PDB Short entry for 4IVR HEADER TRANSFERASE 23-JAN-13 4IVR TITLE CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 TITLE 2 IN COMPLEX WITH IN52/10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 46-376; COMPND 5 SYNONYM: HSV1-TK; COMPND 6 EC: 2.7.1.21; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: HHV-1; SOURCE 4 ORGANISM_TAXID: 10299; SOURCE 5 STRAIN: 17; SOURCE 6 GENE: TK, TK (UL23), UL23; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS DNA SYNTHESIS, PET IMAGING TRACER, ATP BINDING, NUCLEOTIDE BINDING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PERNOT,I.NOVAKOVIC,Y.WESTERMAIER,R.PEROZZO,S.RAIC-MALIC,L.SCAPOZZA REVDAT 4 20-SEP-23 4IVR 1 REMARK REVDAT 3 15-NOV-17 4IVR 1 REMARK REVDAT 2 02-OCT-13 4IVR 1 AUTHOR SOURCE REVDAT 1 06-FEB-13 4IVR 0 JRNL AUTH L.PERNOT,I.NOVAKOVIC,R.PEROZZO,S.RAIC-MALIC,L.SCAPOZZA JRNL TITL NEW THYMINE DERIVATIVES AS HSV1-TK LIGAND FOR THE JRNL TITL 2 DEVELOPMENT OF PET IMAGING TRACER JRNL REF TO BE PUBLISHED REF NOW ASSIGNED AS JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.MARTIC,L.PERNOT,Y.WESTERMAIER,R.PEROZZO,T.G.KRALJEVIC, REMARK 1 AUTH 2 S.KRISTAFOR,S.RAIC-MALIC,L.SCAPOZZA,S.AMETAMEY REMARK 1 TITL SYNTHESIS, CRYSTAL STRUCTURE, AND IN VITRO BIOLOGICAL REMARK 1 TITL 2 EVALUATION OF C-6 PYRIMIDINE DERIVATIVES: NEW LEAD REMARK 1 TITL 3 STRUCTURES FOR MONITORING GENE EXPRESSION IN VIVO. REMARK 1 REF NUCLEOSIDES NUCLEOTIDES V. 30 293 2011 REMARK 1 REF 2 NUCLEIC ACIDS REMARK 1 REFN ISSN 1525-7770 REMARK 1 PMID 21623543 REMARK 1 DOI 10.1080/15257770.2011.581258 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.KRISTAFOR,I.NOVAKOVIC,T.GAZIVODA KRALJEVIC, REMARK 1 AUTH 2 S.KRALJEVIC PAVELIC,P.LUCIN,Y.WESTERMAIER,L.PERNOT, REMARK 1 AUTH 3 L.SCAPOZZA,S.M.AMETAMEY,S.RAIC-MALIC REMARK 1 TITL A NEW N-METHYL THYMINE DERIVATIVE COMPRISING A REMARK 1 TITL 2 DIHYDROXYISOBUTENYL UNIT AS LIGAND FOR THYMIDINE KINASE OF REMARK 1 TITL 3 HERPES SIMPLEX VIRUS TYPE 1 (HSV-1 TK). REMARK 1 REF BIOORG.MED.CHEM.LETT. V. 21 6161 2011 REMARK 1 REFN ISSN 0960-894X REMARK 1 PMID 21911293 REMARK 1 DOI 10.1016/J.BMCL.2011.07.115 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 27327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3356 - 5.1674 1.00 2783 147 0.1915 0.2267 REMARK 3 2 5.1674 - 4.1028 0.99 2660 139 0.1577 0.2000 REMARK 3 3 4.1028 - 3.5846 0.98 2608 138 0.1733 0.2183 REMARK 3 4 3.5846 - 3.2570 0.98 2581 136 0.1873 0.2627 REMARK 3 5 3.2570 - 3.0236 0.98 2587 136 0.2289 0.2936 REMARK 3 6 3.0236 - 2.8454 0.98 2565 135 0.2390 0.2979 REMARK 3 7 2.8454 - 2.7029 0.98 2564 135 0.2372 0.3151 REMARK 3 8 2.7029 - 2.5853 0.97 2534 133 0.2426 0.3688 REMARK 3 9 2.5853 - 2.4858 0.97 2538 134 0.2263 0.3625 REMARK 3 10 2.4858 - 2.4000 0.97 2540 134 0.2192 0.3443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4894 REMARK 3 ANGLE : 1.108 6690 REMARK 3 CHIRALITY : 0.072 780 REMARK 3 PLANARITY : 0.006 850 REMARK 3 DIHEDRAL : 13.704 1800 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27904 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : 0.12400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : 0.33000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3F0T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9-1.2 M LITHIUM SULFATE, 1 MM DTT, REMARK 280 0.1 M HEPES, PH 7.5-8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.03750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.03750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.52100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.56350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.52100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.56350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.03750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.52100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.56350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.03750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.52100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.56350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 606 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 148 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 465 HIS A 151 REMARK 465 ALA A 152 REMARK 465 ARG A 220 REMARK 465 GLN A 221 REMARK 465 ARG A 222 REMARK 465 THR A 265 REMARK 465 ALA A 266 REMARK 465 VAL A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 ALA A 375 REMARK 465 ASN A 376 REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 SER B 150 REMARK 465 HIS B 151 REMARK 465 ALA B 152 REMARK 465 SER B 263 REMARK 465 GLY B 264 REMARK 465 THR B 265 REMARK 465 ALA B 266 REMARK 465 VAL B 267 REMARK 465 PRO B 268 REMARK 465 PRO B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ALA B 272 REMARK 465 GLU B 273 REMARK 465 PRO B 274 REMARK 465 GLN B 275 REMARK 465 SER B 276 REMARK 465 ASN B 277 REMARK 465 ALA B 278 REMARK 465 GLY B 279 REMARK 465 ALA B 375 REMARK 465 ASN B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 364 CG CD1 CD2 REMARK 470 LEU B 72 CG CD1 CD2 REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 LEU B 139 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 76 50.82 -116.02 REMARK 500 ASP A 77 -1.27 -161.52 REMARK 500 VAL A 90 -81.75 -122.74 REMARK 500 ALA A 93 -170.55 179.12 REMARK 500 ARG A 163 162.47 74.16 REMARK 500 LEU A 170 -60.03 -147.29 REMARK 500 SER A 263 -132.99 -171.41 REMARK 500 ASP B 55 -149.83 -132.51 REMARK 500 ASP B 77 -21.84 -149.05 REMARK 500 VAL B 90 -60.95 -131.14 REMARK 500 ARG B 163 152.62 79.56 REMARK 500 LEU B 170 -61.07 -139.10 REMARK 500 ARG B 220 63.23 -152.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N50 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N50 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F0T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH N-METHYL-DHBT REMARK 900 RELATED ID: 3RDP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH N-METHYL-FHBT REMARK 900 RELATED ID: 1E2P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH DHBT REMARK 900 RELATED ID: 4IVP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH IN51/20 REMARK 900 RELATED ID: 4IVQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE 1 IN COMPLEX WITH IN43/5 DBREF 4IVR A 46 376 UNP P03176 KITH_HHV11 46 376 DBREF 4IVR B 46 376 UNP P03176 KITH_HHV11 46 376 SEQRES 1 A 331 MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO HIS SEQRES 2 A 331 GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL ALA SEQRES 3 A 331 LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU PRO SEQRES 4 A 331 MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR ILE SEQRES 5 A 331 ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN GLY SEQRES 6 A 331 GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SER SEQRES 7 A 331 ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR ASP SEQRES 8 A 331 ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SER SEQRES 9 A 331 SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE ASP SEQRES 10 A 331 ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA ALA SEQRES 11 A 331 ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL LEU SEQRES 12 A 331 ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY THR SEQRES 13 A 331 ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS ILE SEQRES 14 A 331 ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG LEU SEQRES 15 A 331 ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR GLY SEQRES 16 A 331 LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY GLY SEQRES 17 A 331 SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR ALA SEQRES 18 A 331 VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA GLY SEQRES 19 A 331 PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU PHE SEQRES 20 A 331 ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU TYR SEQRES 21 A 331 ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS ARG SEQRES 22 A 331 LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP GLN SEQRES 23 A 331 SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU THR SEQRES 24 A 331 SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SER SEQRES 25 A 331 ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA ARG SEQRES 26 A 331 GLU MET GLY GLU ALA ASN SEQRES 1 B 331 MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO HIS SEQRES 2 B 331 GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL ALA SEQRES 3 B 331 LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU PRO SEQRES 4 B 331 MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR ILE SEQRES 5 B 331 ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN GLY SEQRES 6 B 331 GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SER SEQRES 7 B 331 ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR ASP SEQRES 8 B 331 ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SER SEQRES 9 B 331 SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE ASP SEQRES 10 B 331 ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA ALA SEQRES 11 B 331 ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL LEU SEQRES 12 B 331 ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY THR SEQRES 13 B 331 ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS ILE SEQRES 14 B 331 ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG LEU SEQRES 15 B 331 ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR GLY SEQRES 16 B 331 LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY GLY SEQRES 17 B 331 SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR ALA SEQRES 18 B 331 VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA GLY SEQRES 19 B 331 PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU PHE SEQRES 20 B 331 ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU TYR SEQRES 21 B 331 ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS ARG SEQRES 22 B 331 LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP GLN SEQRES 23 B 331 SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU THR SEQRES 24 B 331 SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SER SEQRES 25 B 331 ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA ARG SEQRES 26 B 331 GLU MET GLY GLU ALA ASN HET N50 A 501 17 HET SO4 A 502 5 HET N50 B 401 17 HET SO4 B 402 5 HETNAM N50 2-[(2,6-DIMETHOXY-5-METHYLPYRIMIDIN-4-YL) HETNAM 2 N50 METHYLIDENE]PROPANE-1,3-DIOL HETNAM SO4 SULFATE ION FORMUL 3 N50 2(C11 H16 N2 O4) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *113(H2 O) HELIX 1 1 GLY A 61 GLY A 73 1 13 HELIX 2 2 PRO A 84 VAL A 90 1 7 HELIX 3 3 GLU A 95 GLN A 109 1 15 HELIX 4 4 SER A 113 ALA A 140 1 28 HELIX 5 5 PRO A 165 LEU A 170 1 6 HELIX 6 6 LEU A 170 MET A 179 1 10 HELIX 7 7 THR A 183 LEU A 193 1 11 HELIX 8 8 PRO A 209 LYS A 219 1 11 HELIX 9 9 ASP A 228 CYS A 251 1 24 HELIX 10 10 SER A 254 TRP A 259 1 6 HELIX 11 11 GLY A 260 LEU A 262 5 3 HELIX 12 12 HIS A 283 ARG A 293 5 11 HELIX 13 13 ALA A 294 LEU A 298 5 5 HELIX 14 14 TYR A 305 ARG A 320 1 16 HELIX 15 15 SER A 332 SER A 345 1 14 HELIX 16 16 GLY A 356 GLY A 373 1 18 HELIX 17 17 GLY B 61 GLY B 73 1 13 HELIX 18 18 PRO B 84 VAL B 90 1 7 HELIX 19 19 GLU B 95 GLN B 109 1 15 HELIX 20 20 SER B 113 ALA B 140 1 28 HELIX 21 21 PRO B 165 LEU B 170 1 6 HELIX 22 22 LEU B 170 MET B 179 1 10 HELIX 23 23 THR B 183 ALA B 192 1 10 HELIX 24 24 PRO B 209 LYS B 219 1 11 HELIX 25 25 ASP B 228 CYS B 251 1 24 HELIX 26 26 SER B 254 TRP B 259 1 6 HELIX 27 27 GLY B 260 LEU B 262 5 3 HELIX 28 28 HIS B 283 ARG B 293 5 11 HELIX 29 29 ALA B 294 LEU B 298 5 5 HELIX 30 30 TYR B 305 SER B 321 1 17 HELIX 31 31 SER B 332 LEU B 343 1 12 HELIX 32 32 THR B 344 MET B 347 5 4 HELIX 33 33 GLY B 356 GLY B 373 1 18 SHEET 1 A 5 ILE A 78 VAL A 81 0 SHEET 2 A 5 LEU A 157 ASP A 162 1 O ILE A 160 N VAL A 81 SHEET 3 A 5 THR A 48 ILE A 54 1 N LEU A 50 O LEU A 159 SHEET 4 A 5 THR A 350 VAL A 352 -1 O THR A 350 N LEU A 49 SHEET 5 A 5 ILE A 143 GLU A 146 -1 N GLY A 145 O HIS A 351 SHEET 1 B 5 ILE A 78 VAL A 81 0 SHEET 2 B 5 LEU A 157 ASP A 162 1 O ILE A 160 N VAL A 81 SHEET 3 B 5 THR A 48 ILE A 54 1 N LEU A 50 O LEU A 159 SHEET 4 B 5 ASN A 202 ALA A 207 1 O ASN A 202 N TYR A 53 SHEET 5 B 5 HIS A 323 ASP A 328 1 O PHE A 325 N LEU A 205 SHEET 1 C 5 ILE B 78 VAL B 81 0 SHEET 2 C 5 LEU B 157 ASP B 162 1 O ILE B 160 N VAL B 81 SHEET 3 C 5 THR B 48 ILE B 54 1 N LEU B 50 O LEU B 159 SHEET 4 C 5 THR B 350 VAL B 352 -1 O THR B 350 N LEU B 49 SHEET 5 C 5 ILE B 143 GLU B 146 -1 N GLY B 145 O HIS B 351 SHEET 1 D 5 ILE B 78 VAL B 81 0 SHEET 2 D 5 LEU B 157 ASP B 162 1 O ILE B 160 N VAL B 81 SHEET 3 D 5 THR B 48 ILE B 54 1 N LEU B 50 O LEU B 159 SHEET 4 D 5 ASN B 202 ALA B 207 1 O VAL B 204 N TYR B 53 SHEET 5 D 5 HIS B 323 ASP B 328 1 O LEU B 327 N LEU B 205 SITE 1 AC1 10 HIS A 58 GLU A 83 TRP A 88 TYR A 101 SITE 2 AC1 10 GLN A 125 MET A 128 ARG A 163 ALA A 168 SITE 3 AC1 10 TYR A 172 HOH A 644 SITE 1 AC2 7 HIS A 58 GLY A 59 MET A 60 GLY A 61 SITE 2 AC2 7 LYS A 62 THR A 63 HOH A 622 SITE 1 AC3 12 HIS B 58 ILE B 97 ILE B 100 TYR B 101 SITE 2 AC3 12 GLN B 125 MET B 128 ARG B 163 ALA B 168 SITE 3 AC3 12 TYR B 172 HOH B 534 HOH B 548 HOH B 566 SITE 1 AC4 8 HIS B 58 GLY B 59 MET B 60 GLY B 61 SITE 2 AC4 8 LYS B 62 THR B 63 ARG B 220 ARG B 222 CRYST1 113.042 115.127 108.075 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008846 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008686 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009253 0.00000