PDB Short entry for 4JA3 HEADER TRANSPORT PROTEIN 18-FEB-13 4JA3 TITLE PARTIALLY OCCLUDED INWARD OPEN CONFORMATION OF THE XYLOSE TRANSPORTER TITLE 2 XYLE FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-XYLOSE-PROTON SYMPORTER; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: XYLE; COMPND 5 SYNONYM: D-XYLOSE TRANSPORTER; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: XYLE, B4031, JW3991; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PTH27 KEYWDS MFS GENERAL SUBSTRATE TRANSPORTER, XYLOSE TRANSPORTER, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.M.QUISTGAARD,C.LOW,P.MOBERG,L.TRESAUGUES,P.NORDLUND REVDAT 3 28-FEB-24 4JA3 1 REMARK SEQADV LINK REVDAT 2 17-JUL-13 4JA3 1 JRNL REVDAT 1 01-MAY-13 4JA3 0 JRNL AUTH E.M.QUISTGAARD,C.LOW,P.MOBERG,L.TRESAUGUES,P.NORDLUND JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE TRANSPORT IN THE JRNL TITL 2 GLUT-HOMOLOGY FAMILY OF MONOSACCHARIDE TRANSPORTERS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 766 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 23624861 JRNL DOI 10.1038/NSMB.2569 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.3 REMARK 3 NUMBER OF REFLECTIONS : 17321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.287 REMARK 3 R VALUE (WORKING SET) : 0.285 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.750 REMARK 3 FREE R VALUE TEST SET COUNT : 1342 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 4.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.34 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1269 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2340 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1174 REMARK 3 BIN R VALUE (WORKING SET) : 0.2333 REMARK 3 BIN FREE R VALUE : 0.2416 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 95 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 145.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 232.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 66.68810 REMARK 3 B22 (A**2) : 4.87090 REMARK 3 B33 (A**2) : -71.55900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.89540 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 1.367 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.861 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.794 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6785 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9228 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2184 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 101 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1000 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6785 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 896 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 4 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8652 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 24.14 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|8 - A|465 } REMARK 3 ORIGIN FOR THE GROUP (A): 261.2511 121.8030 30.1101 REMARK 3 T TENSOR REMARK 3 T11: -0.5876 T22: -0.5029 REMARK 3 T33: 0.3027 T12: 0.4094 REMARK 3 T13: -0.1102 T23: -0.1257 REMARK 3 L TENSOR REMARK 3 L11: 18.9605 L22: 13.9206 REMARK 3 L33: 2.9106 L12: 0.5628 REMARK 3 L13: 1.3855 L23: -1.0715 REMARK 3 S TENSOR REMARK 3 S11: 0.2138 S12: -0.5600 S13: -0.3246 REMARK 3 S21: 0.6418 S22: -0.2371 S23: 0.7196 REMARK 3 S31: 0.0438 S32: -0.4211 S33: 0.0233 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|7 - B|471 } REMARK 3 ORIGIN FOR THE GROUP (A): 325.8098 120.4410 25.5926 REMARK 3 T TENSOR REMARK 3 T11: -0.6618 T22: -0.2374 REMARK 3 T33: 0.2280 T12: 0.3704 REMARK 3 T13: -0.1637 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 19.5639 L22: 10.1825 REMARK 3 L33: 6.2011 L12: -1.1450 REMARK 3 L13: -0.5635 L23: -5.6252 REMARK 3 S TENSOR REMARK 3 S11: 0.1778 S12: -0.3728 S13: 0.3976 REMARK 3 S21: 0.4006 S22: -0.2240 S23: -0.8961 REMARK 3 S31: -0.5274 S32: 0.7376 S33: 0.0462 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL; SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33439 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 29.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG 400, 4% 2-METHYL-2,4-PENTANE REMARK 280 DIOL (MPD), 0.2% (W/V) OCTYL GLUCOSENEOPENTYL GLYCOL (OGNG), 5 REMARK 280 MM CDCL2, 5 MM LUTETIUM ACETATE, 100 MM TEMPERATURE 277K, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 123.44000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 123.44000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 LYS A 265 REMARK 465 THR A 266 REMARK 465 GLY A 267 REMARK 465 GLY A 268 REMARK 465 ARG A 269 REMARK 465 LEU A 270 REMARK 465 LEU A 271 REMARK 465 MET A 272 REMARK 465 PHE A 273 REMARK 465 GLY A 274 REMARK 465 VAL A 275 REMARK 465 PHE A 304 REMARK 465 LYS A 305 REMARK 465 THR A 306 REMARK 465 LEU A 307 REMARK 465 GLY A 308 REMARK 465 ALA A 309 REMARK 465 ILE A 398 REMARK 465 PHE A 399 REMARK 465 PRO A 400 REMARK 465 ASN A 401 REMARK 465 ALA A 402 REMARK 465 ILE A 403 REMARK 465 ARG A 404 REMARK 465 GLY A 405 REMARK 465 LYS A 406 REMARK 465 TRP A 434 REMARK 465 LEU A 435 REMARK 465 VAL A 436 REMARK 465 ALA A 437 REMARK 465 HIS A 438 REMARK 465 PHE A 439 REMARK 465 THR A 466 REMARK 465 LYS A 467 REMARK 465 GLY A 468 REMARK 465 LYS A 469 REMARK 465 THR A 470 REMARK 465 LEU A 471 REMARK 465 GLU A 472 REMARK 465 GLU A 473 REMARK 465 LEU A 474 REMARK 465 GLU A 475 REMARK 465 ALA A 476 REMARK 465 LEU A 477 REMARK 465 TRP A 478 REMARK 465 GLU A 479 REMARK 465 PRO A 480 REMARK 465 GLU A 481 REMARK 465 THR A 482 REMARK 465 LYS A 483 REMARK 465 LYS A 484 REMARK 465 THR A 485 REMARK 465 GLY B 1 REMARK 465 ASN B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 TYR B 5 REMARK 465 ASN B 6 REMARK 465 LYS B 265 REMARK 465 THR B 266 REMARK 465 GLY B 267 REMARK 465 GLY B 268 REMARK 465 ARG B 269 REMARK 465 LEU B 270 REMARK 465 LEU B 271 REMARK 465 MET B 272 REMARK 465 PHE B 273 REMARK 465 GLY B 274 REMARK 465 VAL B 275 REMARK 465 PHE B 304 REMARK 465 LYS B 305 REMARK 465 THR B 306 REMARK 465 LEU B 307 REMARK 465 GLY B 308 REMARK 465 ALA B 309 REMARK 465 ARG B 404 REMARK 465 GLY B 405 REMARK 465 LYS B 406 REMARK 465 TRP B 434 REMARK 465 LEU B 435 REMARK 465 VAL B 436 REMARK 465 ALA B 437 REMARK 465 HIS B 438 REMARK 465 PHE B 439 REMARK 465 GLU B 472 REMARK 465 GLU B 473 REMARK 465 LEU B 474 REMARK 465 GLU B 475 REMARK 465 ALA B 476 REMARK 465 LEU B 477 REMARK 465 TRP B 478 REMARK 465 GLU B 479 REMARK 465 PRO B 480 REMARK 465 GLU B 481 REMARK 465 THR B 482 REMARK 465 LYS B 483 REMARK 465 LYS B 484 REMARK 465 THR B 485 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 46 68.24 -102.14 REMARK 500 LEU A 48 -157.20 -105.45 REMARK 500 LEU A 107 -81.66 -4.78 REMARK 500 ASN A 116 -104.86 17.52 REMARK 500 THR A 117 -157.35 52.26 REMARK 500 VAL A 120 -25.12 -156.75 REMARK 500 ALA A 157 -56.67 -25.24 REMARK 500 SER A 188 29.42 -164.40 REMARK 500 ASP A 197 -41.03 -135.64 REMARK 500 LYS A 232 61.38 -68.01 REMARK 500 THR A 247 -75.17 -45.25 REMARK 500 LEU A 316 -72.09 -42.86 REMARK 500 SER A 386 -82.20 -101.43 REMARK 500 SER A 396 -76.33 -75.93 REMARK 500 ASP A 430 -88.29 -87.11 REMARK 500 VAL B 35 -59.39 -28.81 REMARK 500 VAL B 43 -60.39 -92.38 REMARK 500 GLN B 46 68.66 -100.64 REMARK 500 LEU B 48 -156.34 -105.83 REMARK 500 LEU B 107 -82.02 -3.76 REMARK 500 ASN B 116 -105.19 17.89 REMARK 500 THR B 117 -156.86 52.18 REMARK 500 VAL B 120 -24.35 -156.49 REMARK 500 ALA B 157 -56.76 -25.23 REMARK 500 SER B 188 29.06 -163.99 REMARK 500 ASP B 197 -41.05 -135.82 REMARK 500 LYS B 232 61.72 -69.32 REMARK 500 SER B 386 -82.07 -100.94 REMARK 500 SER B 396 -76.18 -76.71 REMARK 500 ASP B 430 -88.39 -87.77 REMARK 500 LYS B 467 -28.96 81.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 255 OE1 REMARK 620 2 HIS A 258 NE2 97.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LU A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LU B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JA4 RELATED DB: PDB DBREF 4JA3 A 2 485 UNP P0AGF4 XYLE_ECOLI 2 485 DBREF 4JA3 B 2 485 UNP P0AGF4 XYLE_ECOLI 2 485 SEQADV 4JA3 GLY A 1 UNP P0AGF4 EXPRESSION TAG SEQADV 4JA3 GLY B 1 UNP P0AGF4 EXPRESSION TAG SEQRES 1 A 485 GLY ASN THR GLN TYR ASN SER SER TYR ILE PHE SER ILE SEQRES 2 A 485 THR LEU VAL ALA THR LEU GLY GLY LEU LEU PHE GLY TYR SEQRES 3 A 485 ASP THR ALA VAL ILE SER GLY THR VAL GLU SER LEU ASN SEQRES 4 A 485 THR VAL PHE VAL ALA PRO GLN ASN LEU SER GLU SER ALA SEQRES 5 A 485 ALA ASN SER LEU LEU GLY PHE CYS VAL ALA SER ALA LEU SEQRES 6 A 485 ILE GLY CYS ILE ILE GLY GLY ALA LEU GLY GLY TYR CYS SEQRES 7 A 485 SER ASN ARG PHE GLY ARG ARG ASP SER LEU LYS ILE ALA SEQRES 8 A 485 ALA VAL LEU PHE PHE ILE SER GLY VAL GLY SER ALA TRP SEQRES 9 A 485 PRO GLU LEU GLY PHE THR SER ILE ASN PRO ASP ASN THR SEQRES 10 A 485 VAL PRO VAL TYR LEU ALA GLY TYR VAL PRO GLU PHE VAL SEQRES 11 A 485 ILE TYR ARG ILE ILE GLY GLY ILE GLY VAL GLY LEU ALA SEQRES 12 A 485 SER MET LEU SER PRO MET TYR ILE ALA GLU LEU ALA PRO SEQRES 13 A 485 ALA HIS ILE ARG GLY LYS LEU VAL SER PHE ASN GLN PHE SEQRES 14 A 485 ALA ILE ILE PHE GLY GLN LEU LEU VAL TYR CYS VAL ASN SEQRES 15 A 485 TYR PHE ILE ALA ARG SER GLY ASP ALA SER TRP LEU ASN SEQRES 16 A 485 THR ASP GLY TRP ARG TYR MET PHE ALA SER GLU CYS ILE SEQRES 17 A 485 PRO ALA LEU LEU PHE LEU MET LEU LEU TYR THR VAL PRO SEQRES 18 A 485 GLU SER PRO ARG TRP LEU MET SER ARG GLY LYS GLN GLU SEQRES 19 A 485 GLN ALA GLU GLY ILE LEU ARG LYS ILE MET GLY ASN THR SEQRES 20 A 485 LEU ALA THR GLN ALA VAL GLN GLU ILE LYS HIS SER LEU SEQRES 21 A 485 ASP HIS GLY ARG LYS THR GLY GLY ARG LEU LEU MET PHE SEQRES 22 A 485 GLY VAL GLY VAL ILE VAL ILE GLY VAL MET LEU SER ILE SEQRES 23 A 485 PHE GLN GLN PHE VAL GLY ILE ASN VAL VAL LEU TYR TYR SEQRES 24 A 485 ALA PRO GLU VAL PHE LYS THR LEU GLY ALA SER THR ASP SEQRES 25 A 485 ILE ALA LEU LEU GLN THR ILE ILE VAL GLY VAL ILE ASN SEQRES 26 A 485 LEU THR PHE THR VAL LEU ALA ILE MET THR VAL ASP LYS SEQRES 27 A 485 PHE GLY ARG LYS PRO LEU GLN ILE ILE GLY ALA LEU GLY SEQRES 28 A 485 MET ALA ILE GLY MET PHE SER LEU GLY THR ALA PHE TYR SEQRES 29 A 485 THR GLN ALA PRO GLY ILE VAL ALA LEU LEU SER MET LEU SEQRES 30 A 485 PHE TYR VAL ALA ALA PHE ALA MET SER TRP GLY PRO VAL SEQRES 31 A 485 CYS TRP VAL LEU LEU SER GLU ILE PHE PRO ASN ALA ILE SEQRES 32 A 485 ARG GLY LYS ALA LEU ALA ILE ALA VAL ALA ALA GLN TRP SEQRES 33 A 485 LEU ALA ASN TYR PHE VAL SER TRP THR PHE PRO MET MET SEQRES 34 A 485 ASP LYS ASN SER TRP LEU VAL ALA HIS PHE HIS ASN GLY SEQRES 35 A 485 PHE SER TYR TRP ILE TYR GLY CYS MET GLY VAL LEU ALA SEQRES 36 A 485 ALA LEU PHE MET TRP LYS PHE VAL PRO GLU THR LYS GLY SEQRES 37 A 485 LYS THR LEU GLU GLU LEU GLU ALA LEU TRP GLU PRO GLU SEQRES 38 A 485 THR LYS LYS THR SEQRES 1 B 485 GLY ASN THR GLN TYR ASN SER SER TYR ILE PHE SER ILE SEQRES 2 B 485 THR LEU VAL ALA THR LEU GLY GLY LEU LEU PHE GLY TYR SEQRES 3 B 485 ASP THR ALA VAL ILE SER GLY THR VAL GLU SER LEU ASN SEQRES 4 B 485 THR VAL PHE VAL ALA PRO GLN ASN LEU SER GLU SER ALA SEQRES 5 B 485 ALA ASN SER LEU LEU GLY PHE CYS VAL ALA SER ALA LEU SEQRES 6 B 485 ILE GLY CYS ILE ILE GLY GLY ALA LEU GLY GLY TYR CYS SEQRES 7 B 485 SER ASN ARG PHE GLY ARG ARG ASP SER LEU LYS ILE ALA SEQRES 8 B 485 ALA VAL LEU PHE PHE ILE SER GLY VAL GLY SER ALA TRP SEQRES 9 B 485 PRO GLU LEU GLY PHE THR SER ILE ASN PRO ASP ASN THR SEQRES 10 B 485 VAL PRO VAL TYR LEU ALA GLY TYR VAL PRO GLU PHE VAL SEQRES 11 B 485 ILE TYR ARG ILE ILE GLY GLY ILE GLY VAL GLY LEU ALA SEQRES 12 B 485 SER MET LEU SER PRO MET TYR ILE ALA GLU LEU ALA PRO SEQRES 13 B 485 ALA HIS ILE ARG GLY LYS LEU VAL SER PHE ASN GLN PHE SEQRES 14 B 485 ALA ILE ILE PHE GLY GLN LEU LEU VAL TYR CYS VAL ASN SEQRES 15 B 485 TYR PHE ILE ALA ARG SER GLY ASP ALA SER TRP LEU ASN SEQRES 16 B 485 THR ASP GLY TRP ARG TYR MET PHE ALA SER GLU CYS ILE SEQRES 17 B 485 PRO ALA LEU LEU PHE LEU MET LEU LEU TYR THR VAL PRO SEQRES 18 B 485 GLU SER PRO ARG TRP LEU MET SER ARG GLY LYS GLN GLU SEQRES 19 B 485 GLN ALA GLU GLY ILE LEU ARG LYS ILE MET GLY ASN THR SEQRES 20 B 485 LEU ALA THR GLN ALA VAL GLN GLU ILE LYS HIS SER LEU SEQRES 21 B 485 ASP HIS GLY ARG LYS THR GLY GLY ARG LEU LEU MET PHE SEQRES 22 B 485 GLY VAL GLY VAL ILE VAL ILE GLY VAL MET LEU SER ILE SEQRES 23 B 485 PHE GLN GLN PHE VAL GLY ILE ASN VAL VAL LEU TYR TYR SEQRES 24 B 485 ALA PRO GLU VAL PHE LYS THR LEU GLY ALA SER THR ASP SEQRES 25 B 485 ILE ALA LEU LEU GLN THR ILE ILE VAL GLY VAL ILE ASN SEQRES 26 B 485 LEU THR PHE THR VAL LEU ALA ILE MET THR VAL ASP LYS SEQRES 27 B 485 PHE GLY ARG LYS PRO LEU GLN ILE ILE GLY ALA LEU GLY SEQRES 28 B 485 MET ALA ILE GLY MET PHE SER LEU GLY THR ALA PHE TYR SEQRES 29 B 485 THR GLN ALA PRO GLY ILE VAL ALA LEU LEU SER MET LEU SEQRES 30 B 485 PHE TYR VAL ALA ALA PHE ALA MET SER TRP GLY PRO VAL SEQRES 31 B 485 CYS TRP VAL LEU LEU SER GLU ILE PHE PRO ASN ALA ILE SEQRES 32 B 485 ARG GLY LYS ALA LEU ALA ILE ALA VAL ALA ALA GLN TRP SEQRES 33 B 485 LEU ALA ASN TYR PHE VAL SER TRP THR PHE PRO MET MET SEQRES 34 B 485 ASP LYS ASN SER TRP LEU VAL ALA HIS PHE HIS ASN GLY SEQRES 35 B 485 PHE SER TYR TRP ILE TYR GLY CYS MET GLY VAL LEU ALA SEQRES 36 B 485 ALA LEU PHE MET TRP LYS PHE VAL PRO GLU THR LYS GLY SEQRES 37 B 485 LYS THR LEU GLU GLU LEU GLU ALA LEU TRP GLU PRO GLU SEQRES 38 B 485 THR LYS LYS THR HET CD A 501 1 HET LU A 502 1 HET LU A 503 1 HET LU B 501 1 HET LU B 502 1 HETNAM CD CADMIUM ION HETNAM LU LUTETIUM (III) ION HETSYN LU LU FORMUL 3 CD CD 2+ FORMUL 4 LU 4(LU 3+) HELIX 1 1 SER A 8 VAL A 30 1 23 HELIX 2 2 ILE A 31 GLY A 33 5 3 HELIX 3 3 THR A 34 VAL A 43 1 10 HELIX 4 4 SER A 49 SER A 63 1 15 HELIX 5 5 SER A 63 PHE A 82 1 20 HELIX 6 6 GLY A 83 TRP A 104 1 22 HELIX 7 7 VAL A 120 GLY A 124 5 5 HELIX 8 8 TYR A 125 GLU A 153 1 29 HELIX 9 9 PRO A 156 HIS A 158 5 3 HELIX 10 10 ILE A 159 ARG A 187 1 29 HELIX 11 11 ASP A 197 SER A 205 1 9 HELIX 12 12 GLU A 206 LEU A 217 1 12 HELIX 13 13 TYR A 218 VAL A 220 5 3 HELIX 14 14 SER A 223 ARG A 230 1 8 HELIX 15 15 LYS A 232 ARG A 264 1 33 HELIX 16 16 VAL A 277 VAL A 291 1 15 HELIX 17 17 GLY A 292 ALA A 300 1 9 HELIX 18 18 THR A 311 PHE A 339 1 29 HELIX 19 19 ARG A 341 THR A 365 1 25 HELIX 20 20 PRO A 368 SER A 386 1 19 HELIX 21 21 SER A 386 GLU A 397 1 12 HELIX 22 22 LEU A 408 LYS A 431 1 24 HELIX 23 23 GLY A 442 VAL A 463 1 22 HELIX 24 24 SER B 8 VAL B 30 1 23 HELIX 25 25 ILE B 31 GLY B 33 5 3 HELIX 26 26 THR B 34 VAL B 43 1 10 HELIX 27 27 SER B 49 SER B 63 1 15 HELIX 28 28 SER B 63 LEU B 74 1 12 HELIX 29 29 LEU B 74 PHE B 82 1 9 HELIX 30 30 GLY B 83 TRP B 104 1 22 HELIX 31 31 VAL B 120 GLY B 124 5 5 HELIX 32 32 TYR B 125 GLU B 153 1 29 HELIX 33 33 PRO B 156 HIS B 158 5 3 HELIX 34 34 ILE B 159 ARG B 187 1 29 HELIX 35 35 ASP B 197 SER B 205 1 9 HELIX 36 36 GLU B 206 LEU B 217 1 12 HELIX 37 37 TYR B 218 VAL B 220 5 3 HELIX 38 38 SER B 223 ARG B 230 1 8 HELIX 39 39 LYS B 232 GLY B 245 1 14 HELIX 40 40 ASN B 246 GLN B 251 1 6 HELIX 41 41 VAL B 253 HIS B 258 1 6 HELIX 42 42 VAL B 277 VAL B 291 1 15 HELIX 43 43 GLY B 292 ALA B 300 1 9 HELIX 44 44 THR B 311 PHE B 339 1 29 HELIX 45 45 ARG B 341 PHE B 363 1 23 HELIX 46 46 PRO B 368 SER B 386 1 19 HELIX 47 47 SER B 386 ILE B 403 1 18 HELIX 48 48 LEU B 408 LYS B 431 1 24 HELIX 49 49 PHE B 443 VAL B 463 1 21 LINK OE2 GLU A 237 LU LU A 503 1555 1555 3.39 LINK OE1 GLU A 255 CD CD A 501 1555 1555 2.61 LINK NE2 HIS A 258 CD CD A 501 1555 1555 2.20 LINK OE2 GLU B 237 LU LU B 501 1555 1555 2.53 CISPEP 1 LYS A 431 ASN A 432 0 5.40 CISPEP 2 LYS B 431 ASN B 432 0 6.68 SITE 1 AC1 4 GLU A 255 HIS A 258 GLU B 255 HIS B 258 SITE 1 AC2 1 GLU A 237 SITE 1 AC3 1 GLU B 237 CRYST1 246.880 74.380 131.110 90.00 117.71 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004051 0.000000 0.002127 0.00000 SCALE2 0.000000 0.013444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008615 0.00000