PDB Short entry for 4JOQ HEADER TRANSPORT PROTEIN 18-MAR-13 4JOQ TITLE PUTATIVE RIBOSE ABC TRANSPORTER, PERIPLASMIC SOLUTE-BINDING PROTEIN TITLE 2 FROM RHODOBACTER SPHAEROIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC RIBOSE TRANSPORTER, PERIPLASMIC SOLUTE-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 349102; SOURCE 4 STRAIN: ATCC 17025; SOURCE 5 GENE: RBSB, RSPH17025_2685; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS STRUCTURAL GENOMICS, RIBOSE, ABC TRANSPORTER, SOLUTE-BINDING PROTEIN, KEYWDS 2 PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSPORT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,C.TESAR,M.ENDRES,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 15-NOV-17 4JOQ 1 REMARK REVDAT 1 10-APR-13 4JOQ 0 JRNL AUTH J.OSIPIUK,C.TESAR,M.ENDRES,A.JOACHIMIAK JRNL TITL PUTATIVE RIBOSE ABC TRANSPORTER, PERIPLASMIC SOLUTE-BINDING JRNL TITL 2 PROTEIN FROM RHODOBACTER SPHAEROIDES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 67964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3437 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 285 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4494 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.36000 REMARK 3 B22 (A**2) : 4.36000 REMARK 3 B33 (A**2) : -8.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.017 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.016 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.751 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4709 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4455 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6432 ; 1.660 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10275 ; 0.854 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 626 ; 6.368 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;38.636 ;25.409 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;13.901 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.649 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 723 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5507 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1042 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.569 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9750 -25.1620 -27.4880 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.0039 REMARK 3 T33: 0.0179 T12: -0.0004 REMARK 3 T13: -0.0299 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.3144 L22: 0.1432 REMARK 3 L33: 1.1805 L12: -0.0283 REMARK 3 L13: -0.3781 L23: 0.0743 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.0237 S13: 0.0020 REMARK 3 S21: -0.0251 S22: 0.0106 S23: -0.0040 REMARK 3 S31: 0.1754 S32: -0.0316 S33: -0.0311 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 319 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3769 0.0662 -8.2474 REMARK 3 T TENSOR REMARK 3 T11: 0.0214 T22: 0.0178 REMARK 3 T33: 0.0066 T12: -0.0127 REMARK 3 T13: 0.0091 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.2921 L22: 1.0260 REMARK 3 L33: 0.1536 L12: -0.3914 REMARK 3 L13: -0.0648 L23: 0.2516 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: -0.0102 S13: 0.0211 REMARK 3 S21: -0.0171 S22: -0.0149 S23: -0.0352 REMARK 3 S31: 0.0151 S32: -0.0113 S33: -0.0124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4JOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68031 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 42.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.96300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1 M TRIS REMARK 280 BUFFER, 20% PEG-3000, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.66200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.32400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 133.32400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.66200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 619 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 655 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 656 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 23 REMARK 465 ASN B 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 191 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 123 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP B 138 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 39 141.82 -172.24 REMARK 500 ASN A 90 53.32 34.42 REMARK 500 ASP A 122 -63.24 74.59 REMARK 500 ASP A 223 143.69 -176.68 REMARK 500 ALA A 249 -13.07 90.88 REMARK 500 TYR A 271 87.81 -156.72 REMARK 500 ALA B 39 142.65 -176.08 REMARK 500 ASP B 122 -73.49 71.82 REMARK 500 PRO B 167 109.71 -54.67 REMARK 500 ASP B 223 140.13 -172.92 REMARK 500 ALA B 249 -13.71 81.06 REMARK 500 TYR B 271 91.74 -160.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC110923 RELATED DB: TARGETTRACK DBREF 4JOQ A 25 319 UNP A4WW08 A4WW08_RHOS5 25 319 DBREF 4JOQ B 25 319 UNP A4WW08 A4WW08_RHOS5 25 319 SEQADV 4JOQ SER A 23 UNP A4WW08 EXPRESSION TAG SEQADV 4JOQ ASN A 24 UNP A4WW08 EXPRESSION TAG SEQADV 4JOQ HIS A 153 UNP A4WW08 ASN 153 ENGINEERED MUTATION SEQADV 4JOQ PRO A 214 UNP A4WW08 SER 214 ENGINEERED MUTATION SEQADV 4JOQ SER B 23 UNP A4WW08 EXPRESSION TAG SEQADV 4JOQ ASN B 24 UNP A4WW08 EXPRESSION TAG SEQADV 4JOQ HIS B 153 UNP A4WW08 ASN 153 ENGINEERED MUTATION SEQADV 4JOQ PRO B 214 UNP A4WW08 SER 214 ENGINEERED MUTATION SEQRES 1 A 297 SER ASN ALA GLN GLU LYS VAL GLY THR ILE GLY ILE ALA SEQRES 2 A 297 ILE PRO SER ALA THR HIS GLY PHE MSE GLY GLY LEU ASN SEQRES 3 A 297 PHE HIS ALA GLN ASP THR ILE LYS ARG LEU GLN GLU VAL SEQRES 4 A 297 TYR PRO GLN LEU ASP PHE VAL LEU ALA THR ALA GLY ASN SEQRES 5 A 297 ALA GLY LYS MSE VAL ASN ASP ILE GLU ASP MSE VAL ALA SEQRES 6 A 297 THR ARG ASN ILE SER ALA LEU VAL VAL LEU PRO PHE GLU SEQRES 7 A 297 SER GLU PRO LEU THR SER PRO VAL GLN ALA VAL LYS GLU SEQRES 8 A 297 ALA GLY ILE TRP VAL THR VAL VAL ASP ARG GLY LEU SER SEQRES 9 A 297 VAL GLU GLY ILE GLU ASP LEU TYR VAL ALA GLY ASP ASN SEQRES 10 A 297 PRO GLY PHE GLY ARG VAL ALA GLY GLU TYR PHE ALA GLN SEQRES 11 A 297 HIS LEU GLU SER GLY LYS LYS ILE VAL VAL LEU ARG GLY SEQRES 12 A 297 ILE PRO THR THR LEU ASP ASN GLU ARG VAL GLU ALA PHE SEQRES 13 A 297 THR ALA ALA ILE GLU GLY SER GLY ILE GLU VAL LEU ASP SEQRES 14 A 297 MSE GLN HIS GLY ASN TRP ASN ARG ASP ASP ALA PHE ASN SEQRES 15 A 297 VAL MSE GLN ASP PHE LEU SER LYS TYR PRO GLN ILE ASP SEQRES 16 A 297 ALA VAL TRP ALA ALA ASP ASP ASP MSE ALA ILE GLY ALA SEQRES 17 A 297 MSE GLU ALA ILE ALA GLN ALA GLY ARG THR GLU GLU MSE SEQRES 18 A 297 TRP VAL MSE GLY GLY ALA GLY MSE LYS GLU ILE ILE ARG SEQRES 19 A 297 ARG ILE ALA ASP GLY ASP PRO GLN LEU PRO ALA ASN VAL SEQRES 20 A 297 THR TYR PRO PRO ALA GLN ILE SER THR ALA ILE GLU LEU SEQRES 21 A 297 THR ALA LEU LYS LEU VAL SER SER THR PRO VAL SER GLY SEQRES 22 A 297 ARG PHE ILE ILE GLY SER GLN LEU VAL THR PRO GLU ASN SEQRES 23 A 297 ALA GLU GLN PHE TYR PHE PRO ASP SER PRO PHE SEQRES 1 B 297 SER ASN ALA GLN GLU LYS VAL GLY THR ILE GLY ILE ALA SEQRES 2 B 297 ILE PRO SER ALA THR HIS GLY PHE MSE GLY GLY LEU ASN SEQRES 3 B 297 PHE HIS ALA GLN ASP THR ILE LYS ARG LEU GLN GLU VAL SEQRES 4 B 297 TYR PRO GLN LEU ASP PHE VAL LEU ALA THR ALA GLY ASN SEQRES 5 B 297 ALA GLY LYS MSE VAL ASN ASP ILE GLU ASP MSE VAL ALA SEQRES 6 B 297 THR ARG ASN ILE SER ALA LEU VAL VAL LEU PRO PHE GLU SEQRES 7 B 297 SER GLU PRO LEU THR SER PRO VAL GLN ALA VAL LYS GLU SEQRES 8 B 297 ALA GLY ILE TRP VAL THR VAL VAL ASP ARG GLY LEU SER SEQRES 9 B 297 VAL GLU GLY ILE GLU ASP LEU TYR VAL ALA GLY ASP ASN SEQRES 10 B 297 PRO GLY PHE GLY ARG VAL ALA GLY GLU TYR PHE ALA GLN SEQRES 11 B 297 HIS LEU GLU SER GLY LYS LYS ILE VAL VAL LEU ARG GLY SEQRES 12 B 297 ILE PRO THR THR LEU ASP ASN GLU ARG VAL GLU ALA PHE SEQRES 13 B 297 THR ALA ALA ILE GLU GLY SER GLY ILE GLU VAL LEU ASP SEQRES 14 B 297 MSE GLN HIS GLY ASN TRP ASN ARG ASP ASP ALA PHE ASN SEQRES 15 B 297 VAL MSE GLN ASP PHE LEU SER LYS TYR PRO GLN ILE ASP SEQRES 16 B 297 ALA VAL TRP ALA ALA ASP ASP ASP MSE ALA ILE GLY ALA SEQRES 17 B 297 MSE GLU ALA ILE ALA GLN ALA GLY ARG THR GLU GLU MSE SEQRES 18 B 297 TRP VAL MSE GLY GLY ALA GLY MSE LYS GLU ILE ILE ARG SEQRES 19 B 297 ARG ILE ALA ASP GLY ASP PRO GLN LEU PRO ALA ASN VAL SEQRES 20 B 297 THR TYR PRO PRO ALA GLN ILE SER THR ALA ILE GLU LEU SEQRES 21 B 297 THR ALA LEU LYS LEU VAL SER SER THR PRO VAL SER GLY SEQRES 22 B 297 ARG PHE ILE ILE GLY SER GLN LEU VAL THR PRO GLU ASN SEQRES 23 B 297 ALA GLU GLN PHE TYR PHE PRO ASP SER PRO PHE MODRES 4JOQ MSE A 44 MET SELENOMETHIONINE MODRES 4JOQ MSE A 78 MET SELENOMETHIONINE MODRES 4JOQ MSE A 85 MET SELENOMETHIONINE MODRES 4JOQ MSE A 192 MET SELENOMETHIONINE MODRES 4JOQ MSE A 206 MET SELENOMETHIONINE MODRES 4JOQ MSE A 226 MET SELENOMETHIONINE MODRES 4JOQ MSE A 231 MET SELENOMETHIONINE MODRES 4JOQ MSE A 243 MET SELENOMETHIONINE MODRES 4JOQ MSE A 246 MET SELENOMETHIONINE MODRES 4JOQ MSE A 251 MET SELENOMETHIONINE MODRES 4JOQ MSE B 44 MET SELENOMETHIONINE MODRES 4JOQ MSE B 78 MET SELENOMETHIONINE MODRES 4JOQ MSE B 85 MET SELENOMETHIONINE MODRES 4JOQ MSE B 192 MET SELENOMETHIONINE MODRES 4JOQ MSE B 206 MET SELENOMETHIONINE MODRES 4JOQ MSE B 226 MET SELENOMETHIONINE MODRES 4JOQ MSE B 231 MET SELENOMETHIONINE MODRES 4JOQ MSE B 243 MET SELENOMETHIONINE MODRES 4JOQ MSE B 246 MET SELENOMETHIONINE MODRES 4JOQ MSE B 251 MET SELENOMETHIONINE HET MSE A 44 8 HET MSE A 78 8 HET MSE A 85 8 HET MSE A 192 8 HET MSE A 206 8 HET MSE A 226 8 HET MSE A 231 8 HET MSE A 243 8 HET MSE A 246 8 HET MSE A 251 8 HET MSE B 44 8 HET MSE B 78 8 HET MSE B 85 8 HET MSE B 192 8 HET MSE B 206 8 HET MSE B 226 8 HET MSE B 231 8 HET MSE B 243 8 HET MSE B 246 8 HET MSE B 251 8 HET ACT A 401 4 HET EDO B 401 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *306(H2 O) HELIX 1 1 HIS A 41 TYR A 62 1 22 HELIX 2 2 ASN A 74 ASN A 90 1 17 HELIX 3 3 LEU A 104 ALA A 114 1 11 HELIX 4 4 ASP A 138 LEU A 154 1 17 HELIX 5 5 THR A 168 ILE A 182 1 15 HELIX 6 6 ASN A 198 TYR A 213 1 16 HELIX 7 7 ASP A 223 ALA A 237 1 15 HELIX 8 8 ARG A 239 MSE A 243 5 5 HELIX 9 9 MSE A 251 ASP A 260 1 10 HELIX 10 10 ALA A 274 SER A 289 1 16 HELIX 11 11 ASN A 308 TYR A 313 5 6 HELIX 12 12 HIS B 41 TYR B 62 1 22 HELIX 13 13 ASN B 74 ASN B 90 1 17 HELIX 14 14 GLU B 100 ALA B 114 1 15 HELIX 15 15 ASP B 138 LEU B 154 1 17 HELIX 16 16 THR B 168 GLU B 183 1 16 HELIX 17 17 ASN B 198 TYR B 213 1 16 HELIX 18 18 ASP B 223 ALA B 237 1 15 HELIX 19 19 ARG B 239 MSE B 243 5 5 HELIX 20 20 MSE B 251 ASP B 260 1 10 HELIX 21 21 ALA B 274 SER B 289 1 16 HELIX 22 22 ASN B 308 TYR B 313 5 6 SHEET 1 A12 LEU A 65 ALA A 72 0 SHEET 2 A12 GLY A 30 PRO A 37 1 N ILE A 34 O ALA A 70 SHEET 3 A12 ALA A 93 VAL A 96 1 O ALA A 93 N GLY A 33 SHEET 4 A12 TRP A 117 VAL A 121 1 O TRP A 117 N LEU A 94 SHEET 5 A12 LEU A 133 GLY A 137 1 O LEU A 133 N VAL A 120 SHEET 6 A12 GLY A 295 ILE A 299 1 O PHE A 297 N TYR A 134 SHEET 7 A12 GLY B 295 ILE B 299 -1 O ARG B 296 N ILE A 298 SHEET 8 A12 LEU B 133 GLY B 137 1 N ALA B 136 O ILE B 299 SHEET 9 A12 TRP B 117 VAL B 121 1 N VAL B 120 O LEU B 133 SHEET 10 A12 ALA B 93 VAL B 96 1 N LEU B 94 O THR B 119 SHEET 11 A12 GLY B 30 PRO B 37 1 N GLY B 33 O VAL B 95 SHEET 12 A12 LEU B 65 ALA B 72 1 O ALA B 70 N ILE B 34 SHEET 1 B 4 GLU A 188 HIS A 194 0 SHEET 2 B 4 LYS A 159 ARG A 164 1 N ARG A 164 O GLN A 193 SHEET 3 B 4 ALA A 218 TRP A 220 1 O TRP A 220 N LEU A 163 SHEET 4 B 4 TRP A 244 MSE A 246 1 O MSE A 246 N VAL A 219 SHEET 1 C 2 ASN A 268 VAL A 269 0 SHEET 2 C 2 LEU A 303 VAL A 304 -1 O VAL A 304 N ASN A 268 SHEET 1 D 4 GLU B 188 HIS B 194 0 SHEET 2 D 4 LYS B 159 ARG B 164 1 N ARG B 164 O GLN B 193 SHEET 3 D 4 ALA B 218 TRP B 220 1 O TRP B 220 N LEU B 163 SHEET 4 D 4 TRP B 244 MSE B 246 1 O MSE B 246 N VAL B 219 SHEET 1 E 2 ASN B 268 VAL B 269 0 SHEET 2 E 2 LEU B 303 VAL B 304 -1 O VAL B 304 N ASN B 268 LINK C PHE A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N GLY A 45 1555 1555 1.34 LINK C LYS A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N VAL A 79 1555 1555 1.34 LINK C ASP A 84 N MSE A 85 1555 1555 1.34 LINK C MSE A 85 N VAL A 86 1555 1555 1.33 LINK C ASP A 191 N MSE A 192 1555 1555 1.32 LINK C MSE A 192 N GLN A 193 1555 1555 1.34 LINK C VAL A 205 N MSE A 206 1555 1555 1.32 LINK C MSE A 206 N GLN A 207 1555 1555 1.33 LINK C ASP A 225 N MSE A 226 1555 1555 1.34 LINK C MSE A 226 N ALA A 227 1555 1555 1.32 LINK C ALA A 230 N MSE A 231 1555 1555 1.33 LINK C MSE A 231 N GLU A 232 1555 1555 1.34 LINK C GLU A 242 N MSE A 243 1555 1555 1.33 LINK C MSE A 243 N TRP A 244 1555 1555 1.32 LINK C VAL A 245 N MSE A 246 1555 1555 1.32 LINK C MSE A 246 N GLY A 247 1555 1555 1.33 LINK C GLY A 250 N MSE A 251 1555 1555 1.34 LINK C MSE A 251 N LYS A 252 1555 1555 1.33 LINK C PHE B 43 N MSE B 44 1555 1555 1.33 LINK C MSE B 44 N GLY B 45 1555 1555 1.31 LINK C LYS B 77 N MSE B 78 1555 1555 1.33 LINK C MSE B 78 N VAL B 79 1555 1555 1.33 LINK C ASP B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N VAL B 86 1555 1555 1.33 LINK C ASP B 191 N MSE B 192 1555 1555 1.34 LINK C MSE B 192 N GLN B 193 1555 1555 1.32 LINK C VAL B 205 N MSE B 206 1555 1555 1.32 LINK C MSE B 206 N GLN B 207 1555 1555 1.35 LINK C ASP B 225 N MSE B 226 1555 1555 1.30 LINK C MSE B 226 N ALA B 227 1555 1555 1.33 LINK C ALA B 230 N MSE B 231 1555 1555 1.35 LINK C MSE B 231 N GLU B 232 1555 1555 1.33 LINK C GLU B 242 N MSE B 243 1555 1555 1.32 LINK C MSE B 243 N TRP B 244 1555 1555 1.32 LINK C VAL B 245 N MSE B 246 1555 1555 1.33 LINK C MSE B 246 N GLY B 247 1555 1555 1.33 LINK C GLY B 250 N MSE B 251 1555 1555 1.34 LINK C MSE B 251 N LYS B 252 1555 1555 1.32 SITE 1 AC1 3 ARG A 174 ASP A 223 TYR A 271 SITE 1 AC2 6 ARG A 164 MSE A 192 HOH A 610 ARG B 164 SITE 2 AC2 6 MSE B 192 HIS B 194 CRYST1 86.096 86.096 199.986 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011615 0.006706 0.000000 0.00000 SCALE2 0.000000 0.013412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005000 0.00000