PDB Short entry for 4JRX HEADER IMMUNE SYSTEM 22-MAR-13 4JRX TITLE CRYSTAL STRUCTURE OF CA5 TCR-HLA B*3505-LPEP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-300; COMPND 5 SYNONYM: HEAVY CHAIN HLA B*3508; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: BETA-2-MICROGLOBULIN FORM PI 5.3; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TRANS-ACTIVATOR PROTEIN BZLF1; COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: UNP RESIDUES 52-64; COMPND 16 SYNONYM: LPEP PEPTIDE, EB1, ZEBRA; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: CA5 TCR ALPHA CHAIN; COMPND 20 CHAIN: D; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: CA5 TCR BETA CHAIN; COMPND 24 CHAIN: E; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 24 ORGANISM_COMMON: EPSTEIN BARR VIRUS; SOURCE 25 ORGANISM_TAXID: 10376; SOURCE 26 OTHER_DETAILS: COMMERCIAL SOURCE; SOURCE 27 MOL_ID: 4; SOURCE 28 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 29 ORGANISM_COMMON: HUMAN; SOURCE 30 ORGANISM_TAXID: 9606; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 33 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 34 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 35 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 36 MOL_ID: 5; SOURCE 37 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 38 ORGANISM_COMMON: HUMAN; SOURCE 39 ORGANISM_TAXID: 9606; SOURCE 40 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 41 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 42 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 43 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 44 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TCR, T CELL, HLA B*3508, LPEP, EBV, ALLOREACTIVITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.LIU,J.ROSSJOHN,S.GRAS REVDAT 3 15-NOV-17 4JRX 1 REMARK REVDAT 2 07-MAY-14 4JRX 1 JRNL REVDAT 1 10-APR-13 4JRX 0 JRNL AUTH Y.C.LIU,J.J.MILES,M.A.NELLER,E.GOSTICK,D.A.PRICE, JRNL AUTH 2 A.W.PURCELL,J.MCCLUSKEY,S.R.BURROWS,J.ROSSJOHN,S.GRAS JRNL TITL HIGHLY DIVERGENT T-CELL RECEPTOR BINDING MODES UNDERLIE JRNL TITL 2 SPECIFIC RECOGNITION OF A BULGED VIRAL PEPTIDE BOUND TO A JRNL TITL 3 HUMAN LEUKOCYTE ANTIGEN CLASS I MOLECULE. JRNL REF J.BIOL.CHEM. V. 288 15442 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23569211 JRNL DOI 10.1074/JBC.M112.447185 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 39873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JRX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078427. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.956 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2AK4, 1ZHK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.2M KI, 0.1M NA REMARK 280 -CACODYLATE PH 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.20400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -118.21 54.20 REMARK 500 TYR A 84 -70.52 -73.85 REMARK 500 ASN A 86 94.23 -61.16 REMARK 500 GLN A 87 -161.07 -114.87 REMARK 500 TYR A 123 -65.94 -120.54 REMARK 500 ALA A 139 -27.47 93.62 REMARK 500 THR A 225 -62.87 -27.83 REMARK 500 ARG A 239 -10.17 90.59 REMARK 500 TRP B 60 -6.06 77.51 REMARK 500 LYS D 16 -0.55 79.89 REMARK 500 GLN D 64 94.83 -56.66 REMARK 500 ALA D 94 51.02 38.90 REMARK 500 SER D 95 131.10 -39.02 REMARK 500 MET D 186 -4.15 115.30 REMARK 500 ASP D 187 51.49 35.77 REMARK 500 ASN E 83 -179.89 62.44 REMARK 500 PHE E 113 73.66 58.28 REMARK 500 ASP E 162 26.92 -69.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY D 124 O REMARK 620 2 GLN D 6 O 112.9 REMARK 620 3 THR D 123 OG1 94.2 82.0 REMARK 620 4 GLN D 8 O 80.5 88.0 165.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 16 O REMARK 620 2 ARG A 14 O 71.6 REMARK 620 3 GLY A 18 O 98.5 106.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD E 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JRY RELATED DB: PDB DBREF 4JRX A 1 276 UNP C5MK56 C5MK56_HUMAN 25 300 DBREF 4JRX B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 4JRX C 1 13 UNP Q3KSS8 BZLF1_EBVG 52 64 DBREF 4JRX D 2 221 PDB 4JRX 4JRX 2 221 DBREF 4JRX E 3 253 PDB 4JRX 4JRX 3 253 SEQRES 1 A 276 GLY SER HIS SER MET ARG TYR PHE TYR THR ALA MET SER SEQRES 2 A 276 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 276 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA ALA SER PRO ARG THR GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG ASN THR GLN SEQRES 6 A 276 ILE PHE LYS THR ASN THR GLN THR TYR ARG GLU SER LEU SEQRES 7 A 276 ARG ASN LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 276 SER HIS ILE ILE GLN ARG MET TYR GLY CYS ASP LEU GLY SEQRES 9 A 276 PRO ASP GLY ARG LEU LEU ARG GLY HIS ASP GLN SER ALA SEQRES 10 A 276 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 A 276 GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN ARG SEQRES 13 A 276 ARG ALA TYR LEU GLU GLY LEU CYS VAL GLU TRP LEU ARG SEQRES 14 A 276 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG ALA SEQRES 15 A 276 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO VAL SER SEQRES 16 A 276 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 276 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 276 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 276 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 13 LEU PRO GLU PRO LEU PRO GLN GLY GLN LEU THR ALA TYR SEQRES 1 D 204 GLN LYS VAL THR GLN ALA GLN THR GLU ILE SER VAL VAL SEQRES 2 D 204 GLU LYS GLU ASP VAL THR LEU ASP CYS VAL TYR GLU THR SEQRES 3 D 204 ARG ASP THR THR TYR TYR LEU PHE TRP TYR LYS GLN PRO SEQRES 4 D 204 PRO SER GLY GLU LEU VAL PHE LEU ILE ARG ARG ASN SER SEQRES 5 D 204 PHE ASP GLU GLN ASN GLU ILE SER GLY ARG TYR SER TRP SEQRES 6 D 204 ASN PHE GLN LYS SER THR SER SER PHE ASN PHE THR ILE SEQRES 7 D 204 THR ALA SER GLN VAL VAL ASP SER ALA VAL TYR PHE CYS SEQRES 8 D 204 ALA LEU SER GLY PHE TYR ASN THR ASP LYS LEU ILE PHE SEQRES 9 D 204 GLY THR GLY THR ARG LEU GLN VAL PHE PRO ASN ILE GLN SEQRES 10 D 204 ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SEQRES 11 D 204 SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SEQRES 12 D 204 SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL SEQRES 13 D 204 TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET SEQRES 14 D 204 ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SEQRES 15 D 204 SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE SEQRES 16 D 204 ILE PRO GLN ASP THR PHE PHE PRO SER SEQRES 1 E 238 GLY VAL THR GLN THR PRO LYS PHE GLN VAL LEU LYS THR SEQRES 2 E 238 GLY GLN SER MET THR LEU GLN CYS ALA GLN ASP MET ASN SEQRES 3 E 238 HIS ASN SER MET TYR TRP TYR ARG GLN ASP PRO GLY MET SEQRES 4 E 238 GLY LEU ARG LEU ILE TYR TYR SER ALA SER GLU GLY THR SEQRES 5 E 238 THR ASP LYS GLY GLU VAL PRO ASN GLY TYR ASN VAL SER SEQRES 6 E 238 ARG LEU ASN LYS ARG GLU PHE SER LEU ARG LEU GLU SER SEQRES 7 E 238 ALA ALA PRO SER GLN THR SER VAL TYR PHE CYS ALA SER SEQRES 8 E 238 PRO GLY GLU THR GLU ALA PHE PHE GLY GLN GLY THR ARG SEQRES 9 E 238 LEU THR VAL THR GLU ASP LEU LYS ASN VAL PHE PRO PRO SEQRES 10 E 238 GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU ILE SER SEQRES 11 E 238 HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA THR GLY SEQRES 12 E 238 PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP VAL ASN SEQRES 13 E 238 GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP PRO GLN SEQRES 14 E 238 PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER ARG TYR SEQRES 15 E 238 ALA LEU SER SER ARG LEU ARG VAL SER ALA THR PHE TRP SEQRES 16 E 238 GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL GLN PHE SEQRES 17 E 238 TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN ASP ARG SEQRES 18 E 238 ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU ALA TRP SEQRES 19 E 238 GLY ARG ALA ASP HET NA A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD C 101 1 HET NA D 301 1 HET IOD D 302 1 HET IOD D 303 1 HET IOD D 304 1 HET NA E 301 1 HET IOD E 302 1 HETNAM NA SODIUM ION HETNAM IOD IODIDE ION FORMUL 6 NA 3(NA 1+) FORMUL 7 IOD 8(I 1-) FORMUL 17 HOH *132(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ALA A 139 ALA A 150 1 12 HELIX 4 4 ARG A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 GLN A 180 1 6 HELIX 7 7 THR A 225 THR A 228 5 4 HELIX 8 8 GLU A 253 GLN A 255 5 3 HELIX 9 9 GLN D 96 SER D 100 5 5 HELIX 10 10 ALA D 203 PHE D 208 1 6 HELIX 11 11 ALA E 95 THR E 99 5 5 HELIX 12 12 ASP E 125 VAL E 129 5 5 HELIX 13 13 SER E 140 GLN E 148 1 9 HELIX 14 14 ALA E 207 ASN E 212 1 6 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 A 8 SER A 4 MET A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 A 8 ILE A 94 LEU A 103 -1 O ARG A 97 N TYR A 9 SHEET 6 A 8 LEU A 109 TYR A 118 -1 O GLN A 115 N MET A 98 SHEET 7 A 8 LYS A 121 LEU A 126 -1 O LEU A 126 N ASP A 114 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 PRO A 193 0 SHEET 2 B 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 4 LYS A 186 PRO A 193 0 SHEET 2 C 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLU A 222 ASP A 223 0 SHEET 2 D 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 D 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 D 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 LYS B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 F 4 LYS B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 GLU B 44 ARG B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 G 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 G 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 H 2 LYS D 3 THR D 5 0 SHEET 2 H 2 VAL D 24 GLU D 26 -1 O GLU D 26 N LYS D 3 SHEET 1 I 5 GLU D 10 VAL D 14 0 SHEET 2 I 5 THR D 125 PHE D 130 1 O PHE D 130 N VAL D 13 SHEET 3 I 5 ALA D 101 SER D 108 -1 N ALA D 101 O LEU D 127 SHEET 4 I 5 TYR D 38 GLN D 44 -1 N GLN D 44 O VAL D 102 SHEET 5 I 5 VAL D 51 ASN D 57 -1 O VAL D 51 N LYS D 43 SHEET 1 J 4 GLU D 10 VAL D 14 0 SHEET 2 J 4 THR D 125 PHE D 130 1 O PHE D 130 N VAL D 13 SHEET 3 J 4 ALA D 101 SER D 108 -1 N ALA D 101 O LEU D 127 SHEET 4 J 4 ILE D 120 PHE D 121 -1 O ILE D 120 N LEU D 107 SHEET 1 K 4 VAL D 19 LEU D 21 0 SHEET 2 K 4 SER D 87 ILE D 92 -1 O PHE D 90 N LEU D 21 SHEET 3 K 4 TYR D 76 GLN D 81 -1 N SER D 77 O THR D 91 SHEET 4 K 4 ILE D 67 SER D 68 -1 N SER D 68 O TYR D 76 SHEET 1 L 4 ALA D 139 GLN D 142 0 SHEET 2 L 4 SER D 152 THR D 157 -1 O LEU D 155 N TYR D 141 SHEET 3 L 4 PHE D 188 SER D 197 -1 O ALA D 195 N CYS D 154 SHEET 4 L 4 VAL D 173 ILE D 175 -1 N TYR D 174 O TRP D 196 SHEET 1 M 4 ALA D 139 GLN D 142 0 SHEET 2 M 4 SER D 152 THR D 157 -1 O LEU D 155 N TYR D 141 SHEET 3 M 4 PHE D 188 SER D 197 -1 O ALA D 195 N CYS D 154 SHEET 4 M 4 CYS D 179 MET D 183 -1 N LEU D 181 O SER D 190 SHEET 1 N 4 VAL E 4 THR E 7 0 SHEET 2 N 4 MET E 19 GLN E 25 -1 O ALA E 24 N THR E 5 SHEET 3 N 4 GLU E 86 LEU E 91 -1 O LEU E 91 N MET E 19 SHEET 4 N 4 TYR E 76 LEU E 81 -1 N ASN E 77 O ARG E 90 SHEET 1 O 6 PHE E 10 LYS E 14 0 SHEET 2 O 6 THR E 118 THR E 123 1 O THR E 121 N LEU E 13 SHEET 3 O 6 SER E 100 ALA E 105 -1 N TYR E 102 O THR E 118 SHEET 4 O 6 MET E 39 ASP E 45 -1 N GLN E 44 O VAL E 101 SHEET 5 O 6 GLY E 49 SER E 56 -1 O ILE E 53 N TRP E 41 SHEET 6 O 6 ASP E 67 LYS E 68 -1 O ASP E 67 N TYR E 55 SHEET 1 P 4 GLU E 133 PHE E 137 0 SHEET 2 P 4 LYS E 149 PHE E 159 -1 O VAL E 153 N PHE E 137 SHEET 3 P 4 TYR E 197 SER E 206 -1 O TYR E 197 N PHE E 159 SHEET 4 P 4 VAL E 179 THR E 181 -1 N CYS E 180 O ARG E 202 SHEET 1 Q 4 GLU E 133 PHE E 137 0 SHEET 2 Q 4 LYS E 149 PHE E 159 -1 O VAL E 153 N PHE E 137 SHEET 3 Q 4 TYR E 197 SER E 206 -1 O TYR E 197 N PHE E 159 SHEET 4 Q 4 LEU E 186 LYS E 187 -1 N LEU E 186 O ALA E 198 SHEET 1 R 4 GLU E 174 VAL E 175 0 SHEET 2 R 4 VAL E 164 VAL E 170 -1 N TRP E 168 O VAL E 175 SHEET 3 R 4 HIS E 216 PHE E 223 -1 O GLN E 220 N SER E 167 SHEET 4 R 4 GLN E 242 TRP E 249 -1 O GLN E 242 N PHE E 223 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.19 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.44 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.38 SSBOND 4 CYS D 23 CYS D 105 1555 1555 2.47 SSBOND 5 CYS D 179 CYS E 180 1555 1555 2.53 SSBOND 6 CYS E 23 CYS E 104 1555 1555 2.25 SSBOND 7 CYS E 154 CYS E 219 1555 1555 2.09 LINK O GLY D 124 NA NA D 301 1555 1555 2.36 LINK O GLN D 6 NA NA D 301 1555 1555 2.51 LINK O GLY A 16 NA NA A 301 1555 1555 2.52 LINK O ARG A 14 NA NA A 301 1555 1555 2.54 LINK OG1 THR D 123 NA NA D 301 1555 1555 2.60 LINK O GLN D 8 NA NA D 301 1555 1555 2.64 LINK O GLY A 18 NA NA A 301 1555 1555 2.79 CISPEP 1 TYR A 209 PRO A 210 0 0.13 CISPEP 2 HIS B 31 PRO B 32 0 0.52 CISPEP 3 THR E 7 PRO E 8 0 -0.92 CISPEP 4 TYR E 160 PRO E 161 0 4.35 SITE 1 AC1 3 ARG A 14 GLY A 16 GLY A 18 SITE 1 AC2 2 TRP A 51 THR A 178 SITE 1 AC3 1 ARG A 62 SITE 1 AC4 1 THR C 11 SITE 1 AC5 4 GLN D 6 GLN D 8 THR D 123 GLY D 124 SITE 1 AC6 2 ILE D 120 GLU E 70 SITE 1 AC7 3 ILE D 133 ASP D 160 SER D 161 SITE 1 AC8 2 GLN E 234 ARG E 236 SITE 1 AC9 3 ASP E 162 VAL E 164 PRO E 185 CRYST1 55.100 78.408 105.339 90.00 93.06 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018149 0.000000 0.000970 0.00000 SCALE2 0.000000 0.012754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009507 0.00000