PDB Short entry for 4K06 HEADER TOXIN 03-APR-13 4K06 TITLE CRYSTAL STRUCTURE OF MTX-II FROM BOTHROPS BRAZILI VENOM COMPLEXED WITH TITLE 2 POLYETHYLENE GLYCOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: MTX-II; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS BRAZILI; SOURCE 3 ORGANISM_TAXID: 157546 KEYWDS PHOSPHOLIPASE A2, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR C.A.H.FERNANDES,E.J.COMPARETTI,R.J.BORGES,M.R.M.FONTES REVDAT 2 27-NOV-13 4K06 1 COMPND DBREF REMARK SOURCE REVDAT 1 13-NOV-13 4K06 0 JRNL AUTH C.A.H.FERNANDES,E.J.COMPARETTI,R.J.BORGES, JRNL AUTH 2 S.HUANCAHUIRE-VEGA,L.A.PONCE-SOTO,S.MARANGONI,A.M.SOARES, JRNL AUTH 3 M.R.M.FONTES JRNL TITL STRUCTURAL BASES FOR A COMPLETE MYOTOXIC MECHANISM: CRYSTAL JRNL TITL 2 STRUCTURES OF TWO NON-CATALYTIC PHOSPHOLIPASES A2-LIKE FROM JRNL TITL 3 BOTHROPS BRAZILI VENOM. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1834 2772 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 24145104 JRNL DOI 10.1016/J.BBAPAP.2013.10.009 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 13751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.0175 - 3.5507 0.91 2519 129 0.1771 0.2223 REMARK 3 2 3.5507 - 2.8212 0.96 2643 137 0.1917 0.2239 REMARK 3 3 2.8212 - 2.4655 0.97 2628 144 0.2029 0.2533 REMARK 3 4 2.4655 - 2.2404 0.98 2669 142 0.2005 0.2462 REMARK 3 5 2.2404 - 2.0801 0.96 2599 141 0.2167 0.2642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1959 REMARK 3 ANGLE : 0.861 2607 REMARK 3 CHIRALITY : 0.059 265 REMARK 3 PLANARITY : 0.004 328 REMARK 3 DIHEDRAL : 12.944 734 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:26) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6680 -3.8462 -14.1441 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.1651 REMARK 3 T33: 0.1495 T12: 0.0190 REMARK 3 T13: -0.0162 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.5656 L22: 0.0978 REMARK 3 L33: 1.1167 L12: -0.0718 REMARK 3 L13: -0.8503 L23: -0.0368 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: 0.1503 S13: -0.1679 REMARK 3 S21: -0.3329 S22: -0.0002 S23: -0.0425 REMARK 3 S31: 0.1540 S32: -0.1818 S33: -0.0017 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 27:53) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0144 6.7924 -7.6769 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.1933 REMARK 3 T33: 0.1585 T12: 0.0078 REMARK 3 T13: 0.0122 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.3843 L22: 0.7529 REMARK 3 L33: 0.2169 L12: 0.0014 REMARK 3 L13: 0.3713 L23: 0.2619 REMARK 3 S TENSOR REMARK 3 S11: -0.2616 S12: -0.2586 S13: -0.0173 REMARK 3 S21: 0.0073 S22: 0.2407 S23: -0.1261 REMARK 3 S31: -0.4460 S32: 0.0474 S33: -0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 57:61) REMARK 3 ORIGIN FOR THE GROUP (A): 22.749 1.298 -4.657 REMARK 3 T TENSOR REMARK 3 T11: 0.2561 T22: 0.3283 REMARK 3 T33: 0.3437 T12: 0.0557 REMARK 3 T13: 0.0625 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 0.2020 L22: 0.3428 REMARK 3 L33: 0.3497 L12: -0.1013 REMARK 3 L13: -0.0920 L23: -0.2485 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: -0.0007 S13: -0.2539 REMARK 3 S21: -0.5462 S22: -0.2095 S23: -0.8700 REMARK 3 S31: 0.2070 S32: 0.4157 S33: -0.0327 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 67:79) REMARK 3 ORIGIN FOR THE GROUP (A): 16.235 -10.305 -10.851 REMARK 3 T TENSOR REMARK 3 T11: 0.2246 T22: 0.2216 REMARK 3 T33: 0.2593 T12: 0.0012 REMARK 3 T13: -0.0423 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.1086 L22: 0.1149 REMARK 3 L33: 0.4090 L12: 0.0504 REMARK 3 L13: -0.0908 L23: 0.1401 REMARK 3 S TENSOR REMARK 3 S11: 0.1263 S12: -0.0918 S13: -0.7048 REMARK 3 S21: 0.1208 S22: -0.1958 S23: -0.1377 REMARK 3 S31: 0.2227 S32: 0.0321 S33: -0.0127 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 80:107) REMARK 3 ORIGIN FOR THE GROUP (A): 13.057 -8.695 -4.155 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1389 REMARK 3 T33: 0.1618 T12: 0.0240 REMARK 3 T13: -0.0048 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.4097 L22: 0.5175 REMARK 3 L33: 0.8583 L12: -0.0852 REMARK 3 L13: -0.5279 L23: -0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: -0.0535 S13: 0.0580 REMARK 3 S21: -0.0819 S22: -0.0359 S23: -0.1060 REMARK 3 S31: -0.0735 S32: -0.0636 S33: 0.0141 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 108:114) REMARK 3 ORIGIN FOR THE GROUP (A): -2.796 0.086 -6.467 REMARK 3 T TENSOR REMARK 3 T11: 0.3675 T22: 0.4229 REMARK 3 T33: 0.1859 T12: -0.0862 REMARK 3 T13: -0.0455 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.1629 L22: 2.4725 REMARK 3 L33: 0.2052 L12: 0.5333 REMARK 3 L13: -0.3641 L23: -0.5584 REMARK 3 S TENSOR REMARK 3 S11: -0.8636 S12: -0.3296 S13: 0.0407 REMARK 3 S21: -1.1860 S22: 0.5637 S23: 0.0487 REMARK 3 S31: -0.2944 S32: 0.5870 S33: -0.0427 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 115:121) REMARK 3 ORIGIN FOR THE GROUP (A): -1.644 8.586 -16.738 REMARK 3 T TENSOR REMARK 3 T11: 0.3944 T22: 0.2106 REMARK 3 T33: 0.3160 T12: 0.0365 REMARK 3 T13: -0.0188 T23: -0.0535 REMARK 3 L TENSOR REMARK 3 L11: 0.0795 L22: 0.0485 REMARK 3 L33: 0.0063 L12: -0.0871 REMARK 3 L13: 0.0278 L23: 0.0094 REMARK 3 S TENSOR REMARK 3 S11: 0.0959 S12: 0.1868 S13: 0.0270 REMARK 3 S21: 0.1843 S22: 0.1477 S23: -0.2393 REMARK 3 S31: -0.1181 S32: 0.4922 S33: 0.0004 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 1:13) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4041 14.4997 -27.6276 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1538 REMARK 3 T33: 0.2117 T12: -0.0421 REMARK 3 T13: 0.0408 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.4484 L22: 0.3002 REMARK 3 L33: 2.8012 L12: -0.2696 REMARK 3 L13: 0.7998 L23: -0.1523 REMARK 3 S TENSOR REMARK 3 S11: -0.1023 S12: -0.0836 S13: 0.1401 REMARK 3 S21: 0.1487 S22: -0.0292 S23: 0.2038 REMARK 3 S31: -0.0236 S32: -0.0542 S33: 0.0227 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 15:26) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7213 5.0039 -28.9111 REMARK 3 T TENSOR REMARK 3 T11: 0.2289 T22: 0.2254 REMARK 3 T33: 0.1571 T12: -0.0360 REMARK 3 T13: 0.0312 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.3378 L22: 0.9521 REMARK 3 L33: 0.1636 L12: 0.4180 REMARK 3 L13: 0.2040 L23: 0.2693 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: -0.1659 S13: -0.0955 REMARK 3 S21: 0.6689 S22: 0.0423 S23: 0.7262 REMARK 3 S31: 0.2873 S32: 0.0052 S33: -0.0065 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 27:31) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9652 -1.6225 -26.8034 REMARK 3 T TENSOR REMARK 3 T11: 0.3057 T22: 0.2543 REMARK 3 T33: 0.4291 T12: -0.0258 REMARK 3 T13: 0.0534 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.0169 L22: 0.0035 REMARK 3 L33: 0.0332 L12: 0.0042 REMARK 3 L13: 0.0299 L23: 0.0071 REMARK 3 S TENSOR REMARK 3 S11: -0.1079 S12: -0.4044 S13: -0.0943 REMARK 3 S21: 0.6836 S22: -0.1510 S23: -0.1844 REMARK 3 S31: 0.0464 S32: 0.0567 S33: 0.0004 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 32:38) REMARK 3 ORIGIN FOR THE GROUP (A): 15.507 -6.069 -31.738 REMARK 3 T TENSOR REMARK 3 T11: 0.2489 T22: 0.1995 REMARK 3 T33: 0.2719 T12: 0.0075 REMARK 3 T13: -0.0009 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 0.2413 L22: 0.2506 REMARK 3 L33: 2.0957 L12: 0.2201 REMARK 3 L13: -0.6667 L23: -0.6893 REMARK 3 S TENSOR REMARK 3 S11: 0.0901 S12: -0.1020 S13: -0.0079 REMARK 3 S21: 0.3641 S22: 0.1213 S23: -0.0630 REMARK 3 S31: 0.2238 S32: -0.2734 S33: 0.0461 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 39:53) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2602 1.8732 -33.2393 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.1785 REMARK 3 T33: 0.1941 T12: 0.0192 REMARK 3 T13: -0.0101 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.2569 L22: 0.1364 REMARK 3 L33: 0.1190 L12: -0.1694 REMARK 3 L13: 0.0014 L23: 0.0933 REMARK 3 S TENSOR REMARK 3 S11: -0.1248 S12: 0.4656 S13: -0.1641 REMARK 3 S21: -0.1693 S22: 0.0806 S23: -0.2394 REMARK 3 S31: -0.0675 S32: 0.1189 S33: -0.0004 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 57:61) REMARK 3 ORIGIN FOR THE GROUP (A): 30.775 6.678 -27.058 REMARK 3 T TENSOR REMARK 3 T11: 0.3695 T22: 0.2836 REMARK 3 T33: 0.2162 T12: -0.0015 REMARK 3 T13: -0.0939 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.4209 L22: 0.2995 REMARK 3 L33: 0.2471 L12: -0.2505 REMARK 3 L13: -0.2123 L23: -0.0590 REMARK 3 S TENSOR REMARK 3 S11: 0.0542 S12: -0.2538 S13: 0.5515 REMARK 3 S21: 0.7880 S22: -0.1173 S23: -0.4935 REMARK 3 S31: -0.1082 S32: 0.0134 S33: 0.0072 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 67:79) REMARK 3 ORIGIN FOR THE GROUP (A): 20.651 17.611 -26.737 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.1877 REMARK 3 T33: 0.3060 T12: -0.0199 REMARK 3 T13: -0.0403 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 0.0853 L22: 0.0108 REMARK 3 L33: 0.3218 L12: 0.0237 REMARK 3 L13: 0.1793 L23: 0.0202 REMARK 3 S TENSOR REMARK 3 S11: 0.1394 S12: 0.5512 S13: 0.4404 REMARK 3 S21: -0.0836 S22: -0.2286 S23: -0.1668 REMARK 3 S31: 0.2559 S32: 0.2136 S33: -0.0290 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 80:107) REMARK 3 ORIGIN FOR THE GROUP (A): 21.912 14.657 -32.606 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1132 REMARK 3 T33: 0.1544 T12: -0.0124 REMARK 3 T13: 0.0075 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.2951 L22: 0.4136 REMARK 3 L33: 0.9045 L12: 0.3427 REMARK 3 L13: 0.3548 L23: -0.2462 REMARK 3 S TENSOR REMARK 3 S11: -0.1432 S12: 0.2984 S13: -0.0716 REMARK 3 S21: 0.0056 S22: 0.0931 S23: -0.0511 REMARK 3 S31: -0.0939 S32: 0.0412 S33: -0.0278 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 108:114) REMARK 3 ORIGIN FOR THE GROUP (A): 5.838 4.726 -38.973 REMARK 3 T TENSOR REMARK 3 T11: 0.3910 T22: 0.2863 REMARK 3 T33: 0.2588 T12: -0.0928 REMARK 3 T13: 0.0832 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.2753 L22: 0.7713 REMARK 3 L33: 0.2684 L12: 0.1148 REMARK 3 L13: 0.2896 L23: 0.2325 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: -0.6505 S13: -0.1781 REMARK 3 S21: 0.4240 S22: 0.1269 S23: 0.4616 REMARK 3 S31: 0.0856 S32: -0.1485 S33: -0.0390 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN B AND RESID 115:121) REMARK 3 ORIGIN FOR THE GROUP (A): 3.124 -3.450 -30.104 REMARK 3 T TENSOR REMARK 3 T11: 0.2882 T22: 0.2583 REMARK 3 T33: 0.4829 T12: 0.0028 REMARK 3 T13: 0.0887 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.1852 L22: 1.4334 REMARK 3 L33: 1.5275 L12: -0.3605 REMARK 3 L13: 0.1052 L23: -0.4774 REMARK 3 S TENSOR REMARK 3 S11: -0.5649 S12: -0.0375 S13: -1.0544 REMARK 3 S21: 0.3921 S22: -0.0419 S23: -0.3992 REMARK 3 S31: 0.2957 S32: 0.3919 S33: -0.7272 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB078724. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.435 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 8000, 0.25M AMMONIUM REMARK 280 SULFATE, 0.1M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.70700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 ASN A 88 CG OD1 ND2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 VAL B 31 CG1 CG2 REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 394 O HOH B 407 1.83 REMARK 500 O HOH B 414 O HOH B 423 1.90 REMARK 500 OD2 ASP A 132 O HOH A 323 2.00 REMARK 500 O HOH B 416 O HOH B 430 2.00 REMARK 500 O HOH B 389 O HOH B 398 2.01 REMARK 500 O HOH A 389 O HOH A 417 2.02 REMARK 500 O HOH A 386 O HOH A 393 2.02 REMARK 500 O1 SO4 B 203 O HOH B 418 2.06 REMARK 500 O HOH B 384 O HOH B 395 2.07 REMARK 500 O HOH B 378 O HOH B 384 2.09 REMARK 500 O HOH A 355 O HOH A 391 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4 SO4 B 203 O HOH B 403 1455 1.85 REMARK 500 O HOH A 405 O HOH B 417 2544 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 4 CD GLU A 4 OE2 0.072 REMARK 500 GLU B 4 CD GLU B 4 OE2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 25 78.20 -163.59 REMARK 500 LEU A 33 -173.56 58.18 REMARK 500 ALA B 24 87.02 -163.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 B 201 REMARK 610 7PE B 204 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7PE B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IQ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTHROPSTOXIN-I COMPLEXED WITH REMARK 900 POLIETILENE GLICOL 4000 REMARK 900 RELATED ID: 3CYL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIRATOXIN I (A MYOTOXIC LYS49-PLA2) REMARK 900 COMPLEXED WITH ALPHA-TOCOPHEROL REMARK 900 RELATED ID: 2OK9 RELATED DB: PDB REMARK 900 PIRATOXIN I CHEMICALLY MODIFIED BY BPB REMARK 900 RELATED ID: 4K09 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. NON REMARK 999 -SEQUENTIAL RESIDUE NUMBERING IS USED IN THIS ENTRY. MANY NUMBERS REMARK 999 WERE SIMPLY SKIPPED IN THE NUMBERING AND HAVE NOTHING TO DO WITH REMARK 999 LACK OF ELECTRON DENSITY. DBREF 4K06 A 1 134 PDB 4K06 4K06 1 134 DBREF 4K06 B 1 133 PDB 4K06 4K06 1 133 SEQRES 1 A 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 A 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 A 121 ALA ASP PRO CYS SEQRES 1 B 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 B 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 B 121 ALA ASP PRO CYS HET PGE A 201 10 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET PE4 B 201 22 HET SO4 B 202 5 HET SO4 B 203 5 HET 7PE B 204 19 HETNAM PGE TRIETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM 7PE 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY) HETNAM 2 7PE ETHOXY)ETHANOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 HETSYN 7PE POLYETHYLENE GLYCOL FRAGMENT FORMUL 3 PGE C6 H14 O4 FORMUL 4 SO4 5(O4 S 2-) FORMUL 7 PE4 C16 H34 O8 FORMUL 10 7PE C14 H30 O7 FORMUL 11 HOH *251(H2 O) HELIX 1 1 SER A 1 GLY A 16 1 14 HELIX 2 2 ASN A 18 GLY A 24 1 7 HELIX 3 3 ASP A 40 LYS A 58 1 16 HELIX 4 4 ASN A 90 ASN A 110 1 21 HELIX 5 5 LEU A 111 TYR A 114 5 4 HELIX 6 6 ASN A 115 ARG A 119 5 5 HELIX 7 7 LEU A 122 CYS A 127 5 5 HELIX 8 8 LEU B 2 GLY B 15 1 13 HELIX 9 9 ASN B 17 GLY B 23 1 7 HELIX 10 10 ASP B 39 LEU B 58 1 17 HELIX 11 11 ASN B 88 ASN B 109 1 21 HELIX 12 12 LEU B 110 TYR B 113 5 4 HELIX 13 13 ASN B 114 ARG B 118 5 5 HELIX 14 14 LEU B 121 CYS B 126 5 5 SHEET 1 A 2 ALA A 25 TYR A 26 0 SHEET 2 A 2 CYS A 30 GLY A 31 -1 O CYS A 30 N TYR A 26 SHEET 1 B 2 TYR A 76 LYS A 79 0 SHEET 2 B 2 THR A 82 CYS A 85 -1 O VAL A 84 N SER A 77 SHEET 1 C 2 TYR B 75 TRP B 77 0 SHEET 2 C 2 ILE B 82 CYS B 84 -1 O VAL B 83 N SER B 76 SSBOND 1 CYS A 28 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 46 1555 1555 2.03 SSBOND 3 CYS A 45 CYS A 106 1555 1555 2.03 SSBOND 4 CYS A 51 CYS A 134 1555 1555 2.03 SSBOND 5 CYS A 52 CYS A 99 1555 1555 2.02 SSBOND 6 CYS A 67 CYS A 92 1555 1555 2.03 SSBOND 7 CYS A 85 CYS A 97 1555 1555 2.03 SSBOND 8 CYS B 27 CYS B 126 1555 1555 2.03 SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.03 SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.03 SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.03 SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.02 SSBOND 13 CYS B 61 CYS B 91 1555 1555 2.03 SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.03 SITE 1 AC1 5 LEU A 2 GLY A 6 PRO A 19 TYR A 23 SITE 2 AC1 5 GLY A 24 SITE 1 AC2 8 THR A 82 ILE A 105 ARG A 108 HOH A 307 SITE 2 AC2 8 HOH A 329 HOH A 355 LYS B 36 HOH B 397 SITE 1 AC3 6 GLY A 34 ARG A 35 LYS A 57 HOH A 366 SITE 2 AC3 6 HOH A 372 HOH A 396 SITE 1 AC4 2 LYS A 116 ARG A 119 SITE 1 AC5 6 LYS B 7 LEU B 10 GLN B 11 TYR B 75 SITE 2 AC5 6 TRP B 77 7PE B 204 SITE 1 AC6 5 GLY B 15 LYS B 16 ASN B 17 HOH B 399 SITE 2 AC6 5 HOH B 427 SITE 1 AC7 6 THR B 59 LYS B 115 ARG B 118 HOH B 380 SITE 2 AC7 6 HOH B 403 HOH B 418 SITE 1 AC8 12 PRO A 125 LEU B 2 GLY B 6 LEU B 10 SITE 2 AC8 12 PRO B 18 TYR B 22 PE4 B 201 HOH B 377 SITE 3 AC8 12 HOH B 413 HOH B 414 HOH B 422 HOH B 428 CRYST1 39.010 71.414 44.420 90.00 102.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025634 0.000000 0.005683 0.00000 SCALE2 0.000000 0.014003 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023059 0.00000