PDB Short entry for 4JZU HEADER HYDROLASE/RNA 03-APR-13 4JZU TITLE CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS PYROPHOSPHOHYDROLASE BSRPPH TITLE 2 BOUND TO A NON-HYDROLYSABLE TRIPHOSPHORYLATED DINUCLEOTIDE RNA (PCP- TITLE 3 PGPG) - FIRST GUANOSINE RESIDUE IN GUANOSINE BINDING POCKET COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA PYROPHOSPHOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 8-OXO-DGTPASE, 7,8-DIHYDRO-8-OXOGUANINE-TRIPHOSPHATASE, DGTP COMPND 5 PYROPHOSPHOHYDROLASE; COMPND 6 EC: 3.6.1.55; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(*(GCP)P*G)-3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU30630, MUTTA, YTKD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES KEYWDS NUDIX HYDROLASE, RNA PYROPHOSPHOHYDROLASE, RPPH, CYTOSOL, HYDROLASE, KEYWDS 2 HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PITON,V.LARUE,Y.THILLIER,A.DORLEANS,O.PELLEGRINI,I.LI DE LA SIERRA- AUTHOR 2 GALLAY,J.J.VASSEUR,F.DEBART,C.TISNE,C.CONDON REVDAT 4 03-APR-24 4JZU 1 REMARK REVDAT 3 28-FEB-24 4JZU 1 REMARK LINK REVDAT 2 10-JUL-13 4JZU 1 JRNL REVDAT 1 08-MAY-13 4JZU 0 JRNL AUTH J.PITON,V.LARUE,Y.THILLIER,A.DORLEANS,O.PELLEGRINI, JRNL AUTH 2 I.LI DE LA SIERRA-GALLAY,J.J.VASSEUR,F.DEBART,C.TISNE, JRNL AUTH 3 C.CONDON JRNL TITL BACILLUS SUBTILIS RNA DEPROTECTION ENZYME RPPH RECOGNIZES JRNL TITL 2 GUANOSINE IN THE SECOND POSITION OF ITS SUBSTRATES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 8858 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23610407 JRNL DOI 10.1073/PNAS.1221510110 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 30581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1553 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2499 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2204 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2378 REMARK 3 BIN R VALUE (WORKING SET) : 0.2174 REMARK 3 BIN FREE R VALUE : 0.2788 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.84 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 121 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2550 REMARK 3 NUCLEIC ACID ATOMS : 36 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.62580 REMARK 3 B22 (A**2) : 2.03390 REMARK 3 B33 (A**2) : 0.59180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.231 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.121 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2670 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3592 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 963 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 69 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 364 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2670 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 310 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3210 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.52 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.31 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 12.0686 19.9812 10.2258 REMARK 3 T TENSOR REMARK 3 T11: -0.0752 T22: -0.0792 REMARK 3 T33: -0.0716 T12: -0.0128 REMARK 3 T13: -0.0037 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.8812 L22: 1.9200 REMARK 3 L33: 1.5762 L12: -0.3873 REMARK 3 L13: 0.4689 L23: -0.5322 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: -0.1649 S13: -0.1447 REMARK 3 S21: 0.0018 S22: 0.0684 S23: 0.1162 REMARK 3 S31: 0.0549 S32: -0.1599 S33: -0.1037 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -17.0172 15.7062 -6.3702 REMARK 3 T TENSOR REMARK 3 T11: -0.0342 T22: -0.0944 REMARK 3 T33: -0.0735 T12: -0.0157 REMARK 3 T13: -0.0009 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.4452 L22: 5.2468 REMARK 3 L33: 0.9812 L12: 1.4057 REMARK 3 L13: 0.2194 L23: 0.6134 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.0061 S13: -0.2687 REMARK 3 S21: 0.0800 S22: 0.1325 S23: -0.3108 REMARK 3 S31: 0.1437 S32: 0.0381 S33: -0.0857 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : DIAMOND (1 1 1) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: STRUCTURE OF BSRPPH E68A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5, 25% PEG 1000, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.68850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.64400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.68850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.64400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 158 REMARK 465 GLY B 90 REMARK 465 LYS B 91 REMARK 465 GLU B 92 REMARK 465 LYS B 93 REMARK 465 VAL B 94 REMARK 465 ILE B 157 REMARK 465 GLU B 158 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G C 2 C5' C4' O4' C3' O3' C2' O2' REMARK 470 G C 2 C1' N9 C8 N7 C5 C6 O6 REMARK 470 G C 2 N1 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GCP C 1 O3' G C 2 P 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G C 2 O3' - P - O5' ANGL. DEV. = 30.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 19 60.35 32.23 REMARK 500 PHE A 114 -120.61 86.59 REMARK 500 GLN B 19 61.06 34.95 REMARK 500 PHE B 114 -93.66 -111.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JZS RELATED DB: PDB REMARK 900 RELATED ID: 4JZT RELATED DB: PDB REMARK 900 RELATED ID: 4JZV RELATED DB: PDB DBREF 4JZU A 1 158 UNP O35013 YTKD_BACSU 1 158 DBREF 4JZU B 1 158 UNP O35013 YTKD_BACSU 1 158 DBREF 4JZU C 1 2 PDB 4JZU 4JZU 1 2 SEQRES 1 A 158 MET TYR GLU PHE LYS ASP TYR TYR GLN ASN THR VAL GLN SEQRES 2 A 158 LEU SER PHE ASP ASP GLN PRO PHE SER ASP SER PRO LYS SEQRES 3 A 158 HIS VAL TRP VAL ILE CYS ARG PHE GLY GLY LYS TRP LEU SEQRES 4 A 158 LEU THR GLU HIS GLU ASP ARG GLY TYR GLU PHE PRO GLY SEQRES 5 A 158 GLY LYS VAL GLU PRO MET GLU CYS ALA GLU GLU ALA ALA SEQRES 6 A 158 LEU ARG GLU VAL LYS GLU GLU THR GLY ALA ARG VAL LYS SEQRES 7 A 158 SER LEU LYS TYR LEU GLY GLN TYR LYS VAL LEU GLY LYS SEQRES 8 A 158 GLU LYS VAL ILE VAL LYS ASN ILE TYR PHE ALA ASP ILE SEQRES 9 A 158 GLU LYS LEU GLU LYS GLN ALA ASP TYR PHE GLU THR LYS SEQRES 10 A 158 GLY PRO VAL LEU PHE HIS GLU LEU PRO GLU ASN LEU SER SEQRES 11 A 158 ARG ASN LYS LYS PHE SER PHE ILE MET LYS ASP SER VAL SEQRES 12 A 158 LEU PRO ILE SER LEU LYS LYS LEU LYS GLU SER GLY TRP SEQRES 13 A 158 ILE GLU SEQRES 1 B 158 MET TYR GLU PHE LYS ASP TYR TYR GLN ASN THR VAL GLN SEQRES 2 B 158 LEU SER PHE ASP ASP GLN PRO PHE SER ASP SER PRO LYS SEQRES 3 B 158 HIS VAL TRP VAL ILE CYS ARG PHE GLY GLY LYS TRP LEU SEQRES 4 B 158 LEU THR GLU HIS GLU ASP ARG GLY TYR GLU PHE PRO GLY SEQRES 5 B 158 GLY LYS VAL GLU PRO MET GLU CYS ALA GLU GLU ALA ALA SEQRES 6 B 158 LEU ARG GLU VAL LYS GLU GLU THR GLY ALA ARG VAL LYS SEQRES 7 B 158 SER LEU LYS TYR LEU GLY GLN TYR LYS VAL LEU GLY LYS SEQRES 8 B 158 GLU LYS VAL ILE VAL LYS ASN ILE TYR PHE ALA ASP ILE SEQRES 9 B 158 GLU LYS LEU GLU LYS GLN ALA ASP TYR PHE GLU THR LYS SEQRES 10 B 158 GLY PRO VAL LEU PHE HIS GLU LEU PRO GLU ASN LEU SER SEQRES 11 B 158 ARG ASN LYS LYS PHE SER PHE ILE MET LYS ASP SER VAL SEQRES 12 B 158 LEU PRO ILE SER LEU LYS LYS LEU LYS GLU SER GLY TRP SEQRES 13 B 158 ILE GLU SEQRES 1 C 2 GCP G HET GCP C 1 32 HET EPE B 201 15 HETNAM GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 GCP C11 H18 N5 O13 P3 FORMUL 4 EPE C8 H18 N2 O4 S FORMUL 5 HOH *219(H2 O) HELIX 1 1 CYS A 60 GLY A 74 1 15 HELIX 2 2 ASN A 128 ASN A 132 5 5 HELIX 3 3 SER A 136 LYS A 140 5 5 HELIX 4 4 SER A 142 GLY A 155 1 14 HELIX 5 5 CYS B 60 GLY B 74 1 15 HELIX 6 6 ASN B 128 ASN B 132 5 5 HELIX 7 7 SER B 136 LYS B 140 5 5 HELIX 8 8 SER B 142 SER B 154 1 13 SHEET 1 A 7 TYR A 2 LYS A 5 0 SHEET 2 A 7 THR A 11 SER A 15 -1 O VAL A 12 N PHE A 4 SHEET 3 A 7 ALA A 75 LEU A 89 -1 O LEU A 89 N THR A 11 SHEET 4 A 7 VAL A 94 LEU A 107 -1 O ILE A 99 N LEU A 83 SHEET 5 A 7 HIS A 27 PHE A 34 1 N ARG A 33 O ILE A 104 SHEET 6 A 7 LYS A 37 HIS A 43 -1 O LYS A 37 N PHE A 34 SHEET 7 A 7 GLY A 52 LYS A 54 0 SHEET 1 B 4 GLY A 47 GLU A 49 0 SHEET 2 B 4 LYS A 37 HIS A 43 -1 N THR A 41 O GLU A 49 SHEET 3 B 4 HIS A 27 PHE A 34 -1 N PHE A 34 O LYS A 37 SHEET 4 B 4 THR A 116 PHE A 122 0 SHEET 1 C 7 TYR B 2 LYS B 5 0 SHEET 2 C 7 THR B 11 SER B 15 -1 O LEU B 14 N TYR B 2 SHEET 3 C 7 ALA B 75 LEU B 89 -1 O LEU B 89 N THR B 11 SHEET 4 C 7 VAL B 96 LEU B 107 -1 O ASP B 103 N LYS B 78 SHEET 5 C 7 HIS B 27 PHE B 34 1 N ILE B 31 O ALA B 102 SHEET 6 C 7 LYS B 37 HIS B 43 -1 O LYS B 37 N PHE B 34 SHEET 7 C 7 GLY B 52 LYS B 54 0 SHEET 1 D 4 GLY B 47 GLU B 49 0 SHEET 2 D 4 LYS B 37 HIS B 43 -1 N HIS B 43 O GLY B 47 SHEET 3 D 4 HIS B 27 PHE B 34 -1 N PHE B 34 O LYS B 37 SHEET 4 D 4 THR B 116 PHE B 122 0 LINK O3' GCP C 1 P G C 2 1555 1555 1.68 SITE 1 AC1 15 TYR A 48 VAL A 120 LEU A 121 PHE A 122 SITE 2 AC1 15 HIS A 123 GLU A 124 GLU B 42 TYR B 48 SITE 3 AC1 15 LEU B 121 PHE B 122 HIS B 123 HOH B 319 SITE 4 AC1 15 HOH B 321 HOH B 398 HOH B 404 CRYST1 59.377 137.288 34.736 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028789 0.00000