PDB Short entry for 4K9L HEADER LYASE 20-APR-13 4K9L TITLE CRYSTAL STRUCTURE OF THE HIS281THR MUTANT OF BENZOYLFORMATE TITLE 2 DECARBOXYLASE FROM PSEUDOMONAS PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BENZOYLFORMATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BFD, BFDC; COMPND 5 EC: 4.1.1.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: MDLC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS THIAMINE DIPHOSPHATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.R.BRODKIN,M.J.MCLEISH REVDAT 1 08-MAY-13 4K9L 0 JRNL AUTH H.R.BRODKIN,F.H.ANDREWS,A.C.MILNE,G.A.PETSKO,D.RINGE, JRNL AUTH 2 M.J.MCLEISH JRNL TITL CRYSTAL STRUCTURE OF THE HIS281THR MUTANT OF BENZOYLFORMATE JRNL TITL 2 DECARBOXYLASE FROM PSEUDOMONAS PUTIDA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 59347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.370 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.1328 - 3.9692 1.00 4629 161 0.1588 0.1802 REMARK 3 2 3.9692 - 3.1522 1.00 4489 157 0.1358 0.1786 REMARK 3 3 3.1522 - 2.7542 0.99 4385 153 0.1361 0.1790 REMARK 3 4 2.7542 - 2.5026 0.98 4323 150 0.1312 0.1809 REMARK 3 5 2.5026 - 2.3234 0.97 4277 150 0.1242 0.1783 REMARK 3 6 2.3234 - 2.1865 0.97 4289 149 0.1209 0.1721 REMARK 3 7 2.1865 - 2.0770 0.96 4186 146 0.1229 0.1736 REMARK 3 8 2.0770 - 1.9866 0.94 4150 145 0.1246 0.1850 REMARK 3 9 1.9866 - 1.9102 0.93 4074 142 0.1188 0.1791 REMARK 3 10 1.9102 - 1.8443 0.90 3967 138 0.1237 0.1904 REMARK 3 11 1.8443 - 1.7866 0.89 3859 135 0.1347 0.2200 REMARK 3 12 1.7866 - 1.7356 0.86 3792 133 0.1647 0.2176 REMARK 3 13 1.7356 - 1.6899 0.83 3612 125 0.2175 0.3093 REMARK 3 14 1.6899 - 1.6487 0.75 3315 116 0.2501 0.3023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 64.08 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.43380 REMARK 3 B22 (A**2) : 1.05070 REMARK 3 B33 (A**2) : -2.48460 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4113 REMARK 3 ANGLE : 1.304 5618 REMARK 3 CHIRALITY : 0.182 631 REMARK 3 PLANARITY : 0.008 741 REMARK 3 DIHEDRAL : 14.018 1499 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB079063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59347 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.649 REMARK 200 RESOLUTION RANGE LOW (A) : 26.129 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.92700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1BFD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG400, 150 MM CALCIUM CHLORIDE, REMARK 280 100 MM TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.36050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.74300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.56800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.36050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.74300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.56800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.36050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.74300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.56800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.36050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.74300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.56800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.72100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 80.72100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 812 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 701 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 709 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 762 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1018 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1026 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 283 REMARK 465 ASP A 284 REMARK 465 PRO A 285 REMARK 465 HIS A 527 REMARK 465 HIS A 528 REMARK 465 HIS A 529 REMARK 465 HIS A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 262 CD NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1104 O HOH A 1105 1.76 REMARK 500 O HOH A 1114 O HOH A 1115 1.88 REMARK 500 O HOH A 1070 O HOH A 1117 1.90 REMARK 500 O HOH A 1024 O HOH A 1110 1.92 REMARK 500 OE1 GLU A 107 O HOH A 1010 1.98 REMARK 500 O HOH A 1081 O HOH A 1085 2.02 REMARK 500 O HOH A 997 O HOH A 1022 2.08 REMARK 500 O HOH A 872 O HOH A 973 2.09 REMARK 500 O HOH A 919 O HOH A 957 2.17 REMARK 500 O HOH A 798 O HOH A 1004 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 948 O HOH A 948 3655 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 -150.44 48.95 REMARK 500 LEU A 110 6.08 88.05 REMARK 500 GLU A 375 41.06 -145.98 REMARK 500 PRO A 447 47.55 -84.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 40 15.92 REMARK 500 TYR A 160 -12.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1087 DISTANCE = 8.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 455 OD1 REMARK 620 2 TZD A 601 O21 107.6 REMARK 620 3 THR A 457 O 86.2 88.3 REMARK 620 4 TZD A 601 O12 170.1 81.7 90.9 REMARK 620 5 HOH A 714 O 82.4 90.7 167.7 101.1 REMARK 620 6 ASP A 428 OD1 84.1 163.4 104.5 87.5 79.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TZD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 611 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K9K RELATED DB: PDB REMARK 900 THE HIS281TYR MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM REMARK 900 PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 4K9M RELATED DB: PDB REMARK 900 THE HIS281ASN MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM REMARK 900 PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 4K9N RELATED DB: PDB REMARK 900 THE ALA460ILE MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM REMARK 900 PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 4K9O RELATED DB: PDB REMARK 900 THE PHE397ALA MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM REMARK 900 PSEUDOMONAS PUTIDA REMARK 900 RELATED ID: 4K9P RELATED DB: PDB REMARK 900 THE HIS281TYR/ALA460ILE DOUBLE MUTANT OF BENZOYLFORMATE REMARK 900 DECARBOXYLASE FROM PSEUDOMONAS PUTIDA DBREF 4K9L A 2 526 UNP P20906 MDLC_PSEPU 2 526 SEQADV 4K9L THR A 281 UNP P20906 HIS 281 ENGINEERED MUTATION SEQADV 4K9L HIS A 527 UNP P20906 EXPRESSION TAG SEQADV 4K9L HIS A 528 UNP P20906 EXPRESSION TAG SEQADV 4K9L HIS A 529 UNP P20906 EXPRESSION TAG SEQADV 4K9L HIS A 530 UNP P20906 EXPRESSION TAG SEQADV 4K9L HIS A 531 UNP P20906 EXPRESSION TAG SEQADV 4K9L HIS A 532 UNP P20906 EXPRESSION TAG SEQRES 1 A 531 ALA SER VAL HIS GLY THR THR TYR GLU LEU LEU ARG ARG SEQRES 2 A 531 GLN GLY ILE ASP THR VAL PHE GLY ASN PRO GLY SER ASN SEQRES 3 A 531 GLU LEU PRO PHE LEU LYS ASP PHE PRO GLU ASP PHE ARG SEQRES 4 A 531 TYR ILE LEU ALA LEU GLN GLU ALA CYS VAL VAL GLY ILE SEQRES 5 A 531 ALA ASP GLY TYR ALA GLN ALA SER ARG LYS PRO ALA PHE SEQRES 6 A 531 ILE ASN LEU HIS SER ALA ALA GLY THR GLY ASN ALA MET SEQRES 7 A 531 GLY ALA LEU SER ASN ALA TRP ASN SER HIS SER PRO LEU SEQRES 8 A 531 ILE VAL THR ALA GLY GLN GLN THR ARG ALA MET ILE GLY SEQRES 9 A 531 VAL GLU ALA LEU LEU THR ASN VAL ASP ALA ALA ASN LEU SEQRES 10 A 531 PRO ARG PRO LEU VAL LYS TRP SER TYR GLU PRO ALA SER SEQRES 11 A 531 ALA ALA GLU VAL PRO HIS ALA MET SER ARG ALA ILE HIS SEQRES 12 A 531 MET ALA SER MET ALA PRO GLN GLY PRO VAL TYR LEU SER SEQRES 13 A 531 VAL PRO TYR ASP ASP TRP ASP LYS ASP ALA ASP PRO GLN SEQRES 14 A 531 SER HIS HIS LEU PHE ASP ARG HIS VAL SER SER SER VAL SEQRES 15 A 531 ARG LEU ASN ASP GLN ASP LEU ASP ILE LEU VAL LYS ALA SEQRES 16 A 531 LEU ASN SER ALA SER ASN PRO ALA ILE VAL LEU GLY PRO SEQRES 17 A 531 ASP VAL ASP ALA ALA ASN ALA ASN ALA ASP CYS VAL MET SEQRES 18 A 531 LEU ALA GLU ARG LEU LYS ALA PRO VAL TRP VAL ALA PRO SEQRES 19 A 531 SER ALA PRO ARG CYS PRO PHE PRO THR ARG HIS PRO CYS SEQRES 20 A 531 PHE ARG GLY LEU MET PRO ALA GLY ILE ALA ALA ILE SER SEQRES 21 A 531 GLN LEU LEU GLU GLY HIS ASP VAL VAL LEU VAL ILE GLY SEQRES 22 A 531 ALA PRO VAL PHE ARG TYR THR GLN TYR ASP PRO GLY GLN SEQRES 23 A 531 TYR LEU LYS PRO GLY THR ARG LEU ILE SER VAL THR CYS SEQRES 24 A 531 ASP PRO LEU GLU ALA ALA ARG ALA PRO MET GLY ASP ALA SEQRES 25 A 531 ILE VAL ALA ASP ILE GLY ALA MET ALA SER ALA LEU ALA SEQRES 26 A 531 ASN LEU VAL GLU GLU SER SER ARG GLN LEU PRO THR ALA SEQRES 27 A 531 ALA PRO GLU PRO ALA LYS VAL ASP GLN ASP ALA GLY ARG SEQRES 28 A 531 LEU HIS PRO GLU THR VAL PHE ASP THR LEU ASN ASP MET SEQRES 29 A 531 ALA PRO GLU ASN ALA ILE TYR LEU ASN GLU SER THR SER SEQRES 30 A 531 THR THR ALA GLN MET TRP GLN ARG LEU ASN MET ARG ASN SEQRES 31 A 531 PRO GLY SER TYR TYR PHE CYS ALA ALA GLY GLY LEU GLY SEQRES 32 A 531 PHE ALA LEU PRO ALA ALA ILE GLY VAL GLN LEU ALA GLU SEQRES 33 A 531 PRO GLU ARG GLN VAL ILE ALA VAL ILE GLY ASP GLY SER SEQRES 34 A 531 ALA ASN TYR SER ILE SER ALA LEU TRP THR ALA ALA GLN SEQRES 35 A 531 TYR ASN ILE PRO THR ILE PHE VAL ILE MET ASN ASN GLY SEQRES 36 A 531 THR TYR GLY ALA LEU ARG TRP PHE ALA GLY VAL LEU GLU SEQRES 37 A 531 ALA GLU ASN VAL PRO GLY LEU ASP VAL PRO GLY ILE ASP SEQRES 38 A 531 PHE ARG ALA LEU ALA LYS GLY TYR GLY VAL GLN ALA LEU SEQRES 39 A 531 LYS ALA ASP ASN LEU GLU GLN LEU LYS GLY SER LEU GLN SEQRES 40 A 531 GLU ALA LEU SER ALA LYS GLY PRO VAL LEU ILE GLU VAL SEQRES 41 A 531 SER THR VAL SER PRO HIS HIS HIS HIS HIS HIS HET TZD A 601 27 HET CA A 602 1 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET EDO A 611 4 HETNAM TZD 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL- HETNAM 2 TZD 2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN HETNAM 3 TZD DIPHOSPHATE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN TZD THIAMIN THIAZOLONE DIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 TZD C12 H18 N4 O8 P2 S FORMUL 3 CA CA 2+ FORMUL 4 EDO 9(C2 H6 O2) FORMUL 13 HOH *434(H2 O) HELIX 1 1 SER A 3 GLN A 15 1 13 HELIX 2 2 GLY A 25 ASN A 27 5 3 HELIX 3 3 GLU A 28 LYS A 33 1 6 HELIX 4 4 GLN A 46 ARG A 62 1 17 HELIX 5 5 SER A 71 ALA A 78 1 8 HELIX 6 6 ALA A 78 SER A 88 1 11 HELIX 7 7 THR A 100 GLY A 105 1 6 HELIX 8 8 ASP A 114 LEU A 118 5 5 HELIX 9 9 SER A 131 ALA A 133 5 3 HELIX 10 10 GLU A 134 MET A 148 1 15 HELIX 11 11 ASP A 161 TRP A 163 5 3 HELIX 12 12 ASP A 168 PHE A 175 5 8 HELIX 13 13 ASN A 186 SER A 199 1 14 HELIX 14 14 GLY A 208 ASN A 215 1 8 HELIX 15 15 ALA A 216 LYS A 228 1 13 HELIX 16 16 GLY A 256 GLU A 265 1 10 HELIX 17 17 ASP A 301 ALA A 308 1 8 HELIX 18 18 ASP A 317 VAL A 329 1 13 HELIX 19 19 HIS A 354 ALA A 366 1 13 HELIX 20 20 THR A 379 LEU A 387 1 9 HELIX 21 21 PHE A 405 GLU A 417 1 13 HELIX 22 22 GLY A 429 TYR A 433 5 5 HELIX 23 23 SER A 434 SER A 436 5 3 HELIX 24 24 ALA A 437 TYR A 444 1 8 HELIX 25 25 TYR A 458 LEU A 468 1 11 HELIX 26 26 ASP A 482 TYR A 490 1 9 HELIX 27 27 ASN A 499 LEU A 511 1 13 SHEET 1 A 6 ARG A 40 LEU A 43 0 SHEET 2 A 6 THR A 19 GLY A 22 1 N VAL A 20 O ILE A 42 SHEET 3 A 6 ALA A 65 HIS A 70 1 O PHE A 66 N PHE A 21 SHEET 4 A 6 LEU A 92 GLN A 98 1 O ILE A 93 N ALA A 65 SHEET 5 A 6 VAL A 154 PRO A 159 1 O LEU A 156 N VAL A 94 SHEET 6 A 6 TRP A 125 TYR A 127 1 N TYR A 127 O SER A 157 SHEET 1 B 6 PHE A 249 LEU A 252 0 SHEET 2 B 6 VAL A 231 VAL A 233 1 N VAL A 231 O ARG A 250 SHEET 3 B 6 ALA A 204 LEU A 207 1 N ILE A 205 O TRP A 232 SHEET 4 B 6 VAL A 269 ILE A 273 1 O ILE A 273 N VAL A 206 SHEET 5 B 6 ARG A 294 THR A 299 1 O ARG A 294 N VAL A 270 SHEET 6 B 6 ASP A 312 VAL A 315 1 O ILE A 314 N SER A 297 SHEET 1 C 6 TYR A 395 PHE A 397 0 SHEET 2 C 6 ILE A 371 GLU A 375 1 N ASN A 374 O TYR A 396 SHEET 3 C 6 VAL A 422 GLY A 427 1 O VAL A 425 N LEU A 373 SHEET 4 C 6 ILE A 449 ASN A 454 1 O VAL A 451 N ALA A 424 SHEET 5 C 6 VAL A 517 SER A 522 1 O VAL A 521 N ILE A 452 SHEET 6 C 6 GLN A 493 ALA A 497 1 N ALA A 497 O GLU A 520 LINK OD1 ASN A 455 CA CA A 602 1555 1555 2.22 LINK O21 TZD A 601 CA CA A 602 1555 1555 2.27 LINK O THR A 457 CA CA A 602 1555 1555 2.29 LINK O12 TZD A 601 CA CA A 602 1555 1555 2.33 LINK CA CA A 602 O HOH A 714 1555 1555 2.35 LINK OD1 ASP A 428 CA CA A 602 1555 1555 2.37 CISPEP 1 ARG A 120 PRO A 121 0 6.24 CISPEP 2 ALA A 149 PRO A 150 0 -7.25 CISPEP 3 VAL A 277 PHE A 278 0 -17.19 SITE 1 AC1 26 ASN A 23 PRO A 24 GLY A 25 GLU A 47 SITE 2 AC1 26 HIS A 70 ASN A 77 GLU A 375 THR A 377 SITE 3 AC1 26 SER A 378 GLY A 401 LEU A 403 GLY A 427 SITE 4 AC1 26 ASP A 428 GLY A 429 SER A 430 TYR A 433 SITE 5 AC1 26 ASN A 455 THR A 457 TYR A 458 GLY A 459 SITE 6 AC1 26 ALA A 460 LEU A 461 CA A 602 EDO A 606 SITE 7 AC1 26 HOH A 726 HOH A1134 SITE 1 AC2 5 ASP A 428 ASN A 455 THR A 457 TZD A 601 SITE 2 AC2 5 HOH A 714 SITE 1 AC3 9 TRP A 86 HIS A 89 GLU A 107 ASP A 301 SITE 2 AC3 9 GLU A 304 ARG A 307 HOH A 858 HOH A1007 SITE 3 AC3 9 HOH A1084 SITE 1 AC4 4 ALA A 149 CYS A 300 HOH A 850 HOH A 948 SITE 1 AC5 5 ASN A 215 ALA A 216 ASN A 217 ALA A 218 SITE 2 AC5 5 ASP A 219 SITE 1 AC6 7 ASN A 77 GLY A 80 ASN A 84 GLY A 402 SITE 2 AC6 7 LEU A 403 TZD A 601 HOH A 720 SITE 1 AC7 5 GLY A 256 ILE A 257 ALA A 258 ALA A 259 SITE 2 AC7 5 HOH A1091 SITE 1 AC8 8 PRO A 418 GLU A 419 ARG A 420 GLN A 421 SITE 2 AC8 8 HOH A 996 HOH A1001 HOH A1043 HOH A1132 SITE 1 AC9 3 LYS A 496 GLN A 502 SER A 506 SITE 1 BC1 5 ARG A 120 TRP A 125 SER A 126 ARG A 141 SITE 2 BC1 5 HOH A 854 SITE 1 BC2 2 ALA A 2 ASP A 166 CRYST1 80.721 95.486 137.136 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012388 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007292 0.00000