PDB Short entry for 4IQV HEADER TRANSFERASE/TRANSFERASE INHIBITOR/DNA 13-JAN-13 4IQV TITLE TDT CORE IN COMPLEX WITH INHIBITOR 6-[4-(3-FLUOROBENZOYL)-1H-PYRROL-2- TITLE 2 YL]-2-HYDROXY-4-OXOHEXA-2,5-DIENOIC ACID AND SSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA NUCLEOTIDYLEXOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 SYNONYM: TERMINAL ADDITION ENZYME, TERMINAL COMPND 6 DEOXYNUCLEOTIDYLTRANSFERASE, TDT, TERMINAL TRANSFERASE; COMPND 7 EC: 2.7.7.31; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 5'-D(*GP*CP*CP*G)-3'; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DNTT, TDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS TERMINAL TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.GOUGE,M.DELARUE REVDAT 4 20-SEP-23 4IQV 1 REMARK SEQADV LINK REVDAT 3 26-JUL-17 4IQV 1 SOURCE REMARK REVDAT 2 09-OCT-13 4IQV 1 JRNL REVDAT 1 04-SEP-13 4IQV 0 JRNL AUTH R.COSTI,G.CUZZUCOLI CRUCITTI,L.PESCATORI,A.MESSORE, JRNL AUTH 2 L.SCIPIONE,S.TORTORELLA,A.AMOROSO,E.CRESPAN,P.CAMPIGLIA, JRNL AUTH 3 B.MARESCA,A.PORTA,I.GRANATA,E.NOVELLINO,J.GOUGE,M.DELARUE, JRNL AUTH 4 G.MAGA,R.DI SANTO JRNL TITL NEW NUCLEOTIDE-COMPETITIVE NON-NUCLEOSIDE INHIBITORS OF JRNL TITL 2 TERMINAL DEOXYNUCLEOTIDYL TRANSFERASE: DISCOVERY, JRNL TITL 3 CHARACTERIZATION, AND CRYSTAL STRUCTURE IN COMPLEX WITH THE JRNL TITL 4 TARGET. JRNL REF J.MED.CHEM. V. 56 7431 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23968551 JRNL DOI 10.1021/JM4010187 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 11278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 538 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2640 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2168 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2513 REMARK 3 BIN R VALUE (WORKING SET) : 0.2126 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.81 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2840 REMARK 3 NUCLEIC ACID ATOMS : 40 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.15490 REMARK 3 B22 (A**2) : 15.75280 REMARK 3 B33 (A**2) : -23.90770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.339 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.384 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2966 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4008 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1392 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 79 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 440 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2966 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 383 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3323 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.78 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.98 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|148 - 240} REMARK 3 ORIGIN FOR THE GROUP (A): 27.3326 16.4409 7.5070 REMARK 3 T TENSOR REMARK 3 T11: -0.0725 T22: -0.0481 REMARK 3 T33: 0.0348 T12: 0.0053 REMARK 3 T13: 0.0237 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 2.8040 L22: 1.0435 REMARK 3 L33: 1.0288 L12: 0.1389 REMARK 3 L13: -0.2418 L23: 0.9990 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: -0.1002 S13: -0.0051 REMARK 3 S21: -0.1775 S22: -0.0428 S23: -0.1782 REMARK 3 S31: -0.2864 S32: -0.0730 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|241 - 443} REMARK 3 ORIGIN FOR THE GROUP (A): 11.9105 16.7587 32.7253 REMARK 3 T TENSOR REMARK 3 T11: -0.1694 T22: -0.1291 REMARK 3 T33: 0.0815 T12: 0.0029 REMARK 3 T13: 0.0625 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.3700 L22: 2.6930 REMARK 3 L33: 0.5986 L12: 0.8489 REMARK 3 L13: 0.3440 L23: 0.6542 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.1139 S13: 0.0294 REMARK 3 S21: 0.1100 S22: -0.0169 S23: 0.1811 REMARK 3 S31: 0.0040 S32: -0.1059 S33: 0.0153 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|444 - 510} REMARK 3 ORIGIN FOR THE GROUP (A): 7.2009 3.8206 12.1774 REMARK 3 T TENSOR REMARK 3 T11: -0.1979 T22: -0.0560 REMARK 3 T33: 0.1159 T12: 0.0051 REMARK 3 T13: -0.0149 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 4.8395 L22: 1.5936 REMARK 3 L33: 2.1266 L12: -0.7425 REMARK 3 L13: 0.9593 L23: -0.2229 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: 0.1098 S13: -0.1737 REMARK 3 S21: 0.2046 S22: -0.0662 S23: 0.1712 REMARK 3 S31: 0.0058 S32: -0.0168 S33: 0.0386 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11303 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1JMS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG4000, 200 MM AMMONIUM FORMATE, REMARK 280 100 MM MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.43000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 130 REMARK 465 MET A 131 REMARK 465 SER A 132 REMARK 465 PRO A 133 REMARK 465 SER A 134 REMARK 465 PRO A 135 REMARK 465 VAL A 136 REMARK 465 PRO A 137 REMARK 465 GLY A 138 REMARK 465 SER A 139 REMARK 465 GLN A 140 REMARK 465 ASN A 141 REMARK 465 VAL A 142 REMARK 465 PRO A 143 REMARK 465 ALA A 144 REMARK 465 PRO A 145 REMARK 465 ALA A 146 REMARK 465 VAL A 147 REMARK 465 SER A 420 REMARK 465 GLY A 421 REMARK 465 GLN A 422 REMARK 465 GLN A 423 REMARK 465 MET A 511 REMARK 465 GLY A 512 REMARK 465 SER A 513 REMARK 465 SER A 514 REMARK 465 HIS A 515 REMARK 465 HIS A 516 REMARK 465 HIS A 517 REMARK 465 HIS A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 465 SER A 521 REMARK 465 SER A 522 REMARK 465 GLY A 523 REMARK 465 LEU A 524 REMARK 465 VAL A 525 REMARK 465 PRO A 526 REMARK 465 ARG A 527 REMARK 465 GLY A 528 REMARK 465 SER A 529 REMARK 465 DG C 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LEU A 181 CG CD1 CD2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 LYS A 238 CD CE NZ REMARK 470 LYS A 250 NZ REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 ASP A 356 CG OD1 OD2 REMARK 470 LYS A 370 CD CE NZ REMARK 470 ARG A 393 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 VAL A 395 CG1 CG2 REMARK 470 ASP A 396 CG OD1 OD2 REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 LYS A 469 CD CE NZ REMARK 470 DG C 1 C8 N7 C5 C6 O6 N1 C2 REMARK 470 DG C 1 N2 N3 C4 REMARK 470 DC C 3 C2 O2 N3 C4 N4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 394 NH1 ARG A 461 2.03 REMARK 500 OE1 GLN A 455 NH1 ARG A 458 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 1 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DC C 2 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 331 -152.74 -113.36 REMARK 500 ASN A 509 48.17 -84.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 253 O REMARK 620 2 VAL A 255 O 82.4 REMARK 620 3 VAL A 258 O 98.0 86.1 REMARK 620 4 DC C 3 OP1 172.8 90.5 81.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FO A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IQT RELATED DB: PDB REMARK 900 RELATED ID: 4IQU RELATED DB: PDB REMARK 900 RELATED ID: 4IQW RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN FRAGMENT IS THE CATALYTIC CORE OF THE TDT-S (TDT-SMALL) REMARK 999 ISOFORM (UNP RESIDUES 132-482, 503-530). DBREF 4IQV A 132 482 UNP P09838 TDT_MOUSE 132 482 DBREF 4IQV A 483 510 UNP P09838 TDT_MOUSE 503 530 DBREF 4IQV C 1 4 PDB 4IQV 4IQV 1 4 SEQADV 4IQV HIS A 130 UNP P09838 EXPRESSION TAG SEQADV 4IQV MET A 131 UNP P09838 EXPRESSION TAG SEQADV 4IQV ALA A 398 UNP P09838 LEU 398 ENGINEERED MUTATION SEQADV 4IQV MET A 511 UNP P09838 EXPRESSION TAG SEQADV 4IQV GLY A 512 UNP P09838 EXPRESSION TAG SEQADV 4IQV SER A 513 UNP P09838 EXPRESSION TAG SEQADV 4IQV SER A 514 UNP P09838 EXPRESSION TAG SEQADV 4IQV HIS A 515 UNP P09838 EXPRESSION TAG SEQADV 4IQV HIS A 516 UNP P09838 EXPRESSION TAG SEQADV 4IQV HIS A 517 UNP P09838 EXPRESSION TAG SEQADV 4IQV HIS A 518 UNP P09838 EXPRESSION TAG SEQADV 4IQV HIS A 519 UNP P09838 EXPRESSION TAG SEQADV 4IQV HIS A 520 UNP P09838 EXPRESSION TAG SEQADV 4IQV SER A 521 UNP P09838 EXPRESSION TAG SEQADV 4IQV SER A 522 UNP P09838 EXPRESSION TAG SEQADV 4IQV GLY A 523 UNP P09838 EXPRESSION TAG SEQADV 4IQV LEU A 524 UNP P09838 EXPRESSION TAG SEQADV 4IQV VAL A 525 UNP P09838 EXPRESSION TAG SEQADV 4IQV PRO A 526 UNP P09838 EXPRESSION TAG SEQADV 4IQV ARG A 527 UNP P09838 EXPRESSION TAG SEQADV 4IQV GLY A 528 UNP P09838 EXPRESSION TAG SEQADV 4IQV SER A 529 UNP P09838 EXPRESSION TAG SEQRES 1 A 400 HIS MET SER PRO SER PRO VAL PRO GLY SER GLN ASN VAL SEQRES 2 A 400 PRO ALA PRO ALA VAL LYS LYS ILE SER GLN TYR ALA CYS SEQRES 3 A 400 GLN ARG ARG THR THR LEU ASN ASN TYR ASN GLN LEU PHE SEQRES 4 A 400 THR ASP ALA LEU ASP ILE LEU ALA GLU ASN ASP GLU LEU SEQRES 5 A 400 ARG GLU ASN GLU GLY SER CYS LEU ALA PHE MET ARG ALA SEQRES 6 A 400 SER SER VAL LEU LYS SER LEU PRO PHE PRO ILE THR SER SEQRES 7 A 400 MET LYS ASP THR GLU GLY ILE PRO CYS LEU GLY ASP LYS SEQRES 8 A 400 VAL LYS SER ILE ILE GLU GLY ILE ILE GLU ASP GLY GLU SEQRES 9 A 400 SER SER GLU ALA LYS ALA VAL LEU ASN ASP GLU ARG TYR SEQRES 10 A 400 LYS SER PHE LYS LEU PHE THR SER VAL PHE GLY VAL GLY SEQRES 11 A 400 LEU LYS THR ALA GLU LYS TRP PHE ARG MET GLY PHE ARG SEQRES 12 A 400 THR LEU SER LYS ILE GLN SER ASP LYS SER LEU ARG PHE SEQRES 13 A 400 THR GLN MET GLN LYS ALA GLY PHE LEU TYR TYR GLU ASP SEQRES 14 A 400 LEU VAL SER CYS VAL ASN ARG PRO GLU ALA GLU ALA VAL SEQRES 15 A 400 SER MET LEU VAL LYS GLU ALA VAL VAL THR PHE LEU PRO SEQRES 16 A 400 ASP ALA LEU VAL THR MET THR GLY GLY PHE ARG ARG GLY SEQRES 17 A 400 LYS MET THR GLY HIS ASP VAL ASP PHE LEU ILE THR SER SEQRES 18 A 400 PRO GLU ALA THR GLU ASP GLU GLU GLN GLN LEU LEU HIS SEQRES 19 A 400 LYS VAL THR ASP PHE TRP LYS GLN GLN GLY LEU LEU LEU SEQRES 20 A 400 TYR CYS ASP ILE LEU GLU SER THR PHE GLU LYS PHE LYS SEQRES 21 A 400 GLN PRO SER ARG LYS VAL ASP ALA ALA ASP HIS PHE GLN SEQRES 22 A 400 LYS CYS PHE LEU ILE LEU LYS LEU ASP HIS GLY ARG VAL SEQRES 23 A 400 HIS SER GLU LYS SER GLY GLN GLN GLU GLY LYS GLY TRP SEQRES 24 A 400 LYS ALA ILE ARG VAL ASP LEU VAL MET CYS PRO TYR ASP SEQRES 25 A 400 ARG ARG ALA PHE ALA LEU LEU GLY TRP THR GLY SER ARG SEQRES 26 A 400 GLN PHE GLU ARG ASP LEU ARG ARG TYR ALA THR HIS GLU SEQRES 27 A 400 ARG LYS MET MET LEU ASP ASN HIS ALA LEU TYR ASP ARG SEQRES 28 A 400 THR LYS ARG VAL PHE LEU GLU ALA GLU SER GLU GLU GLU SEQRES 29 A 400 ILE PHE ALA HIS LEU GLY LEU ASP TYR ILE GLU PRO TRP SEQRES 30 A 400 GLU ARG ASN ALA MET GLY SER SER HIS HIS HIS HIS HIS SEQRES 31 A 400 HIS SER SER GLY LEU VAL PRO ARG GLY SER SEQRES 1 C 4 DG DC DC DG HET NA A 601 1 HET 1FO A 602 24 HETNAM NA SODIUM ION HETNAM 1FO 6-[4-(3-FLUOROBENZOYL)-1H-PYRROL-2-YL]-2-HYDROXY-4- HETNAM 2 1FO OXOHEXA-2,5-DIENOIC ACID FORMUL 3 NA NA 1+ FORMUL 4 1FO C17 H12 F N O5 FORMUL 5 HOH *184(H2 O) HELIX 1 1 TYR A 153 ARG A 157 5 5 HELIX 2 2 ASN A 165 ARG A 182 1 18 HELIX 3 3 ASN A 184 SER A 200 1 17 HELIX 4 4 SER A 207 GLU A 212 5 6 HELIX 5 5 GLY A 218 GLY A 232 1 15 HELIX 6 6 SER A 234 ASP A 243 1 10 HELIX 7 7 ASP A 243 SER A 254 1 12 HELIX 8 8 GLY A 259 MET A 269 1 11 HELIX 9 9 THR A 273 ASP A 280 1 8 HELIX 10 10 THR A 286 TYR A 295 1 10 HELIX 11 11 TYR A 295 SER A 301 1 7 HELIX 12 12 ARG A 305 LEU A 323 1 19 HELIX 13 13 THR A 331 ARG A 336 1 6 HELIX 14 14 THR A 354 GLN A 372 1 19 HELIX 15 15 GLY A 413 VAL A 415 5 3 HELIX 16 16 PRO A 439 ASP A 441 5 3 HELIX 17 17 ARG A 442 GLY A 452 1 11 HELIX 18 18 SER A 453 LYS A 469 1 17 HELIX 19 19 SER A 490 LEU A 498 1 9 HELIX 20 20 GLU A 504 ARG A 508 5 5 SHEET 1 A 2 VAL A 303 ASN A 304 0 SHEET 2 A 2 THR A 340 GLY A 341 -1 O GLY A 341 N VAL A 303 SHEET 1 B 5 LEU A 327 MET A 330 0 SHEET 2 B 5 VAL A 344 THR A 349 -1 O THR A 349 N LEU A 327 SHEET 3 B 5 TRP A 428 MET A 437 1 O VAL A 436 N ILE A 348 SHEET 4 B 5 GLN A 402 ASP A 411 -1 N LEU A 408 O ILE A 431 SHEET 5 B 5 LEU A 375 LEU A 381 -1 N LEU A 381 O LYS A 403 SHEET 1 C 3 MET A 470 LEU A 472 0 SHEET 2 C 3 LEU A 477 ASP A 479 -1 O TYR A 478 N MET A 471 SHEET 3 C 3 VAL A 484 LEU A 486 -1 O LEU A 486 N LEU A 477 LINK O THR A 253 NA NA A 601 1555 1555 2.23 LINK O VAL A 255 NA NA A 601 1555 1555 2.81 LINK O VAL A 258 NA NA A 601 1555 1555 2.60 LINK NA NA A 601 OP1 DC C 3 1555 1555 2.63 CISPEP 1 GLY A 452 SER A 453 0 -1.29 SITE 1 AC1 4 THR A 253 VAL A 255 VAL A 258 DC C 3 SITE 1 AC2 16 MET A 192 THR A 331 GLY A 332 GLY A 333 SITE 2 AC2 16 PHE A 334 ARG A 336 GLY A 341 ASP A 343 SITE 3 AC2 16 VAL A 344 ASP A 345 SER A 453 ARG A 454 SITE 4 AC2 16 GLN A 455 ALA A 510 HOH A 727 HOH A 814 CRYST1 46.860 84.540 122.950 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008133 0.00000