PDB Short entry for 4ITJ HEADER TRANSFERASE/TRANSFERASE INHIBITOR 18-JAN-13 4ITJ TITLE CRYSTAL STRUCTURE OF RIP1 KINASE IN COMPLEX WITH NECROSTATIN-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CELL DEATH PROTEIN RIP, RECEPTOR-INTERACTING PROTEIN 1, RIP- COMPND 5 1, SERINE/THREONINE-PROTEIN KINASE RIP; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK1, RIP, RIP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ALPHA/BETA, RIP1 KINASE, NECROPTOSIS, NECROSTATINS, KINASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.XIE,W.PENG,Y.LIU,C.YAN,Y.SHI REVDAT 3 20-SEP-23 4ITJ 1 REMARK SEQADV REVDAT 2 27-MAR-13 4ITJ 1 JRNL REVDAT 1 13-MAR-13 4ITJ 0 JRNL AUTH T.XIE,W.PENG,Y.LIU,C.YAN,J.MAKI,A.DEGTEREV,J.YUAN,Y.SHI JRNL TITL STRUCTURAL BASIS OF RIP1 INHIBITION BY NECROSTATINS. JRNL REF STRUCTURE V. 21 493 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23473668 JRNL DOI 10.1016/J.STR.2013.01.016 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 54270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2424 - 5.5897 0.91 3026 159 0.2109 0.2165 REMARK 3 2 5.5897 - 4.4395 0.95 3103 193 0.1577 0.1778 REMARK 3 3 4.4395 - 3.8791 0.95 3108 169 0.1507 0.1765 REMARK 3 4 3.8791 - 3.5248 0.92 3065 175 0.1643 0.1914 REMARK 3 5 3.5248 - 3.2724 0.95 3162 157 0.1734 0.2158 REMARK 3 6 3.2724 - 3.0795 0.95 3119 183 0.1865 0.2249 REMARK 3 7 3.0795 - 2.9254 0.95 3110 161 0.2027 0.2507 REMARK 3 8 2.9254 - 2.7981 0.95 3218 161 0.1949 0.2141 REMARK 3 9 2.7981 - 2.6904 0.95 3146 168 0.1913 0.2321 REMARK 3 10 2.6904 - 2.5976 0.95 3142 162 0.1995 0.2451 REMARK 3 11 2.5976 - 2.5164 0.95 3152 168 0.1992 0.2695 REMARK 3 12 2.5164 - 2.4445 0.95 3162 140 0.1819 0.2139 REMARK 3 13 2.4445 - 2.3802 0.96 3185 179 0.1794 0.2051 REMARK 3 14 2.3802 - 2.3221 0.94 3067 175 0.1841 0.2372 REMARK 3 15 2.3221 - 2.2693 0.95 3159 164 0.1863 0.2272 REMARK 3 16 2.2693 - 2.2210 0.93 3083 144 0.1894 0.2609 REMARK 3 17 2.2210 - 2.1766 0.94 3121 190 0.1962 0.2475 REMARK 3 18 2.1766 - 2.1356 0.94 3061 169 0.2014 0.2449 REMARK 3 19 2.1356 - 2.0974 0.94 3158 166 0.1973 0.2284 REMARK 3 20 2.0974 - 2.0619 0.94 3075 169 0.1963 0.2509 REMARK 3 21 2.0619 - 2.0286 0.94 3087 161 0.1962 0.2291 REMARK 3 22 2.0286 - 1.9974 0.93 3128 155 0.1966 0.2437 REMARK 3 23 1.9974 - 1.9680 0.94 3116 160 0.1915 0.2549 REMARK 3 24 1.9680 - 1.9403 0.94 3048 161 0.2025 0.2094 REMARK 3 25 1.9403 - 1.9141 0.93 3118 172 0.2026 0.2052 REMARK 3 26 1.9141 - 1.8892 0.93 3031 173 0.2142 0.2495 REMARK 3 27 1.8892 - 1.8656 0.93 3076 156 0.2276 0.2659 REMARK 3 28 1.8656 - 1.8431 0.93 3050 178 0.2318 0.2812 REMARK 3 29 1.8431 - 1.8217 0.93 3075 167 0.2222 0.3029 REMARK 3 30 1.8217 - 1.8000 0.89 2898 167 0.2324 0.3099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 38.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78140 REMARK 3 B22 (A**2) : 1.43400 REMARK 3 B33 (A**2) : -2.43470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4413 REMARK 3 ANGLE : 1.302 5962 REMARK 3 CHIRALITY : 0.087 658 REMARK 3 PLANARITY : 0.005 758 REMARK 3 DIHEDRAL : 15.210 1662 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 10:93 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8183 -13.9476 55.7424 REMARK 3 T TENSOR REMARK 3 T11: 0.4712 T22: 0.0646 REMARK 3 T33: 0.2112 T12: 0.0311 REMARK 3 T13: 0.1349 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.5911 L22: 0.4209 REMARK 3 L33: 0.3990 L12: 0.2271 REMARK 3 L13: 0.1344 L23: 0.0895 REMARK 3 S TENSOR REMARK 3 S11: -0.2385 S12: 0.0502 S13: -0.1793 REMARK 3 S21: 0.1703 S22: 0.1779 S23: 0.1379 REMARK 3 S31: 0.5668 S32: -0.1993 S33: 0.0859 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 10:93 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0124 23.5334 27.9302 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.1323 REMARK 3 T33: 0.2318 T12: 0.0308 REMARK 3 T13: 0.0073 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3625 L22: 0.6840 REMARK 3 L33: 0.6365 L12: 0.1552 REMARK 3 L13: 0.0318 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: 0.0103 S13: 0.1638 REMARK 3 S21: -0.0532 S22: 0.0642 S23: 0.1723 REMARK 3 S31: -0.1921 S32: -0.0787 S33: 0.0130 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 112:293 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3748 12.2700 54.2573 REMARK 3 T TENSOR REMARK 3 T11: 0.0686 T22: 0.1291 REMARK 3 T33: 0.0844 T12: -0.0093 REMARK 3 T13: 0.0145 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.4736 L22: 1.1369 REMARK 3 L33: 1.6778 L12: 0.7002 REMARK 3 L13: 0.1157 L23: 0.9860 REMARK 3 S TENSOR REMARK 3 S11: -0.0853 S12: 0.0015 S13: -0.0192 REMARK 3 S21: 0.0629 S22: 0.2083 S23: -0.0091 REMARK 3 S31: -0.0522 S32: 0.2268 S33: 0.1407 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 112:293 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1496 -0.9393 23.3045 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.0933 REMARK 3 T33: 0.0907 T12: 0.0051 REMARK 3 T13: -0.0102 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.5622 L22: 0.8975 REMARK 3 L33: 0.5531 L12: 0.1633 REMARK 3 L13: 0.1293 L23: 0.5448 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: 0.0523 S13: 0.0353 REMARK 3 S21: -0.0579 S22: 0.0014 S23: 0.0641 REMARK 3 S31: 0.0268 S32: -0.0085 S33: 0.0546 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ITJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54270 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ITH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M NH4I, 17% PEG 3,350, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.42050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.05950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.56800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.05950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.42050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.56800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 GLU A 22 REMARK 465 LEU A 23 REMARK 465 ASP A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 ASN A 170 REMARK 465 GLU A 171 REMARK 465 GLU A 172 REMARK 465 HIS A 173 REMARK 465 ASN A 174 REMARK 465 GLU A 175 REMARK 465 LEU A 176 REMARK 465 ARG A 177 REMARK 465 GLU A 178 REMARK 465 VAL A 179 REMARK 465 ASP A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 ALA A 183 REMARK 465 LYS A 184 REMARK 465 LYS A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 MET B 5 REMARK 465 SER B 6 REMARK 465 ARG B 177 REMARK 465 GLU B 178 REMARK 465 VAL B 179 REMARK 465 ASP B 180 REMARK 465 GLY B 181 REMARK 465 THR B 182 REMARK 465 ALA B 183 REMARK 465 LYS B 184 REMARK 465 LYS B 185 REMARK 465 ASN B 186 REMARK 465 GLY B 187 REMARK 465 GLY B 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 MET A 108 CG SD CE REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LEU B 7 CG CD1 CD2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 MET B 108 CG SD CE REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 HIS B 173 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 409 O HOH A 670 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 -151.75 -104.85 REMARK 500 CYS A 53 56.84 -154.67 REMARK 500 GLU A 85 102.04 -52.51 REMARK 500 MET A 108 -163.03 -69.02 REMARK 500 LYS A 137 -21.70 83.49 REMARK 500 ASP A 138 49.03 -141.13 REMARK 500 ASP A 156 65.66 -113.11 REMARK 500 ASP A 200 87.37 -151.24 REMARK 500 CYS B 53 56.48 -148.37 REMARK 500 LYS B 137 -18.35 85.17 REMARK 500 ASP B 138 49.93 -146.20 REMARK 500 ASP B 156 67.55 -112.89 REMARK 500 VAL B 201 -18.56 -48.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1HX A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1HX B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ITH RELATED DB: PDB REMARK 900 RELATED ID: 4ITI RELATED DB: PDB DBREF 4ITJ A 1 294 UNP Q13546 RIPK1_HUMAN 1 294 DBREF 4ITJ B 1 294 UNP Q13546 RIPK1_HUMAN 1 294 SEQADV 4ITJ ALA A 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 4ITJ ALA A 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 4ITJ ALA A 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 4ITJ ALA A 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQADV 4ITJ ALA B 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 4ITJ ALA B 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 4ITJ ALA B 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 4ITJ ALA B 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQRES 1 A 294 MET GLN PRO ASP MET SER LEU ASN VAL ILE LYS MET LYS SEQRES 2 A 294 SER SER ASP PHE LEU GLU SER ALA GLU LEU ASP SER GLY SEQRES 3 A 294 GLY PHE GLY LYS VAL SER LEU ALA PHE HIS ARG THR GLN SEQRES 4 A 294 GLY LEU MET ILE MET LYS THR VAL TYR LYS GLY PRO ASN SEQRES 5 A 294 CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU GLU ALA LYS SEQRES 6 A 294 MET MET ASN ARG LEU ARG HIS SER ARG VAL VAL LYS LEU SEQRES 7 A 294 LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SER LEU VAL SEQRES 8 A 294 MET GLU TYR MET GLU LYS GLY ASN LEU MET HIS VAL LEU SEQRES 9 A 294 LYS ALA GLU MET SER THR PRO LEU SER VAL LYS GLY ARG SEQRES 10 A 294 ILE ILE LEU GLU ILE ILE GLU GLY MET ALA TYR LEU HIS SEQRES 11 A 294 GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS PRO GLU ASN SEQRES 12 A 294 ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS ILE ALA ASP SEQRES 13 A 294 LEU GLY LEU ALA SER PHE LYS MET TRP SER LYS LEU ASN SEQRES 14 A 294 ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL ASP GLY THR SEQRES 15 A 294 ALA LYS LYS ASN GLY GLY THR LEU TYR TYR MET ALA PRO SEQRES 16 A 294 GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO THR GLU LYS SEQRES 17 A 294 SER ASP VAL TYR SER PHE ALA VAL VAL LEU TRP ALA ILE SEQRES 18 A 294 PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA ILE ALA GLU SEQRES 19 A 294 GLN GLN LEU ILE MET ALA ILE LYS SER GLY ASN ARG PRO SEQRES 20 A 294 ASP VAL ASP ASP ILE THR GLU TYR CYS PRO ARG GLU ILE SEQRES 21 A 294 ILE SER LEU MET LYS LEU CYS TRP GLU ALA ASN PRO GLU SEQRES 22 A 294 ALA ARG PRO THR PHE PRO GLY ILE GLU GLU LYS PHE ARG SEQRES 23 A 294 PRO PHE TYR LEU SER GLN LEU GLU SEQRES 1 B 294 MET GLN PRO ASP MET SER LEU ASN VAL ILE LYS MET LYS SEQRES 2 B 294 SER SER ASP PHE LEU GLU SER ALA GLU LEU ASP SER GLY SEQRES 3 B 294 GLY PHE GLY LYS VAL SER LEU ALA PHE HIS ARG THR GLN SEQRES 4 B 294 GLY LEU MET ILE MET LYS THR VAL TYR LYS GLY PRO ASN SEQRES 5 B 294 CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU GLU ALA LYS SEQRES 6 B 294 MET MET ASN ARG LEU ARG HIS SER ARG VAL VAL LYS LEU SEQRES 7 B 294 LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SER LEU VAL SEQRES 8 B 294 MET GLU TYR MET GLU LYS GLY ASN LEU MET HIS VAL LEU SEQRES 9 B 294 LYS ALA GLU MET SER THR PRO LEU SER VAL LYS GLY ARG SEQRES 10 B 294 ILE ILE LEU GLU ILE ILE GLU GLY MET ALA TYR LEU HIS SEQRES 11 B 294 GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS PRO GLU ASN SEQRES 12 B 294 ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS ILE ALA ASP SEQRES 13 B 294 LEU GLY LEU ALA SER PHE LYS MET TRP SER LYS LEU ASN SEQRES 14 B 294 ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL ASP GLY THR SEQRES 15 B 294 ALA LYS LYS ASN GLY GLY THR LEU TYR TYR MET ALA PRO SEQRES 16 B 294 GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO THR GLU LYS SEQRES 17 B 294 SER ASP VAL TYR SER PHE ALA VAL VAL LEU TRP ALA ILE SEQRES 18 B 294 PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA ILE ALA GLU SEQRES 19 B 294 GLN GLN LEU ILE MET ALA ILE LYS SER GLY ASN ARG PRO SEQRES 20 B 294 ASP VAL ASP ASP ILE THR GLU TYR CYS PRO ARG GLU ILE SEQRES 21 B 294 ILE SER LEU MET LYS LEU CYS TRP GLU ALA ASN PRO GLU SEQRES 22 B 294 ALA ARG PRO THR PHE PRO GLY ILE GLU GLU LYS PHE ARG SEQRES 23 B 294 PRO PHE TYR LEU SER GLN LEU GLU HET 1HX A 301 21 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET 1HX B 301 21 HET IOD B 302 1 HET IOD B 303 1 HET IOD B 304 1 HET IOD B 305 1 HETNAM 1HX N-[(1S)-1-(2-CHLORO-6-FLUOROPHENYL)ETHYL]-5-CYANO-1- HETNAM 2 1HX METHYL-1H-PYRROLE-2-CARBOXAMIDE HETNAM IOD IODIDE ION FORMUL 3 1HX 2(C15 H13 CL F N3 O) FORMUL 4 IOD 9(I 1-) FORMUL 14 HOH *578(H2 O) HELIX 1 1 LYS A 13 PHE A 17 5 5 HELIX 2 2 CYS A 53 GLU A 55 5 3 HELIX 3 3 HIS A 56 ARG A 69 1 14 HELIX 4 4 ASN A 99 LYS A 105 1 7 HELIX 5 5 PRO A 111 LYS A 132 1 22 HELIX 6 6 LYS A 140 GLU A 142 5 3 HELIX 7 7 PHE A 162 ASN A 169 1 8 HELIX 8 8 ALA A 194 LEU A 198 5 5 HELIX 9 9 THR A 206 ASN A 224 1 19 HELIX 10 10 ALA A 233 SER A 243 1 11 HELIX 11 11 ASP A 248 ILE A 252 5 5 HELIX 12 12 PRO A 257 TRP A 268 1 12 HELIX 13 13 ASN A 271 ARG A 275 5 5 HELIX 14 14 THR A 277 LEU A 293 1 17 HELIX 15 15 LYS B 13 SER B 15 5 3 HELIX 16 16 CYS B 53 GLU B 55 5 3 HELIX 17 17 HIS B 56 ARG B 69 1 14 HELIX 18 18 ASN B 99 LYS B 105 1 7 HELIX 19 19 PRO B 111 LYS B 132 1 22 HELIX 20 20 LYS B 140 GLU B 142 5 3 HELIX 21 21 PHE B 162 GLU B 171 1 10 HELIX 22 22 THR B 189 MET B 193 5 5 HELIX 23 23 ALA B 194 LEU B 198 5 5 HELIX 24 24 THR B 206 ASN B 224 1 19 HELIX 25 25 ALA B 233 GLY B 244 1 12 HELIX 26 26 ASP B 248 ILE B 252 5 5 HELIX 27 27 PRO B 257 TRP B 268 1 12 HELIX 28 28 ASN B 271 ARG B 275 5 5 HELIX 29 29 THR B 277 LEU B 293 1 17 SHEET 1 A 5 LYS A 11 MET A 12 0 SHEET 2 A 5 LEU A 78 GLU A 84 1 O VAL A 81 N MET A 12 SHEET 3 A 5 LYS A 87 GLU A 93 -1 O VAL A 91 N GLY A 80 SHEET 4 A 5 GLY A 40 LYS A 49 -1 N LYS A 45 O LEU A 90 SHEET 5 A 5 LYS A 30 HIS A 36 -1 N SER A 32 O MET A 44 SHEET 1 B 2 ILE A 144 VAL A 146 0 SHEET 2 B 2 ILE A 152 ILE A 154 -1 O LYS A 153 N LEU A 145 SHEET 1 C 6 LYS B 11 MET B 12 0 SHEET 2 C 6 LEU B 78 GLU B 84 1 O VAL B 81 N MET B 12 SHEET 3 C 6 LYS B 87 MET B 92 -1 O VAL B 91 N LEU B 79 SHEET 4 C 6 GLY B 40 LYS B 49 -1 N ILE B 43 O MET B 92 SHEET 5 C 6 LYS B 30 HIS B 36 -1 N SER B 32 O MET B 44 SHEET 6 C 6 PHE B 17 GLU B 22 -1 N SER B 20 O LEU B 33 SHEET 1 D 2 ILE B 144 VAL B 146 0 SHEET 2 D 2 ILE B 152 ILE B 154 -1 O LYS B 153 N LEU B 145 SITE 1 AC1 11 MET A 67 LEU A 70 VAL A 76 LEU A 78 SITE 2 AC1 11 LEU A 90 ILE A 154 ALA A 155 ASP A 156 SITE 3 AC1 11 SER A 161 PHE A 162 HOH A 415 SITE 1 AC2 1 ILE A 43 SITE 1 AC3 1 ILE A 232 SITE 1 AC4 3 ARG A 74 HOH A 433 ARG B 286 SITE 1 AC5 12 LYS B 45 MET B 67 LEU B 70 VAL B 76 SITE 2 AC5 12 LEU B 78 LEU B 90 ILE B 154 ALA B 155 SITE 3 AC5 12 ASP B 156 SER B 161 PHE B 162 HOH B 407 SITE 1 AC6 1 ASN B 271 CRYST1 46.841 97.136 128.119 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007805 0.00000