PDB Short entry for 4KPD HEADER TRANSFERASE 13-MAY-13 4KPD TITLE CRYSTAL STRUCTURE OF HUMAN FARNESYL PYROPHOSPHATE SYNTHASE (Y204F) TITLE 2 MUTANT COMPLEXED WITH MG, RISEDRONATE AND ISOPENTENYL PYROPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 DERIVATIVE KEYWDS ISOPRENE BIOSYNTHESIS, LIPID SYNTHESIS, STEROID BIOSYNTHESIS, KEYWDS 2 TRANSFERASE, DIMETHYLALLYL PYROPHOSPHATE, ISOPRENOID PATHWAY, KEYWDS 3 CHOLESTEROL SYNTHESIS, BISPHOSPHONATES EXPDTA X-RAY DIFFRACTION AUTHOR B.L.BARNETT,M.K.TSOUMPRA,J.R.C.MUNIZ,R.L.WALTER REVDAT 2 20-SEP-23 4KPD 1 REMARK SEQADV HETSYN LINK REVDAT 1 30-APR-14 4KPD 0 JRNL AUTH M.K.TSOUMPRA,J.R.C.MUNIZ,B.L.BARNETT,E.PILKA,A.KWAASI, JRNL AUTH 2 K.L.KAVANAGH,A.G.EVDOKIMOV,R.L.WALTER,F.H.EBETINO, JRNL AUTH 3 U.OPPERMANN,R.G.G.RUSSELL,J.E.DUNFORD JRNL TITL CRYSTAL STRUCTURE OF HUMAN FARNESYL PYROPHOSPHATE SYNTHASE JRNL TITL 2 (Y204F) MUTANT COMPLEXED WITH MG, RISEDRONATE AND JRNL TITL 3 ISOPENTENYL PYROPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 30728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1541 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2895 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2461 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2751 REMARK 3 BIN R VALUE (WORKING SET) : 0.2441 REMARK 3 BIN FREE R VALUE : 0.2847 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2719 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.60030 REMARK 3 B22 (A**2) : 3.60030 REMARK 3 B33 (A**2) : -7.20050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.347 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.151 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2890 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3932 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1379 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 80 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 416 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2890 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 4 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 365 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3656 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.67 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.96 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|9 - 28} REMARK 3 ORIGIN FOR THE GROUP (A): -0.5842 -29.9973 -25.8425 REMARK 3 T TENSOR REMARK 3 T11: -0.2271 T22: -0.1086 REMARK 3 T33: 0.2496 T12: -0.0694 REMARK 3 T13: -0.0804 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.0118 L22: 0.4071 REMARK 3 L33: 0.1202 L12: 0.9821 REMARK 3 L13: 1.6939 L23: 0.3625 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: -0.0384 S13: -0.1489 REMARK 3 S21: -0.3139 S22: -0.0644 S23: 0.1104 REMARK 3 S31: 0.1476 S32: -0.4112 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|29 - 53} REMARK 3 ORIGIN FOR THE GROUP (A): 15.7044 -26.0606 -32.1532 REMARK 3 T TENSOR REMARK 3 T11: -0.1266 T22: -0.1688 REMARK 3 T33: 0.2964 T12: -0.0007 REMARK 3 T13: 0.0418 T23: -0.1140 REMARK 3 L TENSOR REMARK 3 L11: 3.0491 L22: 0.1137 REMARK 3 L33: 4.0899 L12: 0.0846 REMARK 3 L13: 0.8861 L23: -0.5835 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.2650 S13: -0.2530 REMARK 3 S21: -0.3696 S22: -0.0137 S23: 0.0699 REMARK 3 S31: -0.1986 S32: -0.1510 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|54 - 78} REMARK 3 ORIGIN FOR THE GROUP (A): -6.4524 -25.6254 -16.9004 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.0077 REMARK 3 T33: 0.3040 T12: 0.0106 REMARK 3 T13: -0.0032 T23: 0.0809 REMARK 3 L TENSOR REMARK 3 L11: 5.5230 L22: 0.0028 REMARK 3 L33: 0.9823 L12: 0.7102 REMARK 3 L13: -0.3124 L23: 0.7564 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: -0.0603 S13: -0.1030 REMARK 3 S21: -0.1125 S22: 0.0161 S23: 0.0908 REMARK 3 S31: 0.1056 S32: -0.5072 S33: -0.0347 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|79 - 124} REMARK 3 ORIGIN FOR THE GROUP (A): 12.3385 -30.0925 -19.5724 REMARK 3 T TENSOR REMARK 3 T11: -0.2613 T22: -0.2513 REMARK 3 T33: 0.2659 T12: -0.0205 REMARK 3 T13: 0.0280 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 4.4724 L22: 1.0382 REMARK 3 L33: 1.4040 L12: 0.3339 REMARK 3 L13: 0.4759 L23: -0.2581 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: 0.1668 S13: -0.5305 REMARK 3 S21: -0.2221 S22: 0.0673 S23: -0.2088 REMARK 3 S31: 0.0897 S32: -0.2039 S33: -0.0139 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|125 - 152} REMARK 3 ORIGIN FOR THE GROUP (A): 10.4045 -17.8819 -23.0257 REMARK 3 T TENSOR REMARK 3 T11: -0.1588 T22: -0.1586 REMARK 3 T33: 0.2082 T12: 0.0184 REMARK 3 T13: 0.0106 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 3.3008 L22: 2.7528 REMARK 3 L33: 0.9523 L12: -0.6735 REMARK 3 L13: -0.0649 L23: 0.1451 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: 0.3341 S13: 0.0127 REMARK 3 S21: -0.2565 S22: 0.0306 S23: 0.0584 REMARK 3 S31: -0.1494 S32: -0.2692 S33: 0.0243 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|153 - 177} REMARK 3 ORIGIN FOR THE GROUP (A): 12.9785 -18.8552 -8.4386 REMARK 3 T TENSOR REMARK 3 T11: -0.1976 T22: -0.0869 REMARK 3 T33: 0.3040 T12: 0.0107 REMARK 3 T13: 0.0052 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.5125 L22: 1.1812 REMARK 3 L33: 1.0445 L12: -0.0915 REMARK 3 L13: -0.3417 L23: -1.1079 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: -0.3099 S13: 0.0190 REMARK 3 S21: 0.1340 S22: -0.0212 S23: 0.0615 REMARK 3 S31: -0.2015 S32: -0.0353 S33: -0.0111 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|178 - 268} REMARK 3 ORIGIN FOR THE GROUP (A): 10.0639 -30.3368 -2.6419 REMARK 3 T TENSOR REMARK 3 T11: -0.3021 T22: -0.0199 REMARK 3 T33: 0.2960 T12: -0.0051 REMARK 3 T13: 0.0401 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 2.5936 L22: 1.8438 REMARK 3 L33: 1.1096 L12: -0.4723 REMARK 3 L13: 0.5756 L23: -0.4864 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: -0.5442 S13: -0.5442 REMARK 3 S21: 0.1066 S22: 0.0489 S23: 0.1788 REMARK 3 S31: -0.0380 S32: -0.2545 S33: -0.1035 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|269 - 294} REMARK 3 ORIGIN FOR THE GROUP (A): 23.1926 -43.7528 8.0020 REMARK 3 T TENSOR REMARK 3 T11: -0.2592 T22: 0.0005 REMARK 3 T33: 0.2996 T12: 0.0097 REMARK 3 T13: -0.0724 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 1.6871 L22: 1.3822 REMARK 3 L33: 2.8603 L12: 0.3796 REMARK 3 L13: -1.5010 L23: -2.9104 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: -0.2554 S13: -0.1409 REMARK 3 S21: 0.2683 S22: 0.2848 S23: -0.0890 REMARK 3 S31: 0.2270 S32: -0.1304 S33: -0.2774 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|295 - 332} REMARK 3 ORIGIN FOR THE GROUP (A): 8.6598 -42.2352 4.3206 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.0156 REMARK 3 T33: 0.3040 T12: -0.1042 REMARK 3 T13: -0.0198 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 5.3275 L22: 0.5756 REMARK 3 L33: 1.6119 L12: -0.5738 REMARK 3 L13: -2.2168 L23: 0.7606 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.4505 S13: -0.4940 REMARK 3 S21: 0.2995 S22: -0.1879 S23: -0.2430 REMARK 3 S31: 0.3759 S32: -0.2558 S33: 0.1342 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|333 - 353} REMARK 3 ORIGIN FOR THE GROUP (A): -4.7609 -32.3498 -5.5168 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.0650 REMARK 3 T33: 0.3039 T12: -0.0247 REMARK 3 T13: 0.0002 T23: 0.1494 REMARK 3 L TENSOR REMARK 3 L11: 4.1804 L22: 1.5463 REMARK 3 L33: 1.3672 L12: 2.8895 REMARK 3 L13: -0.5711 L23: -1.0205 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.2840 S13: -0.1671 REMARK 3 S21: 0.0310 S22: -0.1351 S23: -0.0455 REMARK 3 S31: 0.1287 S32: -0.4598 S33: 0.1424 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30792 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 55.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.85900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NH4CL, 20% PEG 6000, 10% ETHELENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.49500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.86500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.86500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.74750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.86500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.86500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.24250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.86500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.86500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.74750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.86500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.86500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.24250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.49500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.49500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 634 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 661 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 HIS A 35 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 LEU A 315 CG CD1 CD2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 349 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 352 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 353 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 582 O HOH A 611 2.03 REMARK 500 O HOH A 585 O HOH A 616 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 124 -74.03 -104.38 REMARK 500 ALA A 178 58.47 -117.78 REMARK 500 THR A 201 -50.73 -129.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 92.3 REMARK 620 3 RIS A 405 O15 93.8 83.9 REMARK 620 4 RIS A 405 O12 92.8 166.2 83.1 REMARK 620 5 HOH A 582 O 150.8 98.7 114.1 82.8 REMARK 620 6 HOH A 583 O 77.3 110.1 163.5 83.5 73.5 REMARK 620 7 HOH A 611 O 158.0 79.1 65.3 91.6 51.2 124.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 94.4 REMARK 620 3 RIS A 405 O15 99.6 76.7 REMARK 620 4 HOH A 573 O 94.3 170.6 98.2 REMARK 620 5 HOH A 574 O 94.6 98.6 165.3 84.4 REMARK 620 6 HOH A 575 O 172.2 92.7 85.2 78.9 81.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 RIS A 405 O16 96.4 REMARK 620 3 RIS A 405 O11 94.7 86.2 REMARK 620 4 HOH A 577 O 86.4 88.0 174.2 REMARK 620 5 HOH A 578 O 163.0 85.7 102.3 76.7 REMARK 620 6 HOH A 579 O 93.4 166.7 83.9 101.7 87.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIS A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KFA RELATED DB: PDB REMARK 900 RELATED ID: 4KPJ RELATED DB: PDB REMARK 900 RELATED ID: 4KQ5 RELATED DB: PDB REMARK 900 RELATED ID: 4KQS RELATED DB: PDB REMARK 900 RELATED ID: 4KQU RELATED DB: PDB DBREF 4KPD A 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4KPD MET A -21 UNP P14324 EXPRESSION TAG SEQADV 4KPD GLY A -20 UNP P14324 EXPRESSION TAG SEQADV 4KPD SER A -19 UNP P14324 EXPRESSION TAG SEQADV 4KPD SER A -18 UNP P14324 EXPRESSION TAG SEQADV 4KPD HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 4KPD HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 4KPD HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 4KPD HIS A -14 UNP P14324 EXPRESSION TAG SEQADV 4KPD HIS A -13 UNP P14324 EXPRESSION TAG SEQADV 4KPD HIS A -12 UNP P14324 EXPRESSION TAG SEQADV 4KPD SER A -11 UNP P14324 EXPRESSION TAG SEQADV 4KPD SER A -10 UNP P14324 EXPRESSION TAG SEQADV 4KPD GLY A -9 UNP P14324 EXPRESSION TAG SEQADV 4KPD ARG A -8 UNP P14324 EXPRESSION TAG SEQADV 4KPD GLU A -7 UNP P14324 EXPRESSION TAG SEQADV 4KPD ASN A -6 UNP P14324 EXPRESSION TAG SEQADV 4KPD LEU A -5 UNP P14324 EXPRESSION TAG SEQADV 4KPD TYR A -4 UNP P14324 EXPRESSION TAG SEQADV 4KPD PHE A -3 UNP P14324 EXPRESSION TAG SEQADV 4KPD GLN A -2 UNP P14324 EXPRESSION TAG SEQADV 4KPD GLY A -1 UNP P14324 EXPRESSION TAG SEQADV 4KPD HIS A 0 UNP P14324 EXPRESSION TAG SEQADV 4KPD PHE A 204 UNP P14324 TYR 270 ENGINEERED MUTATION SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 A 375 LYS THR ALA PHE PHE SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 A 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET IPE A 404 14 HET RIS A 405 17 HETNAM MG MAGNESIUM ION HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM RIS 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID HETSYN IPE ISOPENTENYL PYROPHOSPHATE HETSYN RIS RISEDRONATE FORMUL 2 MG 3(MG 2+) FORMUL 5 IPE C5 H12 O7 P2 FORMUL 6 RIS C7 H11 N O7 P2 FORMUL 7 HOH *161(H2 O) HELIX 1 1 VAL A 9 HIS A 20 1 12 HELIX 2 2 HIS A 20 THR A 29 1 10 HELIX 3 3 HIS A 35 GLU A 37 5 3 HELIX 4 4 ILE A 38 ALA A 53 1 16 HELIX 5 5 TYR A 58 VAL A 72 1 15 HELIX 6 6 GLU A 73 GLN A 77 5 5 HELIX 7 7 ASP A 78 ASP A 107 1 30 HELIX 8 8 TRP A 118 LYS A 121 5 4 HELIX 9 9 VAL A 124 LEU A 126 5 3 HELIX 10 10 ASP A 127 ARG A 148 1 22 HELIX 11 11 TYR A 152 ALA A 178 1 27 HELIX 12 12 THR A 189 THR A 201 1 13 HELIX 13 13 THR A 201 PHE A 206 1 6 HELIX 14 14 PHE A 206 ALA A 217 1 12 HELIX 15 15 GLY A 221 GLY A 250 1 30 HELIX 16 16 ASP A 251 GLY A 256 1 6 HELIX 17 17 SER A 268 ALA A 278 1 11 HELIX 18 18 THR A 279 TYR A 290 1 12 HELIX 19 19 GLU A 294 LEU A 308 1 15 HELIX 20 20 ASP A 309 ALA A 333 1 25 HELIX 21 21 PRO A 338 TYR A 349 1 12 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD2 ASP A 103 MG MG A 401 1555 1555 2.09 LINK OD1 ASP A 103 MG MG A 403 1555 1555 1.95 LINK OD2 ASP A 107 MG MG A 401 1555 1555 2.03 LINK OD2 ASP A 107 MG MG A 403 1555 1555 2.15 LINK OD2 ASP A 243 MG MG A 402 1555 1555 2.15 LINK MG MG A 401 O15 RIS A 405 1555 1555 2.06 LINK MG MG A 401 O12 RIS A 405 1555 1555 2.07 LINK MG MG A 401 O HOH A 582 1555 1555 1.91 LINK MG MG A 401 O HOH A 583 1555 1555 2.15 LINK MG MG A 401 O HOH A 611 1555 1555 2.58 LINK MG MG A 402 O16 RIS A 405 1555 1555 1.95 LINK MG MG A 402 O11 RIS A 405 1555 1555 1.95 LINK MG MG A 402 O HOH A 577 1555 1555 2.07 LINK MG MG A 402 O HOH A 578 1555 1555 2.11 LINK MG MG A 402 O HOH A 579 1555 1555 2.24 LINK MG MG A 403 O15 RIS A 405 1555 1555 2.25 LINK MG MG A 403 O HOH A 573 1555 1555 2.08 LINK MG MG A 403 O HOH A 574 1555 1555 2.26 LINK MG MG A 403 O HOH A 575 1555 1555 2.09 CISPEP 1 ALA A 334 PRO A 335 0 5.71 SITE 1 AC1 7 ASP A 103 ASP A 107 MG A 403 RIS A 405 SITE 2 AC1 7 HOH A 582 HOH A 583 HOH A 611 SITE 1 AC2 6 ASP A 243 RIS A 405 HOH A 577 HOH A 578 SITE 2 AC2 6 HOH A 579 HOH A 632 SITE 1 AC3 7 ASP A 103 ASP A 107 MG A 401 RIS A 405 SITE 2 AC3 7 HOH A 573 HOH A 574 HOH A 575 SITE 1 AC4 20 GLY A 56 LYS A 57 ARG A 60 GLN A 96 SITE 2 AC4 20 ARG A 113 THR A 201 PHE A 204 SER A 205 SITE 3 AC4 20 PHE A 239 GLN A 240 ARG A 351 RIS A 405 SITE 4 AC4 20 HOH A 571 HOH A 584 HOH A 585 HOH A 586 SITE 5 AC4 20 HOH A 589 HOH A 605 HOH A 615 HOH A 616 SITE 1 AC5 23 ASP A 103 ASP A 107 ARG A 112 GLN A 171 SITE 2 AC5 23 LYS A 200 THR A 201 ASP A 243 LYS A 257 SITE 3 AC5 23 MG A 401 MG A 402 MG A 403 IPE A 404 SITE 4 AC5 23 HOH A 573 HOH A 575 HOH A 576 HOH A 577 SITE 5 AC5 23 HOH A 578 HOH A 579 HOH A 581 HOH A 582 SITE 6 AC5 23 HOH A 583 HOH A 611 HOH A 632 CRYST1 111.730 111.730 66.990 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014928 0.00000