PDB Short entry for 4IYT HEADER TOXIN 29-JAN-13 4IYT TITLE STRUCTURE OF THE Y184A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S TITLE 2 COMPONENT FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUKS-PV; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 29-312; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS PHAGE PVL; SOURCE 3 ORGANISM_TAXID: 71366; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS BI-COMPONENT LEUCOTOXIN, STAPHYLOCOCCUS AUREUS, S COMPONENT KEYWDS 2 LEUCOCIDIN, BETA-BARREL PORE FORMING TOXIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR F.GUERIN,B.J.LAVENTIE,G.PREVOST,L.MOUREY,L.MAVEYRAUD REVDAT 4 08-NOV-23 4IYT 1 REMARK SEQADV REVDAT 3 23-APR-14 4IYT 1 JRNL REVDAT 2 12-MAR-14 4IYT 1 JRNL REVDAT 1 29-JAN-14 4IYT 0 JRNL AUTH B.J.LAVENTIE,F.GUERIN,L.MOUREY,M.Y.TAWK,E.JOVER,L.MAVEYRAUD, JRNL AUTH 2 G.PREVOST JRNL TITL RESIDUES ESSENTIAL FOR PANTON-VALENTINE LEUKOCIDIN S JRNL TITL 2 COMPONENT BINDING TO ITS CELL RECEPTOR SUGGEST BOTH JRNL TITL 3 PLASTICITY AND ADAPTABILITY IN ITS INTERACTION SURFACE JRNL REF PLOS ONE V. 9 92094 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24643034 JRNL DOI 10.1371/JOURNAL.PONE.0092094 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.GUILLET,D.KELLER,G.PREVOST,L.MOUREY REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC DATA OF A REMARK 1 TITL 2 LEUCOTOXIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 310 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH V.GUILLET,P.ROBLIN,S.WERNER,M.CORAIOLA,G.MENESTRINA, REMARK 1 AUTH 2 H.MONTEIL,G.PREVOST,L.MOUREY REMARK 1 TITL CRYSTAL STRUCTURE OF LEUCOTOXIN S COMPONENT NEW INSIGHT INTO REMARK 1 TITL 2 THE STAPHYLOCOCCAL BETA-BARREL PORE-FORMING TOXINS REMARK 1 REF J.BIOL.CHEM. V. 279 41028 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.D.PEDELACQ,L.MAVEYRAUD,G.PREVOST,L.BABA-MOUSSA,A.GONZALEZ, REMARK 1 AUTH 2 E.COURCELLE,W.SHEPARD,H.MONTEIL,J.P.SAMAMA,L.MOUREY REMARK 1 TITL THE STRUCTURE OF A STAPHYLOCOCCUS AUREUS LEUCOCIDIN REMARK 1 TITL 2 COMPONENT (LUKF-PV) REVEALS THE FOLD OF THE WATER-SOLUBLE REMARK 1 TITL 3 SPECIES OF A FAMILY OF TRANSMEMBRANE PORE-FORMING TOXINS REMARK 1 REF STRUCTURE V. 7 277 1999 REMARK 1 REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1548 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2979 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2339 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2819 REMARK 3 BIN R VALUE (WORKING SET) : 0.2317 REMARK 3 BIN FREE R VALUE : 0.2729 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.37 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 160 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.82970 REMARK 3 B22 (A**2) : 7.82970 REMARK 3 B33 (A**2) : -15.65940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.371 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.151 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2274 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3118 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 760 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 69 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 320 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2274 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 290 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2521 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.14 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.47 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -13.0419 0.8928 12.4126 REMARK 3 T TENSOR REMARK 3 T11: -0.2544 T22: -0.2811 REMARK 3 T33: -0.3135 T12: 0.0038 REMARK 3 T13: 0.0973 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 4.2802 L22: 2.7500 REMARK 3 L33: 1.1903 L12: -1.6516 REMARK 3 L13: 0.5945 L23: 0.1566 REMARK 3 S TENSOR REMARK 3 S11: 0.1239 S12: -0.1304 S13: 0.1782 REMARK 3 S21: -0.0040 S22: -0.1087 S23: 0.0026 REMARK 3 S31: 0.0143 S32: 0.0428 S33: -0.0152 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98012 REMARK 200 MONOCHROMATOR : SILICON MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30803 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.07000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.91500 REMARK 200 R SYM FOR SHELL (I) : 0.91500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1T5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG200, 0.1M NAMES, PH 6.50, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.44500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.43500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.72250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.43500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.16750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.43500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.43500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.72250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.43500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.43500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.16750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.44500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 PRO A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 ASP A 1 REMARK 465 ASN A 2 REMARK 465 SER A 122 REMARK 465 THR A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 HIS A 245 REMARK 465 TYR A 246 REMARK 465 GLY A 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CD CE NZ REMARK 470 LYS A 39 CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 ASN A 65 CG OD1 ND2 REMARK 470 LYS A 70 CD CE NZ REMARK 470 LYS A 97 CE NZ REMARK 470 LEU A 167 CG CD1 CD2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 HIS A 173 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 241 NE CZ NH1 NH2 REMARK 470 THR A 244 OG1 CG2 REMARK 470 ASN A 248 CG OD1 ND2 REMARK 470 SER A 249 OG REMARK 470 ILE A 256 CD1 REMARK 470 LYS A 274 CE NZ REMARK 470 LYS A 281 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 51 -167.22 -120.57 REMARK 500 LYS A 64 -130.16 45.89 REMARK 500 GLN A 139 48.79 -147.51 REMARK 500 ASN A 161 -70.21 -119.29 REMARK 500 THR A 165 -154.50 -90.89 REMARK 500 PHE A 178 -4.96 76.42 REMARK 500 SER A 204 -59.81 -123.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T5R RELATED DB: PDB REMARK 900 STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM REMARK 900 STAPHYLOCOCCUS AUREUS REMARK 900 RELATED ID: 1PVL RELATED DB: PDB REMARK 900 STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN F COMPONENT FROM REMARK 900 STAPHYLOCOCCUS AUREUS REMARK 900 RELATED ID: 4IYA RELATED DB: PDB REMARK 900 STRUCTURE OF THE Y250A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S REMARK 900 COMPONENT FROM STAPHYLOCOCCUS AUREUS REMARK 900 RELATED ID: 4IYC RELATED DB: PDB REMARK 900 STRUCTURE OF THE T244A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S REMARK 900 COMPONENT FROM STAPHYLOCOCCUS AUREUS REMARK 900 RELATED ID: 4IZL RELATED DB: PDB REMARK 900 STRUCTURE OF THE N248A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S REMARK 900 COMPONENT FROM STAPHYLOCOCCUS AUREUS REMARK 900 RELATED ID: 4J0O RELATED DB: PDB REMARK 900 STRUCTURE OF THE Y246A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S REMARK 900 COMPONENT FROM STAPHYLOCOCCUS AUREUS DBREF 4IYT A 1 284 UNP O80066 O80066_9CAUD 29 312 SEQADV 4IYT GLY A -7 UNP O80066 EXPRESSION TAG SEQADV 4IYT PRO A -6 UNP O80066 EXPRESSION TAG SEQADV 4IYT LEU A -5 UNP O80066 EXPRESSION TAG SEQADV 4IYT GLY A -4 UNP O80066 EXPRESSION TAG SEQADV 4IYT SER A -3 UNP O80066 EXPRESSION TAG SEQADV 4IYT PRO A -2 UNP O80066 EXPRESSION TAG SEQADV 4IYT GLU A -1 UNP O80066 EXPRESSION TAG SEQADV 4IYT PHE A 0 UNP O80066 EXPRESSION TAG SEQADV 4IYT ALA A 184 UNP O80066 TYR 212 ENGINEERED MUTATION SEQRES 1 A 292 GLY PRO LEU GLY SER PRO GLU PHE ASP ASN ASN ILE GLU SEQRES 2 A 292 ASN ILE GLY ASP GLY ALA GLU VAL VAL LYS ARG THR GLU SEQRES 3 A 292 ASP THR SER SER ASP LYS TRP GLY VAL THR GLN ASN ILE SEQRES 4 A 292 GLN PHE ASP PHE VAL LYS ASP LYS LYS TYR ASN LYS ASP SEQRES 5 A 292 ALA LEU ILE LEU LYS MET GLN GLY PHE ILE ASN SER LYS SEQRES 6 A 292 THR THR TYR TYR ASN TYR LYS ASN THR ASP HIS ILE LYS SEQRES 7 A 292 ALA MET ARG TRP PRO PHE GLN TYR ASN ILE GLY LEU LYS SEQRES 8 A 292 THR ASN ASP PRO ASN VAL ASP LEU ILE ASN TYR LEU PRO SEQRES 9 A 292 LYS ASN LYS ILE ASP SER VAL ASN VAL SER GLN THR LEU SEQRES 10 A 292 GLY TYR ASN ILE GLY GLY ASN PHE ASN SER GLY PRO SER SEQRES 11 A 292 THR GLY GLY ASN GLY SER PHE ASN TYR SER LYS THR ILE SEQRES 12 A 292 SER TYR ASN GLN GLN ASN TYR ILE SER GLU VAL GLU HIS SEQRES 13 A 292 GLN ASN SER LYS SER VAL GLN TRP GLY ILE LYS ALA ASN SEQRES 14 A 292 SER PHE ILE THR SER LEU GLY LYS MET SER GLY HIS ASP SEQRES 15 A 292 PRO ASN LEU PHE VAL GLY TYR LYS PRO ALA SER GLN ASN SEQRES 16 A 292 PRO ARG ASP TYR PHE VAL PRO ASP ASN GLU LEU PRO PRO SEQRES 17 A 292 LEU VAL HIS SER GLY PHE ASN PRO SER PHE ILE ALA THR SEQRES 18 A 292 VAL SER HIS GLU LYS GLY SER GLY ASP THR SER GLU PHE SEQRES 19 A 292 GLU ILE THR TYR GLY ARG ASN MET ASP VAL THR HIS ALA SEQRES 20 A 292 THR ARG ARG THR THR HIS TYR GLY ASN SER TYR LEU GLU SEQRES 21 A 292 GLY SER ARG ILE HIS ASN ALA PHE VAL ASN ARG ASN TYR SEQRES 22 A 292 THR VAL LYS TYR GLU VAL ASN TRP LYS THR HIS GLU ILE SEQRES 23 A 292 LYS VAL LYS GLY HIS ASN HET MES A 301 50 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 MES C6 H13 N O4 S FORMUL 3 HOH *106(H2 O) HELIX 1 1 ASN A 187 PHE A 192 5 6 HELIX 2 2 PRO A 194 LEU A 198 5 5 HELIX 3 3 PRO A 199 SER A 204 1 6 SHEET 1 A 6 ILE A 4 GLY A 8 0 SHEET 2 A 6 ALA A 11 SER A 22 -1 O VAL A 13 N GLU A 5 SHEET 3 A 6 VAL A 27 ASP A 38 -1 O PHE A 33 N ARG A 16 SHEET 4 A 6 LYS A 43 ASN A 55 -1 O ILE A 47 N ASP A 34 SHEET 5 A 6 PHE A 210 GLU A 217 -1 O PHE A 210 N MET A 50 SHEET 6 A 6 VAL A 89 LEU A 95 -1 N ASP A 90 O SER A 215 SHEET 1 B 5 ILE A 4 GLY A 8 0 SHEET 2 B 5 ALA A 11 SER A 22 -1 O VAL A 13 N GLU A 5 SHEET 3 B 5 VAL A 27 ASP A 38 -1 O PHE A 33 N ARG A 16 SHEET 4 B 5 LYS A 43 ASN A 55 -1 O ILE A 47 N ASP A 34 SHEET 5 B 5 GLY A 205 PHE A 206 -1 O PHE A 206 N ILE A 54 SHEET 1 C 4 THR A 59 ASN A 62 0 SHEET 2 C 4 ILE A 69 THR A 84 -1 O ARG A 73 N THR A 59 SHEET 3 C 4 SER A 153 ALA A 160 -1 O TRP A 156 N ILE A 80 SHEET 4 C 4 TYR A 142 ASN A 150 -1 N HIS A 148 O GLN A 155 SHEET 1 D 5 THR A 59 ASN A 62 0 SHEET 2 D 5 ILE A 69 THR A 84 -1 O ARG A 73 N THR A 59 SHEET 3 D 5 THR A 223 ARG A 242 -1 O ALA A 239 N LYS A 70 SHEET 4 D 5 TYR A 250 ASN A 272 -1 O TYR A 269 N PHE A 226 SHEET 5 D 5 ILE A 278 HIS A 283 -1 O LYS A 279 N GLU A 270 SHEET 1 E 3 ASN A 116 ASN A 118 0 SHEET 2 E 3 ASN A 104 ASN A 112 -1 N GLY A 110 O ASN A 118 SHEET 3 E 3 TYR A 131 ASN A 138 -1 O TYR A 137 N VAL A 105 SHEET 1 F 2 SER A 162 ILE A 164 0 SHEET 2 F 2 LYS A 169 SER A 171 -1 O MET A 170 N PHE A 163 CISPEP 1 LEU A 95 PRO A 96 0 -2.78 SITE 1 AC1 11 GLN A 77 ASN A 85 ASP A 86 PRO A 87 SITE 2 AC1 11 GLU A 145 GLU A 147 ASN A 150 LYS A 152 SITE 3 AC1 11 GLY A 157 LYS A 159 HOH A 503 CRYST1 104.870 104.870 106.890 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009536 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009355 0.00000