TYR A 193 SITE 2 AC3 7 THR A 194 ASP A 197 LYS B 232 SITE 1 AC4 10 ALA B 217 ASN B 218 ALA B 219 VAL B 222 SITE 2 AC4 10 TYR B 267 TYR B 277 ALA B 319 ALA B 320 SITE 3 AC4 10 PHE B 368 NAD B 502 SITE 1 AC5 30 GLY B 104 ILE B 105 GLY B 106 GLY B 110 SITE 2 AC5 30 TYR B 111 TRP B 131 PHE B 167 ASP B 168 SITE 3 AC5 30 ALA B 169 SER B 170 SER B 215 LEU B 216 SITE 4 AC5 30 ALA B 217 ASN B 218 LEU B 265 THR B 266 SITE 5 AC5 30 TYR B 267 LYS B 285 ALA B 312 GLY B 313 SITE 6 AC5 30 PRO B 314 LEU B 315 SER B 317 ALA B 319 SITE 7 AC5 30 ILE B 369 CHV B 501 HOH B 613 HOH B 651 SITE 8 AC5 30 HOH B 652 HOH B 692 SITE 1 AC6 4 ILE A 161 ASN B 136 LYS B 185 ARG B 186 SITE 1 AC7 5 ASN A 192 LEU A 201 LYS B 220 LYS B 240 SITE 2 AC7 5 HOH B 725 SITE 1 AC8 4 HIS B 203 GLY B 207 LYS B 208 HOH B 662 SITE 1 AC9 6 ILE B 177 GLN B 191 ASN B 192 TYR B 193 SITE 2 AC9 6 THR B 194 ASP B 197 CRYST1 131.556 131.556 82.635 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007601 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012101 0.00000