PDB Short entry for 4K33 HEADER TRANSFERASE 10-APR-13 4K33 TITLE CRYSTAL STRUCTURE OF FGF RECEPTOR 3 (FGFR3) KINASE DOMAIN HARBORING TITLE 2 THE K650E MUTATION, A GAIN-OF-FUNCTION MUTATION RESPONSIBLE FOR TITLE 3 THANATOPHORIC DYSPLASIA TYPE II AND SPERMATOCYTIC SEMINOMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN FGF RECEPTOR 3 KINASE DOMAIN; COMPND 5 SYNONYM: FGFR-3; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FGFR3, JTK4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS-S KEYWDS KINASE DOMAIN FOLD CONSISTING OF N- AND C-LOBES, RECEPTOR TYROSINE KEYWDS 2 KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.HUANG,H.CHEN,M.MOHAMMADI REVDAT 4 20-SEP-23 4K33 1 REMARK SEQADV LINK REVDAT 3 28-DEC-16 4K33 1 TITLE REVDAT 2 30-OCT-13 4K33 1 JRNL REVDAT 1 11-SEP-13 4K33 0 JRNL AUTH Z.HUANG,H.CHEN,S.BLAIS,T.A.NEUBERT,X.LI,M.MOHAMMADI JRNL TITL STRUCTURAL MIMICRY OF A-LOOP TYROSINE PHOSPHORYLATION BY A JRNL TITL 2 PATHOGENIC FGF RECEPTOR 3 MUTATION. JRNL REF STRUCTURE V. 21 1889 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23972473 JRNL DOI 10.1016/J.STR.2013.07.017 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 14345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7501 - 5.0406 0.95 1352 151 0.1782 0.1965 REMARK 3 2 5.0406 - 4.0015 1.00 1359 151 0.1534 0.2044 REMARK 3 3 4.0015 - 3.4959 1.00 1333 147 0.1595 0.2266 REMARK 3 4 3.4959 - 3.1763 1.00 1313 147 0.1879 0.2257 REMARK 3 5 3.1763 - 2.9487 1.00 1315 146 0.1818 0.2541 REMARK 3 6 2.9487 - 2.7749 1.00 1322 146 0.1957 0.2579 REMARK 3 7 2.7749 - 2.6359 1.00 1296 145 0.1896 0.2494 REMARK 3 8 2.6359 - 2.5212 0.99 1300 144 0.1990 0.2990 REMARK 3 9 2.5212 - 2.4241 0.98 1267 141 0.1926 0.2823 REMARK 3 10 2.4241 - 2.3405 0.81 1053 117 0.2045 0.2794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2407 REMARK 3 ANGLE : 1.182 3267 REMARK 3 CHIRALITY : 0.081 362 REMARK 3 PLANARITY : 0.006 413 REMARK 3 DIHEDRAL : 15.051 909 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 18.6536 0.2212 36.8110 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.2364 REMARK 3 T33: 0.1513 T12: -0.0082 REMARK 3 T13: 0.0017 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.3433 L22: 2.6873 REMARK 3 L33: 2.3776 L12: 0.2199 REMARK 3 L13: -0.0268 L23: 0.9862 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: -0.0069 S13: 0.0336 REMARK 3 S21: 0.0822 S22: -0.0336 S23: 0.1632 REMARK 3 S31: -0.0556 S32: -0.1946 S33: 0.0476 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL BENDER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14385 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2PVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH7.5, 19% PEG 4000, 4% REMARK 280 C4H10O2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.11300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.33300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.71350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.33300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.11300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.71350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 435 REMARK 465 GLY A 436 REMARK 465 SER A 437 REMARK 465 SER A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 SER A 445 REMARK 465 GLN A 446 REMARK 465 ASP A 447 REMARK 465 PRO A 448 REMARK 465 PRO A 449 REMARK 465 THR A 450 REMARK 465 LEU A 451 REMARK 465 ALA A 452 REMARK 465 ASN A 453 REMARK 465 VAL A 454 REMARK 465 SER A 455 REMARK 465 GLU A 456 REMARK 465 LEU A 457 REMARK 465 GLU A 458 REMARK 465 LYS A 583 REMARK 465 PRO A 584 REMARK 465 PRO A 585 REMARK 465 GLU A 586 REMARK 465 SER A 756 REMARK 465 THR A 757 REMARK 465 ASP A 758 REMARK 465 GLU A 759 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 627 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 938 O HOH A 963 2.07 REMARK 500 O HOH A 916 O HOH A 938 2.08 REMARK 500 O HOH A 921 O HOH A 1014 2.12 REMARK 500 O HOH A 958 O HOH A 1014 2.13 REMARK 500 O VAL A 751 OG1 THR A 755 2.19 REMARK 500 OD1 ASP A 521 O HOH A 953 2.19 REMARK 500 ND2 ASN A 718 O HOH A 1005 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 514 O HOH A 913 3655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 666 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 617 35.62 -146.60 REMARK 500 ASP A 635 82.81 58.49 REMARK 500 VAL A 754 73.35 -110.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 622 OD1 REMARK 620 2 ASP A 635 OD2 99.1 REMARK 620 3 ACP A 801 O2B 166.6 91.0 REMARK 620 4 ACP A 801 O2A 96.8 93.7 73.6 REMARK 620 5 HOH A 943 O 78.0 176.3 91.5 84.3 REMARK 620 6 HOH A 944 O 97.1 100.7 89.6 158.1 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACP A 801 O1B REMARK 620 2 ACP A 801 O2G 90.2 REMARK 620 3 HOH A 939 O 88.4 169.7 REMARK 620 4 HOH A 940 O 174.8 95.0 86.6 REMARK 620 5 HOH A 941 O 84.0 98.8 91.3 95.1 REMARK 620 6 HOH A 963 O 89.9 73.2 96.5 91.6 170.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PSQ RELATED DB: PDB REMARK 900 UNPHOSPHORYLATED UNACTIVATED WILD TYPE FGFR2 KINASE DOMAIN REMARK 900 RELATED ID: 2PVF RELATED DB: PDB REMARK 900 PHOSPHORYLATED ACTIVATED FGFR2 KINASE DOMAIN REMARK 900 RELATED ID: 4J97 RELATED DB: PDB REMARK 900 FGFR2 KINASE DOMAIN HARBORING THE PATHOGENIC K659E MUTATION DBREF 4K33 A 449 759 UNP P22607 FGFR3_HUMAN 449 759 SEQADV 4K33 MET A 435 UNP P22607 EXPRESSION TAG SEQADV 4K33 GLY A 436 UNP P22607 EXPRESSION TAG SEQADV 4K33 SER A 437 UNP P22607 EXPRESSION TAG SEQADV 4K33 SER A 438 UNP P22607 EXPRESSION TAG SEQADV 4K33 HIS A 439 UNP P22607 EXPRESSION TAG SEQADV 4K33 HIS A 440 UNP P22607 EXPRESSION TAG SEQADV 4K33 HIS A 441 UNP P22607 EXPRESSION TAG SEQADV 4K33 HIS A 442 UNP P22607 EXPRESSION TAG SEQADV 4K33 HIS A 443 UNP P22607 EXPRESSION TAG SEQADV 4K33 HIS A 444 UNP P22607 EXPRESSION TAG SEQADV 4K33 SER A 445 UNP P22607 EXPRESSION TAG SEQADV 4K33 GLN A 446 UNP P22607 EXPRESSION TAG SEQADV 4K33 ASP A 447 UNP P22607 EXPRESSION TAG SEQADV 4K33 PRO A 448 UNP P22607 EXPRESSION TAG SEQADV 4K33 ALA A 482 UNP P22607 CYS 482 ENGINEERED MUTATION SEQADV 4K33 SER A 582 UNP P22607 CYS 582 ENGINEERED MUTATION SEQADV 4K33 GLU A 650 UNP P22607 LYS 650 ENGINEERED MUTATION SEQRES 1 A 325 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 325 PRO PRO THR LEU ALA ASN VAL SER GLU LEU GLU LEU PRO SEQRES 3 A 325 ALA ASP PRO LYS TRP GLU LEU SER ARG ALA ARG LEU THR SEQRES 4 A 325 LEU GLY LYS PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL SEQRES 5 A 325 VAL MET ALA GLU ALA ILE GLY ILE ASP LYS ASP ARG ALA SEQRES 6 A 325 ALA LYS PRO VAL THR VAL ALA VAL LYS MET LEU LYS ASP SEQRES 7 A 325 ASP ALA THR ASP LYS ASP LEU SER ASP LEU VAL SER GLU SEQRES 8 A 325 MET GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN ILE SEQRES 9 A 325 ILE ASN LEU LEU GLY ALA CYS THR GLN GLY GLY PRO LEU SEQRES 10 A 325 TYR VAL LEU VAL GLU TYR ALA ALA LYS GLY ASN LEU ARG SEQRES 11 A 325 GLU PHE LEU ARG ALA ARG ARG PRO PRO GLY LEU ASP TYR SEQRES 12 A 325 SER PHE ASP THR SER LYS PRO PRO GLU GLU GLN LEU THR SEQRES 13 A 325 PHE LYS ASP LEU VAL SER CYS ALA TYR GLN VAL ALA ARG SEQRES 14 A 325 GLY MET GLU TYR LEU ALA SER GLN LYS CYS ILE HIS ARG SEQRES 15 A 325 ASP LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASP ASN SEQRES 16 A 325 VAL MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP VAL SEQRES 17 A 325 HIS ASN LEU ASP TYR TYR LYS GLU THR THR ASN GLY ARG SEQRES 18 A 325 LEU PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE ASP SEQRES 19 A 325 ARG VAL TYR THR HIS GLN SER ASP VAL TRP SER PHE GLY SEQRES 20 A 325 VAL LEU LEU TRP GLU ILE PHE THR LEU GLY GLY SER PRO SEQRES 21 A 325 TYR PRO GLY ILE PRO VAL GLU GLU LEU PHE LYS LEU LEU SEQRES 22 A 325 LYS GLU GLY HIS ARG MET ASP LYS PRO ALA ASN CYS THR SEQRES 23 A 325 HIS ASP LEU TYR MET ILE MET ARG GLU CYS TRP HIS ALA SEQRES 24 A 325 ALA PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL GLU SEQRES 25 A 325 ASP LEU ASP ARG VAL LEU THR VAL THR SER THR ASP GLU HET ACP A 801 31 HET MG A 802 1 HET MG A 803 1 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 ACP C11 H18 N5 O12 P3 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *124(H2 O) HELIX 1 1 SER A 468 ALA A 470 5 3 HELIX 2 2 THR A 515 GLY A 533 1 19 HELIX 3 3 ASN A 562 ALA A 569 1 8 HELIX 4 4 THR A 590 GLN A 611 1 22 HELIX 5 5 ALA A 619 ARG A 621 5 3 HELIX 6 6 PRO A 657 MET A 661 5 5 HELIX 7 7 ALA A 662 ARG A 669 1 8 HELIX 8 8 THR A 672 THR A 689 1 18 HELIX 9 9 PRO A 699 GLU A 709 1 11 HELIX 10 10 THR A 720 TRP A 731 1 12 HELIX 11 11 ALA A 734 ARG A 738 5 5 HELIX 12 12 THR A 740 VAL A 754 1 15 SHEET 1 A 5 LEU A 472 GLU A 480 0 SHEET 2 A 5 GLY A 484 ALA A 491 -1 O MET A 488 N LYS A 476 SHEET 3 A 5 VAL A 503 LEU A 510 -1 O VAL A 507 N VAL A 487 SHEET 4 A 5 TYR A 552 GLU A 556 -1 O VAL A 553 N LYS A 508 SHEET 5 A 5 LEU A 541 CYS A 545 -1 N LEU A 542 O LEU A 554 SHEET 1 B 2 CYS A 613 ILE A 614 0 SHEET 2 B 2 ARG A 640 ASP A 641 -1 O ARG A 640 N ILE A 614 SHEET 1 C 2 VAL A 623 VAL A 625 0 SHEET 2 C 2 MET A 631 ILE A 633 -1 O LYS A 632 N LEU A 624 SHEET 1 D 2 TYR A 648 LYS A 649 0 SHEET 2 D 2 VAL A 670 TYR A 671 -1 O TYR A 671 N TYR A 648 LINK OD1 ASN A 622 MG MG A 802 1555 1555 2.01 LINK OD2 ASP A 635 MG MG A 802 1555 1555 1.99 LINK O2B ACP A 801 MG MG A 802 1555 1555 1.95 LINK O2A ACP A 801 MG MG A 802 1555 1555 2.09 LINK O1B ACP A 801 MG MG A 803 1555 1555 1.91 LINK O2G ACP A 801 MG MG A 803 1555 1555 2.00 LINK MG MG A 802 O HOH A 943 1555 1555 2.15 LINK MG MG A 802 O HOH A 944 1555 1555 2.05 LINK MG MG A 803 O HOH A 939 1555 1555 2.12 LINK MG MG A 803 O HOH A 940 1555 1555 2.01 LINK MG MG A 803 O HOH A 941 1555 1555 2.02 LINK MG MG A 803 O HOH A 963 1555 1555 1.83 CISPEP 1 LYS A 501 PRO A 502 0 -15.37 SITE 1 AC1 30 LEU A 478 GLY A 479 GLY A 481 ALA A 482 SITE 2 AC1 30 PHE A 483 GLY A 484 VAL A 486 ALA A 506 SITE 3 AC1 30 LYS A 508 VAL A 555 GLU A 556 ALA A 558 SITE 4 AC1 30 ASN A 562 ARG A 621 ASN A 622 LEU A 624 SITE 5 AC1 30 ASP A 635 ARG A 655 MG A 802 MG A 803 SITE 6 AC1 30 HOH A 928 HOH A 933 HOH A 939 HOH A 940 SITE 7 AC1 30 HOH A 941 HOH A 942 HOH A 943 HOH A 944 SITE 8 AC1 30 HOH A 963 HOH A 966 SITE 1 AC2 5 ASN A 622 ASP A 635 ACP A 801 HOH A 943 SITE 2 AC2 5 HOH A 944 SITE 1 AC3 6 ARG A 655 ACP A 801 HOH A 939 HOH A 940 SITE 2 AC3 6 HOH A 941 HOH A 963 CRYST1 54.226 61.427 100.666 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018441 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009934 0.00000