PDB Short entry for 4IQW HEADER TRANSFERASE/TRANSFERASE INHIBITOR/DNA 13-JAN-13 4IQW TITLE TDT CORE IN COMPLEX WITH INHIBITOR (2Z,5E)-6-[4-(4-FLUOROBENZOYL)-1H- TITLE 2 PYRROL-2-YL]-2-HYDROXY-4-OXOHEXA-2,5-DIENOIC ACID AND SSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA NUCLEOTIDYLEXOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 SYNONYM: TERMINAL ADDITION ENZYME, TERMINAL COMPND 6 DEOXYNUCLEOTIDYLTRANSFERASE, TDT, TERMINAL TRANSFERASE; COMPND 7 EC: 2.7.7.31; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 5'-D(*GP*CP*CP*G)-3'; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DNTT, TDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS TERMINAL TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.GOUGE,M.DELARUE REVDAT 4 20-SEP-23 4IQW 1 REMARK SEQADV LINK REVDAT 3 26-JUL-17 4IQW 1 SOURCE REMARK REVDAT 2 09-OCT-13 4IQW 1 JRNL REVDAT 1 04-SEP-13 4IQW 0 JRNL AUTH R.COSTI,G.CUZZUCOLI CRUCITTI,L.PESCATORI,A.MESSORE, JRNL AUTH 2 L.SCIPIONE,S.TORTORELLA,A.AMOROSO,E.CRESPAN,P.CAMPIGLIA, JRNL AUTH 3 B.MARESCA,A.PORTA,I.GRANATA,E.NOVELLINO,J.GOUGE,M.DELARUE, JRNL AUTH 4 G.MAGA,R.DI SANTO JRNL TITL NEW NUCLEOTIDE-COMPETITIVE NON-NUCLEOSIDE INHIBITORS OF JRNL TITL 2 TERMINAL DEOXYNUCLEOTIDYL TRANSFERASE: DISCOVERY, JRNL TITL 3 CHARACTERIZATION, AND CRYSTAL STRUCTURE IN COMPLEX WITH THE JRNL TITL 4 TARGET. JRNL REF J.MED.CHEM. V. 56 7431 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23968551 JRNL DOI 10.1021/JM4010187 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2911 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2075 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2760 REMARK 3 BIN R VALUE (WORKING SET) : 0.2047 REMARK 3 BIN FREE R VALUE : 0.2586 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.19 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 151 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2820 REMARK 3 NUCLEIC ACID ATOMS : 40 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.31750 REMARK 3 B22 (A**2) : 4.22830 REMARK 3 B33 (A**2) : -10.54580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.333 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.858 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.282 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.594 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.275 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2956 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3995 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1386 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 80 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 436 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2956 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 381 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3389 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.01 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|149 - 238} REMARK 3 ORIGIN FOR THE GROUP (A): 27.7365 11.4653 5.5010 REMARK 3 T TENSOR REMARK 3 T11: -0.1739 T22: -0.1459 REMARK 3 T33: 0.1673 T12: 0.0345 REMARK 3 T13: -0.0021 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 3.6357 L22: 2.3996 REMARK 3 L33: 2.5635 L12: 1.5989 REMARK 3 L13: -1.1613 L23: 1.3458 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: 0.1285 S13: 0.1168 REMARK 3 S21: -0.3313 S22: -0.0337 S23: -0.0888 REMARK 3 S31: -0.2516 S32: 0.0405 S33: 0.0387 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|239 - 453} REMARK 3 ORIGIN FOR THE GROUP (A): 12.0292 11.2193 29.9170 REMARK 3 T TENSOR REMARK 3 T11: -0.1900 T22: -0.1807 REMARK 3 T33: 0.2176 T12: -0.0010 REMARK 3 T13: 0.0630 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.8420 L22: 2.1350 REMARK 3 L33: 0.4179 L12: 0.2105 REMARK 3 L13: 0.1105 L23: 0.4596 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: -0.1279 S13: 0.0581 REMARK 3 S21: 0.1487 S22: -0.0282 S23: 0.3003 REMARK 3 S31: 0.0008 S32: -0.0891 S33: 0.0523 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|454 - 510} REMARK 3 ORIGIN FOR THE GROUP (A): 7.4184 -1.2642 8.6273 REMARK 3 T TENSOR REMARK 3 T11: -0.1798 T22: -0.1244 REMARK 3 T33: 0.2745 T12: 0.0094 REMARK 3 T13: -0.0202 T23: -0.0909 REMARK 3 L TENSOR REMARK 3 L11: 4.1764 L22: 0.0000 REMARK 3 L33: 0.9372 L12: -0.9339 REMARK 3 L13: 1.2173 L23: -0.4217 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: 0.3132 S13: -0.2098 REMARK 3 S21: -0.0414 S22: -0.1275 S23: 0.2252 REMARK 3 S31: 0.1347 S32: -0.0856 S33: 0.1329 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14429 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1JMS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 200 MM SODIUM FORMATE, REMARK 280 100 MM MES, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.32500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.36500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.33500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.36500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.32500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.33500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 130 REMARK 465 MET A 131 REMARK 465 SER A 132 REMARK 465 PRO A 133 REMARK 465 SER A 134 REMARK 465 PRO A 135 REMARK 465 VAL A 136 REMARK 465 PRO A 137 REMARK 465 GLY A 138 REMARK 465 SER A 139 REMARK 465 GLN A 140 REMARK 465 ASN A 141 REMARK 465 VAL A 142 REMARK 465 PRO A 143 REMARK 465 ALA A 144 REMARK 465 PRO A 145 REMARK 465 ALA A 146 REMARK 465 VAL A 147 REMARK 465 LYS A 148 REMARK 465 VAL A 395 REMARK 465 SER A 420 REMARK 465 GLY A 421 REMARK 465 GLN A 422 REMARK 465 GLN A 423 REMARK 465 DG C 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LEU A 181 CG CD1 CD2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 209 CD CE NZ REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 LYS A 220 CE NZ REMARK 470 LYS A 238 CD CE NZ REMARK 470 LYS A 250 CD CE NZ REMARK 470 LYS A 261 CE NZ REMARK 470 LYS A 265 CE NZ REMARK 470 ARG A 268 CZ NH1 NH2 REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 LYS A 389 CD CE NZ REMARK 470 ARG A 393 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 LYS A 469 CE NZ REMARK 470 LYS A 482 CE NZ REMARK 470 DG C 1 C8 N7 C5 C6 O6 N1 C2 REMARK 470 DG C 1 N2 N3 C4 REMARK 470 DC C 2 C2 O2 N3 C4 N4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 394 NH1 ARG A 461 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 3 N1 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 DC C 3 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC C 3 N1 - C2 - O2 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC C 3 C2 - N1 - C1' ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 331 -153.60 -112.57 REMARK 500 ASN A 509 45.51 -85.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 253 O REMARK 620 2 VAL A 255 O 80.5 REMARK 620 3 VAL A 258 O 97.0 86.5 REMARK 620 4 DC C 3 OP1 167.8 87.5 84.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1FQ A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IQT RELATED DB: PDB REMARK 900 RELATED ID: 4IQU RELATED DB: PDB REMARK 900 RELATED ID: 4IQV RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN FRAGMENT IS THE CATALYTIC CORE OF THE TDT-S (TDT-SMALL) REMARK 999 ISOFORM (UNP RESIDUES 132-482, 503-530). DBREF 4IQW A 132 482 UNP P09838 TDT_MOUSE 132 482 DBREF 4IQW A 483 510 UNP P09838 TDT_MOUSE 503 530 DBREF 4IQW C 1 4 PDB 4IQW 4IQW 1 4 SEQADV 4IQW HIS A 130 UNP P09838 EXPRESSION TAG SEQADV 4IQW MET A 131 UNP P09838 EXPRESSION TAG SEQADV 4IQW ALA A 398 UNP P09838 LEU 398 ENGINEERED MUTATION SEQRES 1 A 381 HIS MET SER PRO SER PRO VAL PRO GLY SER GLN ASN VAL SEQRES 2 A 381 PRO ALA PRO ALA VAL LYS LYS ILE SER GLN TYR ALA CYS SEQRES 3 A 381 GLN ARG ARG THR THR LEU ASN ASN TYR ASN GLN LEU PHE SEQRES 4 A 381 THR ASP ALA LEU ASP ILE LEU ALA GLU ASN ASP GLU LEU SEQRES 5 A 381 ARG GLU ASN GLU GLY SER CYS LEU ALA PHE MET ARG ALA SEQRES 6 A 381 SER SER VAL LEU LYS SER LEU PRO PHE PRO ILE THR SER SEQRES 7 A 381 MET LYS ASP THR GLU GLY ILE PRO CYS LEU GLY ASP LYS SEQRES 8 A 381 VAL LYS SER ILE ILE GLU GLY ILE ILE GLU ASP GLY GLU SEQRES 9 A 381 SER SER GLU ALA LYS ALA VAL LEU ASN ASP GLU ARG TYR SEQRES 10 A 381 LYS SER PHE LYS LEU PHE THR SER VAL PHE GLY VAL GLY SEQRES 11 A 381 LEU LYS THR ALA GLU LYS TRP PHE ARG MET GLY PHE ARG SEQRES 12 A 381 THR LEU SER LYS ILE GLN SER ASP LYS SER LEU ARG PHE SEQRES 13 A 381 THR GLN MET GLN LYS ALA GLY PHE LEU TYR TYR GLU ASP SEQRES 14 A 381 LEU VAL SER CYS VAL ASN ARG PRO GLU ALA GLU ALA VAL SEQRES 15 A 381 SER MET LEU VAL LYS GLU ALA VAL VAL THR PHE LEU PRO SEQRES 16 A 381 ASP ALA LEU VAL THR MET THR GLY GLY PHE ARG ARG GLY SEQRES 17 A 381 LYS MET THR GLY HIS ASP VAL ASP PHE LEU ILE THR SER SEQRES 18 A 381 PRO GLU ALA THR GLU ASP GLU GLU GLN GLN LEU LEU HIS SEQRES 19 A 381 LYS VAL THR ASP PHE TRP LYS GLN GLN GLY LEU LEU LEU SEQRES 20 A 381 TYR CYS ASP ILE LEU GLU SER THR PHE GLU LYS PHE LYS SEQRES 21 A 381 GLN PRO SER ARG LYS VAL ASP ALA ALA ASP HIS PHE GLN SEQRES 22 A 381 LYS CYS PHE LEU ILE LEU LYS LEU ASP HIS GLY ARG VAL SEQRES 23 A 381 HIS SER GLU LYS SER GLY GLN GLN GLU GLY LYS GLY TRP SEQRES 24 A 381 LYS ALA ILE ARG VAL ASP LEU VAL MET CYS PRO TYR ASP SEQRES 25 A 381 ARG ARG ALA PHE ALA LEU LEU GLY TRP THR GLY SER ARG SEQRES 26 A 381 GLN PHE GLU ARG ASP LEU ARG ARG TYR ALA THR HIS GLU SEQRES 27 A 381 ARG LYS MET MET LEU ASP ASN HIS ALA LEU TYR ASP ARG SEQRES 28 A 381 THR LYS ARG VAL PHE LEU GLU ALA GLU SER GLU GLU GLU SEQRES 29 A 381 ILE PHE ALA HIS LEU GLY LEU ASP TYR ILE GLU PRO TRP SEQRES 30 A 381 GLU ARG ASN ALA SEQRES 1 C 4 DG DC DC DG HET NA A 601 1 HET 1FQ A 602 24 HETNAM NA SODIUM ION HETNAM 1FQ (2Z,5E)-6-[4-(4-FLUOROBENZOYL)-1H-PYRROL-2-YL]-2- HETNAM 2 1FQ HYDROXY-4-OXOHEXA-2,5-DIENOIC ACID FORMUL 3 NA NA 1+ FORMUL 4 1FQ C17 H12 F N O5 FORMUL 5 HOH *187(H2 O) HELIX 1 1 TYR A 153 ARG A 157 5 5 HELIX 2 2 ASN A 165 ARG A 182 1 18 HELIX 3 3 ASN A 184 LEU A 201 1 18 HELIX 4 4 SER A 207 GLU A 212 5 6 HELIX 5 5 GLY A 218 GLY A 232 1 15 HELIX 6 6 SER A 234 ASP A 243 1 10 HELIX 7 7 ASP A 243 SER A 254 1 12 HELIX 8 8 GLY A 259 MET A 269 1 11 HELIX 9 9 THR A 273 ASP A 280 1 8 HELIX 10 10 THR A 286 TYR A 295 1 10 HELIX 11 11 TYR A 295 SER A 301 1 7 HELIX 12 12 ARG A 305 LEU A 323 1 19 HELIX 13 13 THR A 331 ARG A 336 1 6 HELIX 14 14 THR A 354 GLN A 372 1 19 HELIX 15 15 GLY A 413 VAL A 415 5 3 HELIX 16 16 PRO A 439 ASP A 441 5 3 HELIX 17 17 ARG A 442 GLY A 452 1 11 HELIX 18 18 SER A 453 LYS A 469 1 17 HELIX 19 19 SER A 490 LEU A 498 1 9 HELIX 20 20 GLU A 504 ARG A 508 5 5 SHEET 1 A 2 VAL A 303 ASN A 304 0 SHEET 2 A 2 THR A 340 GLY A 341 -1 O GLY A 341 N VAL A 303 SHEET 1 B 5 LEU A 327 MET A 330 0 SHEET 2 B 5 VAL A 344 THR A 349 -1 O THR A 349 N LEU A 327 SHEET 3 B 5 TRP A 428 MET A 437 1 O VAL A 436 N ILE A 348 SHEET 4 B 5 GLN A 402 ASP A 411 -1 N LEU A 406 O VAL A 433 SHEET 5 B 5 LEU A 375 LEU A 381 -1 N LEU A 381 O LYS A 403 SHEET 1 C 3 MET A 470 LEU A 472 0 SHEET 2 C 3 LEU A 477 ASP A 479 -1 O TYR A 478 N MET A 471 SHEET 3 C 3 VAL A 484 LEU A 486 -1 O LEU A 486 N LEU A 477 LINK O THR A 253 NA NA A 601 1555 1555 2.43 LINK O VAL A 255 NA NA A 601 1555 1555 2.81 LINK O VAL A 258 NA NA A 601 1555 1555 2.68 LINK NA NA A 601 OP1 DC C 3 1555 1555 2.68 CISPEP 1 GLY A 452 SER A 453 0 -0.80 SITE 1 AC1 4 THR A 253 VAL A 255 VAL A 258 DC C 3 SITE 1 AC2 9 GLY A 332 ARG A 336 ASP A 345 ASP A 399 SITE 2 AC2 9 TRP A 450 SER A 453 ARG A 454 GLN A 455 SITE 3 AC2 9 ALA A 510 CRYST1 46.650 84.670 114.730 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021436 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008716 0.00000