PDB Short entry for 4IKU HEADER HYDROLASE 28-DEC-12 4IKU TITLE CRYSTAL STRUCTURE OF TRUNCATED (DELTA 1-89) HUMAN METHIONINE TITLE 2 AMINOPEPTIDASE TYPE 1 IN COMPLEX WITH 2-((5-CHLORO-6-METHYL-2- TITLE 3 (PYRIDIN-2-YL)PYRIMIDIN-4-YL)AMINO)-3-PHENYLPROPANAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 81-384; COMPND 5 SYNONYM: MAP 1, METAP 1, PEPTIDASE M 1; COMPND 6 EC: 3.4.11.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PITA-BREAD FOLD, AMINOPEPTIDASE, RIBOSOME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ADDLAGATTA,C.KISHOR,T.ARYA REVDAT 3 20-MAR-24 4IKU 1 REMARK LINK REVDAT 2 20-NOV-19 4IKU 1 SEQADV LINK REVDAT 1 11-DEC-13 4IKU 0 JRNL AUTH C.KISHOR,T.ARYA,R.REDDI,X.CHEN,V.SADDANAPU,A.K.MARAPAKA, JRNL AUTH 2 R.GUMPENA,D.MA,J.O.LIU,A.ADDLAGATTA JRNL TITL IDENTIFICATION, BIOCHEMICAL AND STRUCTURAL EVALUATION OF JRNL TITL 2 SPECIES-SPECIFIC INHIBITORS AGAINST TYPE I METHIONINE JRNL TITL 3 AMINOPEPTIDASES JRNL REF J.MED.CHEM. V. 56 5295 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23767698 JRNL DOI 10.1021/JM400395P REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 72035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3833 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2493 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3386 ; 1.107 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.936 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;36.002 ;23.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;11.202 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;12.918 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1934 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1271 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1718 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 174 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.153 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.255 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1522 ; 0.764 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2469 ; 1.323 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 986 ; 3.988 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 917 ; 3.228 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2508 ; 4.377 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 213 ; 3.905 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2430 ; 3.511 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4IKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000076878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : 0.04000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.2930 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : 0.31700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG 10000, 100MM HEPES, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.68850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 65 REMARK 465 GLY A 66 REMARK 465 SER A 67 REMARK 465 SER A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 GLY A 77 REMARK 465 LEU A 78 REMARK 465 VAL A 79 REMARK 465 PRO A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 82 REMARK 465 SER A 83 REMARK 465 HIS A 84 REMARK 465 MET A 85 REMARK 465 LEU A 86 REMARK 465 GLU A 87 REMARK 465 ASP A 88 REMARK 465 PRO A 89 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 207 -113.24 52.52 REMARK 500 HIS A 306 -100.86 -169.55 REMARK 500 GLU A 336 57.87 -149.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 405 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 205 O REMARK 620 2 ASN A 207 O 124.7 REMARK 620 3 VAL A 209 O 97.8 82.2 REMARK 620 4 SER A 363 O 150.1 74.5 108.2 REMARK 620 5 HOH A 513 O 89.4 145.6 89.7 76.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 404 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 212 NE2 REMARK 620 2 SHX A 401 N2 91.5 REMARK 620 3 SHX A 401 N1 84.3 77.9 REMARK 620 4 HOH A 501 O 178.7 87.4 96.1 REMARK 620 5 HOH A 530 O 94.7 168.2 92.7 86.5 REMARK 620 6 HOH A 549 O 88.4 107.8 170.9 91.3 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 403 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 229 OD1 REMARK 620 2 ASP A 229 OD2 59.0 REMARK 620 3 ASP A 240 OD1 95.2 153.9 REMARK 620 4 GLU A 367 OE1 96.3 97.5 88.6 REMARK 620 5 HOH A 528 O 85.1 88.9 84.7 173.3 REMARK 620 6 HOH A 578 O 149.5 91.1 114.1 92.7 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD2 REMARK 620 2 HIS A 303 NE2 91.3 REMARK 620 3 GLU A 336 OE1 164.7 87.9 REMARK 620 4 GLU A 367 OE2 86.8 132.7 82.6 REMARK 620 5 HOH A 578 O 96.9 123.1 96.3 104.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SHX A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G6P RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH 5-CHLORO-6-METHYL-N-(2-PHENYLETHYL)-2- REMARK 900 PYRIDIN- 2-YLPYRIMIDIN-4-AMINE REMARK 900 RELATED ID: 4IKR RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH 2-(4-(5-CHLORO-6-METHYL-2-(PYRIDIN-2- REMARK 900 YL)PYRIMIDIN-4-YL)PIPERAZIN-1-YL)ETHANOL REMARK 900 RELATED ID: 4IKS RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH N1-(5-CHLORO-6-METHYL-2-(PYRIDIN-2-YL) REMARK 900 PYRIMIDIN-4-YL)-N2-(6-(TRIFLUOROMETHYL)PYRIDIN-2-YL)ETHANE-1,2- REMARK 900 DIAMINE REMARK 900 RELATED ID: 4IKT RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH N1-(5-CHLORO-6-METHYL-2-(PYRIDIN-2-YL) REMARK 900 PYRIMIDIN-4-YL)-N2-(5-(TRIFLUOROMETHYL)PYRIDIN-2-YL)ETHANE-1,2- REMARK 900 DIAMINE DBREF 4IKU A 90 393 UNP P53582 AMPM1_HUMAN 81 384 SEQADV 4IKU MET A 65 UNP P53582 EXPRESSION TAG SEQADV 4IKU GLY A 66 UNP P53582 EXPRESSION TAG SEQADV 4IKU SER A 67 UNP P53582 EXPRESSION TAG SEQADV 4IKU SER A 68 UNP P53582 EXPRESSION TAG SEQADV 4IKU HIS A 69 UNP P53582 EXPRESSION TAG SEQADV 4IKU HIS A 70 UNP P53582 EXPRESSION TAG SEQADV 4IKU HIS A 71 UNP P53582 EXPRESSION TAG SEQADV 4IKU HIS A 72 UNP P53582 EXPRESSION TAG SEQADV 4IKU HIS A 73 UNP P53582 EXPRESSION TAG SEQADV 4IKU HIS A 74 UNP P53582 EXPRESSION TAG SEQADV 4IKU SER A 75 UNP P53582 EXPRESSION TAG SEQADV 4IKU SER A 76 UNP P53582 EXPRESSION TAG SEQADV 4IKU GLY A 77 UNP P53582 EXPRESSION TAG SEQADV 4IKU LEU A 78 UNP P53582 EXPRESSION TAG SEQADV 4IKU VAL A 79 UNP P53582 EXPRESSION TAG SEQADV 4IKU PRO A 80 UNP P53582 EXPRESSION TAG SEQADV 4IKU ARG A 81 UNP P53582 EXPRESSION TAG SEQADV 4IKU GLY A 82 UNP P53582 EXPRESSION TAG SEQADV 4IKU SER A 83 UNP P53582 EXPRESSION TAG SEQADV 4IKU HIS A 84 UNP P53582 EXPRESSION TAG SEQADV 4IKU MET A 85 UNP P53582 EXPRESSION TAG SEQADV 4IKU LEU A 86 UNP P53582 EXPRESSION TAG SEQADV 4IKU GLU A 87 UNP P53582 EXPRESSION TAG SEQADV 4IKU ASP A 88 UNP P53582 EXPRESSION TAG SEQADV 4IKU PRO A 89 UNP P53582 EXPRESSION TAG SEQRES 1 A 329 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 329 LEU VAL PRO ARG GLY SER HIS MET LEU GLU ASP PRO TYR SEQRES 3 A 329 ARG TYR THR GLY LYS LEU ARG PRO HIS TYR PRO LEU MET SEQRES 4 A 329 PRO THR ARG PRO VAL PRO SER TYR ILE GLN ARG PRO ASP SEQRES 5 A 329 TYR ALA ASP HIS PRO LEU GLY MET SER GLU SER GLU GLN SEQRES 6 A 329 ALA LEU LYS GLY THR SER GLN ILE LYS LEU LEU SER SER SEQRES 7 A 329 GLU ASP ILE GLU GLY MET ARG LEU VAL CYS ARG LEU ALA SEQRES 8 A 329 ARG GLU VAL LEU ASP VAL ALA ALA GLY MET ILE LYS PRO SEQRES 9 A 329 GLY VAL THR THR GLU GLU ILE ASP HIS ALA VAL HIS LEU SEQRES 10 A 329 ALA CYS ILE ALA ARG ASN CYS TYR PRO SER PRO LEU ASN SEQRES 11 A 329 TYR TYR ASN PHE PRO LYS SER CYS CYS THR SER VAL ASN SEQRES 12 A 329 GLU VAL ILE CYS HIS GLY ILE PRO ASP ARG ARG PRO LEU SEQRES 13 A 329 GLN GLU GLY ASP ILE VAL ASN VAL ASP ILE THR LEU TYR SEQRES 14 A 329 ARG ASN GLY TYR HIS GLY ASP LEU ASN GLU THR PHE PHE SEQRES 15 A 329 VAL GLY GLU VAL ASP ASP GLY ALA ARG LYS LEU VAL GLN SEQRES 16 A 329 THR THR TYR GLU CYS LEU MET GLN ALA ILE ASP ALA VAL SEQRES 17 A 329 LYS PRO GLY VAL ARG TYR ARG GLU LEU GLY ASN ILE ILE SEQRES 18 A 329 GLN LYS HIS ALA GLN ALA ASN GLY PHE SER VAL VAL ARG SEQRES 19 A 329 SER TYR CYS GLY HIS GLY ILE HIS LYS LEU PHE HIS THR SEQRES 20 A 329 ALA PRO ASN VAL PRO HIS TYR ALA LYS ASN LYS ALA VAL SEQRES 21 A 329 GLY VAL MET LYS SER GLY HIS VAL PHE THR ILE GLU PRO SEQRES 22 A 329 MET ILE CYS GLU GLY GLY TRP GLN ASP GLU THR TRP PRO SEQRES 23 A 329 ASP GLY TRP THR ALA VAL THR ARG ASP GLY LYS ARG SER SEQRES 24 A 329 ALA GLN PHE GLU HIS THR LEU LEU VAL THR ASP THR GLY SEQRES 25 A 329 CYS GLU ILE LEU THR ARG ARG LEU ASP SER ALA ARG PRO SEQRES 26 A 329 HIS PHE MET SER HET SHX A 401 26 HET CO A 402 1 HET CO A 403 1 HET CO A 404 1 HET K A 405 1 HETNAM SHX NALPHA-[5-CHLORO-6-METHYL-2-(PYRIDIN-2-YL)PYRIMIDIN-4- HETNAM 2 SHX YL]-D-PHENYLALANINAMIDE HETNAM CO COBALT (II) ION HETNAM K POTASSIUM ION FORMUL 2 SHX C19 H18 CL N5 O FORMUL 3 CO 3(CO 2+) FORMUL 6 K K 1+ FORMUL 7 HOH *209(H2 O) HELIX 1 1 PRO A 115 HIS A 120 5 6 HELIX 2 2 SER A 125 ALA A 130 1 6 HELIX 3 3 SER A 141 GLY A 164 1 24 HELIX 4 4 THR A 171 ARG A 186 1 16 HELIX 5 5 ASN A 194 PHE A 198 5 5 HELIX 6 6 ASP A 251 ALA A 271 1 21 HELIX 7 7 ARG A 279 ASN A 292 1 14 HELIX 8 8 PRO A 389 SER A 393 5 5 SHEET 1 A 3 TYR A 189 PRO A 190 0 SHEET 2 A 3 ILE A 225 ARG A 234 -1 O TYR A 233 N TYR A 189 SHEET 3 A 3 CYS A 203 VAL A 206 -1 N CYS A 203 O ASP A 229 SHEET 1 B 3 TYR A 189 PRO A 190 0 SHEET 2 B 3 ILE A 225 ARG A 234 -1 O TYR A 233 N TYR A 189 SHEET 3 B 3 TYR A 237 PHE A 246 -1 O TYR A 237 N ARG A 234 SHEET 1 C 3 VAL A 209 CYS A 211 0 SHEET 2 C 3 ALA A 355 THR A 357 -1 O ALA A 355 N ILE A 210 SHEET 3 C 3 ASP A 346 THR A 348 -1 N GLU A 347 O VAL A 356 SHEET 1 D 3 SER A 295 VAL A 296 0 SHEET 2 D 3 MET A 338 CYS A 340 -1 O CYS A 340 N SER A 295 SHEET 3 D 3 SER A 363 GLN A 365 -1 O ALA A 364 N ILE A 339 SHEET 1 E 2 GLY A 302 GLY A 304 0 SHEET 2 E 2 THR A 311 VAL A 315 -1 O VAL A 315 N GLY A 302 SHEET 1 F 3 VAL A 332 ILE A 335 0 SHEET 2 F 3 HIS A 368 THR A 373 -1 O LEU A 370 N PHE A 333 SHEET 3 F 3 GLY A 376 ILE A 379 -1 O GLU A 378 N LEU A 371 LINK O SER A 205 K K A 405 1555 1555 2.89 LINK O ASN A 207 K K A 405 1555 1555 2.82 LINK O VAL A 209 K K A 405 1555 1555 2.58 LINK NE2 HIS A 212 CO CO A 404 1555 1555 2.18 LINK OD1 ASP A 229 CO CO A 403 1555 1555 2.13 LINK OD2 ASP A 229 CO CO A 403 1555 1555 2.32 LINK OD2 ASP A 240 CO CO A 402 1555 1555 2.04 LINK OD1 ASP A 240 CO CO A 403 1555 1555 2.03 LINK NE2 HIS A 303 CO CO A 402 1555 1555 2.09 LINK OE1 GLU A 336 CO CO A 402 1555 1555 2.17 LINK O SER A 363 K K A 405 1555 1555 2.64 LINK OE2 GLU A 367 CO CO A 402 1555 1555 2.03 LINK OE1 GLU A 367 CO CO A 403 1555 1555 2.14 LINK N2 SHX A 401 CO CO A 404 1555 1555 2.16 LINK N1 SHX A 401 CO CO A 404 1555 1555 2.19 LINK CO CO A 402 O HOH A 578 1555 1555 1.97 LINK CO CO A 403 O HOH A 528 1555 1555 2.27 LINK CO CO A 403 O HOH A 578 1555 1555 2.03 LINK CO CO A 404 O HOH A 501 1555 1555 2.15 LINK CO CO A 404 O HOH A 530 1555 1555 2.20 LINK CO CO A 404 O HOH A 549 1555 1555 2.22 LINK K K A 405 O HOH A 513 1555 1555 2.75 CISPEP 1 TYR A 100 PRO A 101 0 -1.03 CISPEP 2 ALA A 312 PRO A 313 0 2.10 SITE 1 AC1 11 TYR A 195 TYR A 196 CYS A 203 HIS A 212 SITE 2 AC1 11 TYR A 300 HIS A 310 TRP A 353 CO A 404 SITE 3 AC1 11 HOH A 501 HOH A 567 HOH A 660 SITE 1 AC2 7 ASP A 240 HIS A 303 THR A 334 GLU A 336 SITE 2 AC2 7 GLU A 367 CO A 403 HOH A 578 SITE 1 AC3 6 ASP A 229 ASP A 240 GLU A 367 CO A 402 SITE 2 AC3 6 HOH A 528 HOH A 578 SITE 1 AC4 5 HIS A 212 SHX A 401 HOH A 501 HOH A 530 SITE 2 AC4 5 HOH A 549 SITE 1 AC5 5 SER A 205 ASN A 207 VAL A 209 SER A 363 SITE 2 AC5 5 HOH A 513 CRYST1 47.493 77.377 48.088 90.00 90.76 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021056 0.000000 0.000279 0.00000 SCALE2 0.000000 0.012924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020797 0.00000