PDB Short entry for 4JU9 HEADER LYASE 24-MAR-13 4JU9 TITLE CRYSTAL STRUCTURE OF THE HIS70LEU MUTANT OF BENZOYLFORMATE TITLE 2 DECARBOXYLASE FROM PSEUDOMONAS PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BENZOYLFORMATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BFD, BFDC; COMPND 5 EC: 4.1.1.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: MDLC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS THIAMINE DIPHOSPHATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.MCLEISH,H.R.BRODKIN REVDAT 1 17-APR-13 4JU9 0 JRNL AUTH H.R.BRODKIN,F.H.ANDREWS,A.C.MILNE,G.A.PETSKO,D.RINGE, JRNL AUTH 2 M.J.MCLEISH JRNL TITL CRYSTAL STRUCTURE OF THE HIS70LEU MUTANT OF BENZOYLFORMATE JRNL TITL 2 DECARBOXYLASE FROM PSEUDOMONAS PUTIDA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 3 NUMBER OF REFLECTIONS : 166814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2688 - 2.7083 1.00 14646 178 0.1421 0.1414 REMARK 3 2 2.7083 - 2.1497 1.00 14354 174 0.1269 0.1287 REMARK 3 3 2.1497 - 1.8780 1.00 14277 173 0.1246 0.1440 REMARK 3 4 1.8780 - 1.7063 1.00 14216 173 0.1193 0.1403 REMARK 3 5 1.7063 - 1.5840 1.00 14216 172 0.1058 0.1112 REMARK 3 6 1.5840 - 1.4906 1.00 14162 172 0.0992 0.1254 REMARK 3 7 1.4906 - 1.4159 1.00 14173 172 0.0998 0.1278 REMARK 3 8 1.4159 - 1.3543 1.00 14128 172 0.1016 0.1175 REMARK 3 9 1.3543 - 1.3021 0.95 13417 163 0.1064 0.1201 REMARK 3 10 1.3021 - 1.2572 0.85 11957 143 0.1287 0.1580 REMARK 3 11 1.2572 - 1.2179 0.73 10396 127 0.1505 0.1766 REMARK 3 12 1.2179 - 1.1831 0.56 7912 96 0.1846 0.1988 REMARK 3 13 1.1831 - 1.1519 0.36 5134 62 0.2439 0.1981 REMARK 3 14 1.1519 - 1.1240 0.13 1827 22 0.3834 0.5288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.10 REMARK 3 SHRINKAGE RADIUS : 0.00 REMARK 3 K_SOL : 0.51 REMARK 3 B_SOL : 115.65 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.55670 REMARK 3 B22 (A**2) : 0.39590 REMARK 3 B33 (A**2) : 1.16090 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4167 REMARK 3 ANGLE : 1.195 5724 REMARK 3 CHIRALITY : 0.078 642 REMARK 3 PLANARITY : 0.007 758 REMARK 3 DIHEDRAL : 13.089 1544 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-13. REMARK 100 THE RCSB ID CODE IS RCSB078511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 166814 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.124 REMARK 200 RESOLUTION RANGE LOW (A) : 41.241 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 14.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1BFD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG400, 150 MM CALCIUM CHLORIDE, REMARK 280 100 MM TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.67700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.66400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.61500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.67700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.66400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.61500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.67700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.66400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.61500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.67700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.66400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.61500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -216.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 162.70800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 95.32800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 162.70800 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 274.46000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 95.32800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 274.46000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 602 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 703 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 738 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1155 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 937 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 526 REMARK 465 VAL A 527 REMARK 465 LYS A 528 REMARK 465 HIS A 529 REMARK 465 HIS A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1237 O HOH A 1382 1.89 REMARK 500 O HOH A 1256 O HOH A 1376 2.07 REMARK 500 O HOH A 979 O HOH A 1201 2.07 REMARK 500 OE1 GLU A 368 O HOH A 1348 2.07 REMARK 500 O HOH A 1256 O HOH A 1317 2.11 REMARK 500 O HOH A 1175 O HOH A 1342 2.12 REMARK 500 O HOH A 1059 O HOH A 1259 2.14 REMARK 500 O HOH A 1055 O HOH A 1148 2.16 REMARK 500 O HOH A 987 O HOH A 1234 2.17 REMARK 500 O HOH A 1183 O HOH A 1256 2.17 REMARK 500 OE1 GLU A 509 O HOH A 1349 2.18 REMARK 500 O HOH A 860 O HOH A 1268 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1238 O HOH A 1382 8457 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 -144.90 48.33 REMARK 500 ASN A 202 64.68 -152.08 REMARK 500 HIS A 281 -72.35 -137.05 REMARK 500 ASP A 284 66.47 -152.45 REMARK 500 GLU A 375 46.62 -140.23 REMARK 500 PRO A 447 45.30 -84.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 944 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH A1216 DISTANCE = 5.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TZD A 604 O13 REMARK 620 2 THR A 457 O 93.9 REMARK 620 3 TZD A 604 O21 82.6 85.8 REMARK 620 4 ASP A 428 OD1 86.4 107.9 163.0 REMARK 620 5 ASN A 455 OD1 174.7 85.9 102.6 88.6 REMARK 620 6 HOH A 732 O 95.5 168.1 88.3 79.9 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 416 O REMARK 620 2 HOH A1238 O 94.1 REMARK 620 3 HOH A 866 O 98.5 142.3 REMARK 620 4 HOH A 926 O 79.0 72.6 75.2 REMARK 620 5 HOH A1047 O 74.9 72.8 144.9 134.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 118 O REMARK 620 2 ARG A 120 O 93.4 REMARK 620 3 ASN A 117 O 76.2 91.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TZD A 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JU8 RELATED DB: PDB REMARK 900 THE HIS70PHE MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM REMARK 900 PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 4JUA RELATED DB: PDB REMARK 900 THE HIS70SER MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM REMARK 900 PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 4JUB RELATED DB: PDB REMARK 900 THE HIS70THR MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM REMARK 900 PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 4JUC RELATED DB: PDB REMARK 900 THE SER26MET MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM REMARK 900 PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 4JUD RELATED DB: PDB REMARK 900 THE SER26THR MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM REMARK 900 PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 4JUF RELATED DB: PDB REMARK 900 THE HIS281ALA MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM REMARK 900 PSEUDOMONAS PUTIDA DBREF 4JU9 A 1 528 UNP P20906 MDLC_PSEPU 1 528 SEQADV 4JU9 LEU A 70 UNP P20906 HIS 70 ENGINEERED MUTATION SEQADV 4JU9 HIS A 529 UNP P20906 EXPRESSION TAG SEQADV 4JU9 HIS A 530 UNP P20906 EXPRESSION TAG SEQADV 4JU9 HIS A 531 UNP P20906 EXPRESSION TAG SEQADV 4JU9 HIS A 532 UNP P20906 EXPRESSION TAG SEQADV 4JU9 HIS A 533 UNP P20906 EXPRESSION TAG SEQADV 4JU9 HIS A 534 UNP P20906 EXPRESSION TAG SEQRES 1 A 534 MET ALA SER VAL HIS GLY THR THR TYR GLU LEU LEU ARG SEQRES 2 A 534 ARG GLN GLY ILE ASP THR VAL PHE GLY ASN PRO GLY SER SEQRES 3 A 534 ASN GLU LEU PRO PHE LEU LYS ASP PHE PRO GLU ASP PHE SEQRES 4 A 534 ARG TYR ILE LEU ALA LEU GLN GLU ALA CYS VAL VAL GLY SEQRES 5 A 534 ILE ALA ASP GLY TYR ALA GLN ALA SER ARG LYS PRO ALA SEQRES 6 A 534 PHE ILE ASN LEU LEU SER ALA ALA GLY THR GLY ASN ALA SEQRES 7 A 534 MET GLY ALA LEU SER ASN ALA TRP ASN SER HIS SER PRO SEQRES 8 A 534 LEU ILE VAL THR ALA GLY GLN GLN THR ARG ALA MET ILE SEQRES 9 A 534 GLY VAL GLU ALA LEU LEU THR ASN VAL ASP ALA ALA ASN SEQRES 10 A 534 LEU PRO ARG PRO LEU VAL LYS TRP SER TYR GLU PRO ALA SEQRES 11 A 534 SER ALA ALA GLU VAL PRO HIS ALA MET SER ARG ALA ILE SEQRES 12 A 534 HIS MET ALA SER MET ALA PRO GLN GLY PRO VAL TYR LEU SEQRES 13 A 534 SER VAL PRO TYR ASP ASP TRP ASP LYS ASP ALA ASP PRO SEQRES 14 A 534 GLN SER HIS HIS LEU PHE ASP ARG HIS VAL SER SER SER SEQRES 15 A 534 VAL ARG LEU ASN ASP GLN ASP LEU ASP ILE LEU VAL LYS SEQRES 16 A 534 ALA LEU ASN SER ALA SER ASN PRO ALA ILE VAL LEU GLY SEQRES 17 A 534 PRO ASP VAL ASP ALA ALA ASN ALA ASN ALA ASP CYS VAL SEQRES 18 A 534 MET LEU ALA GLU ARG LEU LYS ALA PRO VAL TRP VAL ALA SEQRES 19 A 534 PRO SER ALA PRO ARG CYS PRO PHE PRO THR ARG HIS PRO SEQRES 20 A 534 CYS PHE ARG GLY LEU MET PRO ALA GLY ILE ALA ALA ILE SEQRES 21 A 534 SER GLN LEU LEU GLU GLY HIS ASP VAL VAL LEU VAL ILE SEQRES 22 A 534 GLY ALA PRO VAL PHE ARG TYR HIS GLN TYR ASP PRO GLY SEQRES 23 A 534 GLN TYR LEU LYS PRO GLY THR ARG LEU ILE SER VAL THR SEQRES 24 A 534 CYS ASP PRO LEU GLU ALA ALA ARG ALA PRO MET GLY ASP SEQRES 25 A 534 ALA ILE VAL ALA ASP ILE GLY ALA MET ALA SER ALA LEU SEQRES 26 A 534 ALA ASN LEU VAL GLU GLU SER SER ARG GLN LEU PRO THR SEQRES 27 A 534 ALA ALA PRO GLU PRO ALA LYS VAL ASP GLN ASP ALA GLY SEQRES 28 A 534 ARG LEU HIS PRO GLU THR VAL PHE ASP THR LEU ASN ASP SEQRES 29 A 534 MET ALA PRO GLU ASN ALA ILE TYR LEU ASN GLU SER THR SEQRES 30 A 534 SER THR THR ALA GLN MET TRP GLN ARG LEU ASN MET ARG SEQRES 31 A 534 ASN PRO GLY SER TYR TYR PHE CYS ALA ALA GLY GLY LEU SEQRES 32 A 534 GLY PHE ALA LEU PRO ALA ALA ILE GLY VAL GLN LEU ALA SEQRES 33 A 534 GLU PRO GLU ARG GLN VAL ILE ALA VAL ILE GLY ASP GLY SEQRES 34 A 534 SER ALA ASN TYR SER ILE SER ALA LEU TRP THR ALA ALA SEQRES 35 A 534 GLN TYR ASN ILE PRO THR ILE PHE VAL ILE MET ASN ASN SEQRES 36 A 534 GLY THR TYR GLY ALA LEU ARG TRP PHE ALA GLY VAL LEU SEQRES 37 A 534 GLU ALA GLU ASN VAL PRO GLY LEU ASP VAL PRO GLY ILE SEQRES 38 A 534 ASP PHE ARG ALA LEU ALA LYS GLY TYR GLY VAL GLN ALA SEQRES 39 A 534 LEU LYS ALA ASP ASN LEU GLU GLN LEU LYS GLY SER LEU SEQRES 40 A 534 GLN GLU ALA LEU SER ALA LYS GLY PRO VAL LEU ILE GLU SEQRES 41 A 534 VAL SER THR VAL SER PRO VAL LYS HIS HIS HIS HIS HIS SEQRES 42 A 534 HIS HET CA A 601 1 HET MG A 602 1 HET MG A 603 1 HET TZD A 604 27 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM TZD 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL- HETNAM 2 TZD 2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN HETNAM 3 TZD DIPHOSPHATE HETSYN TZD THIAMIN THIAZOLONE DIPHOSPHATE FORMUL 2 CA CA 2+ FORMUL 3 MG 2(MG 2+) FORMUL 5 TZD C12 H18 N4 O8 P2 S FORMUL 6 HOH *689(H2 O) HELIX 1 1 SER A 3 GLN A 15 1 13 HELIX 2 2 GLY A 25 ASN A 27 5 3 HELIX 3 3 GLU A 28 LYS A 33 1 6 HELIX 4 4 GLN A 46 ARG A 62 1 17 HELIX 5 5 SER A 71 ALA A 78 1 8 HELIX 6 6 ALA A 78 SER A 88 1 11 HELIX 7 7 THR A 100 GLY A 105 1 6 HELIX 8 8 ASP A 114 LEU A 118 5 5 HELIX 9 9 SER A 131 ALA A 133 5 3 HELIX 10 10 GLU A 134 MET A 148 1 15 HELIX 11 11 ASP A 161 TRP A 163 5 3 HELIX 12 12 ASP A 168 PHE A 175 5 8 HELIX 13 13 ASN A 186 ALA A 200 1 15 HELIX 14 14 GLY A 208 ALA A 214 1 7 HELIX 15 15 ALA A 216 LYS A 228 1 13 HELIX 16 16 GLY A 256 GLU A 265 1 10 HELIX 17 17 ASP A 301 ALA A 308 1 8 HELIX 18 18 ASP A 317 VAL A 329 1 13 HELIX 19 19 HIS A 354 ALA A 366 1 13 HELIX 20 20 THR A 379 LEU A 387 1 9 HELIX 21 21 PHE A 405 GLU A 417 1 13 HELIX 22 22 GLY A 429 TYR A 433 5 5 HELIX 23 23 SER A 434 SER A 436 5 3 HELIX 24 24 ALA A 437 ASN A 445 1 9 HELIX 25 25 TYR A 458 GLU A 469 1 12 HELIX 26 26 ASP A 482 GLY A 491 1 10 HELIX 27 27 ASN A 499 ALA A 513 1 15 SHEET 1 A 6 ARG A 40 LEU A 43 0 SHEET 2 A 6 THR A 19 GLY A 22 1 N VAL A 20 O ILE A 42 SHEET 3 A 6 ALA A 65 LEU A 70 1 O PHE A 66 N PHE A 21 SHEET 4 A 6 LEU A 92 GLN A 98 1 O ILE A 93 N ILE A 67 SHEET 5 A 6 VAL A 154 PRO A 159 1 O LEU A 156 N VAL A 94 SHEET 6 A 6 SER A 126 TYR A 127 1 N TYR A 127 O SER A 157 SHEET 1 B 6 PHE A 249 LEU A 252 0 SHEET 2 B 6 VAL A 231 VAL A 233 1 N VAL A 231 O ARG A 250 SHEET 3 B 6 ALA A 204 LEU A 207 1 N LEU A 207 O TRP A 232 SHEET 4 B 6 VAL A 269 ILE A 273 1 O ILE A 273 N VAL A 206 SHEET 5 B 6 ARG A 294 THR A 299 1 O VAL A 298 N VAL A 272 SHEET 6 B 6 ASP A 312 VAL A 315 1 O ILE A 314 N THR A 299 SHEET 1 C 6 TYR A 395 PHE A 397 0 SHEET 2 C 6 ILE A 371 GLU A 375 1 N ASN A 374 O TYR A 396 SHEET 3 C 6 VAL A 422 GLY A 427 1 O VAL A 425 N LEU A 373 SHEET 4 C 6 ILE A 449 ASN A 454 1 O VAL A 451 N ALA A 424 SHEET 5 C 6 VAL A 517 SER A 522 1 O VAL A 521 N ILE A 452 SHEET 6 C 6 GLN A 493 ALA A 497 1 N ALA A 497 O GLU A 520 LINK CA CA A 601 O13 TZD A 604 1555 1555 2.30 LINK O THR A 457 CA CA A 601 1555 1555 2.32 LINK CA CA A 601 O21 TZD A 604 1555 1555 2.35 LINK OD1 ASP A 428 CA CA A 601 1555 1555 2.35 LINK OD1 ASN A 455 CA CA A 601 1555 1555 2.36 LINK CA CA A 601 O HOH A 732 1555 1555 2.36 LINK O ALA A 416 MG MG A 603 1555 1555 2.37 LINK O LEU A 118 MG MG A 602 1555 1555 2.41 LINK MG MG A 603 O HOH A1238 1555 1555 2.47 LINK O ARG A 120 MG MG A 602 1555 1555 2.48 LINK MG MG A 603 O HOH A 866 1555 1555 2.50 LINK MG MG A 603 O HOH A 926 1555 1555 2.52 LINK MG MG A 603 O HOH A1047 1555 1555 2.59 LINK O ASN A 117 MG MG A 602 1555 1555 2.66 CISPEP 1 ARG A 120 PRO A 121 0 11.15 CISPEP 2 ALA A 149 PRO A 150 0 -8.33 CISPEP 3 VAL A 277 PHE A 278 0 -18.47 SITE 1 AC1 5 ASP A 428 ASN A 455 THR A 457 TZD A 604 SITE 2 AC1 5 HOH A 732 SITE 1 AC2 3 ASN A 117 LEU A 118 ARG A 120 SITE 1 AC3 7 ASP A 347 ALA A 416 HOH A 866 HOH A 879 SITE 2 AC3 7 HOH A 926 HOH A1047 HOH A1238 SITE 1 AC4 27 ASN A 23 PRO A 24 GLY A 25 GLU A 47 SITE 2 AC4 27 LEU A 70 ASN A 77 GLU A 375 THR A 377 SITE 3 AC4 27 SER A 378 GLY A 401 LEU A 403 GLY A 427 SITE 4 AC4 27 ASP A 428 GLY A 429 SER A 430 TYR A 433 SITE 5 AC4 27 ASN A 455 THR A 457 TYR A 458 GLY A 459 SITE 6 AC4 27 ALA A 460 LEU A 461 CA A 601 HOH A 734 SITE 7 AC4 27 HOH A1266 HOH A1338 HOH A1388 CRYST1 81.354 95.328 137.230 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012292 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007287 0.00000