PDB Short entry for 4KVL HEADER OXIDOREDUCTASE 22-MAY-13 4KVL TITLE CRYSTAL STRUCTURE OF ORYZA SATIVA FATTY ACID ALPHA-DIOXYGENASE Y379F TITLE 2 WITH PALMITIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID ALPHA-OXIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RED RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PIOX, COX-LIKE PROTEIN, FATTY ACID ALPHA-DIOXYGENASE, HEME BINDING, KEYWDS 2 CALCIUM BINDING, MONOTOPIC MEMBRANE PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZHU,M.KOSZELAK-ROSENBLUM,M.G.MALKOWSKI REVDAT 5 28-FEB-24 4KVL 1 HETSYN REVDAT 4 29-JUL-20 4KVL 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 16-OCT-13 4KVL 1 JRNL REVDAT 2 28-AUG-13 4KVL 1 JRNL REVDAT 1 21-AUG-13 4KVL 0 JRNL AUTH G.ZHU,M.KOSZELAK-ROSENBLUM,M.G.MALKOWSKI JRNL TITL CRYSTAL STRUCTURES OF ALPHA-DIOXYGENASE FROM ORYZA SATIVA: JRNL TITL 2 INSIGHTS INTO SUBSTRATE BINDING AND ACTIVATION BY HYDROGEN JRNL TITL 3 PEROXIDE. JRNL REF PROTEIN SCI. V. 22 1432 2013 JRNL REFN ISSN 0961-8368 JRNL PMID 23934749 JRNL DOI 10.1002/PRO.2327 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 107.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 61133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3256 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4367 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 216 REMARK 3 SOLVENT ATOMS : 505 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 1.07000 REMARK 3 B33 (A**2) : -2.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.339 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5314 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7164 ; 1.223 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 630 ; 5.647 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;33.905 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 907 ;13.500 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;16.998 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 753 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3963 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3070 ; 1.308 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4963 ; 2.241 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2244 ; 3.704 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2189 ; 5.679 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 618 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8043 42.0219 67.8921 REMARK 3 T TENSOR REMARK 3 T11: 0.0605 T22: 0.0605 REMARK 3 T33: 0.0428 T12: -0.0164 REMARK 3 T13: -0.0020 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 0.5372 L22: 0.5697 REMARK 3 L33: 0.6894 L12: 0.0925 REMARK 3 L13: 0.1658 L23: 0.3102 REMARK 3 S TENSOR REMARK 3 S11: 0.0918 S12: 0.0143 S13: -0.0225 REMARK 3 S21: 0.0578 S22: -0.1109 S23: -0.0114 REMARK 3 S31: 0.1013 S32: -0.0633 S33: 0.0190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 107.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% PEG 400, 0.2M LITHIUM CHLORIDE, REMARK 280 0.1M SODIUM CITRATE, PH 6.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.44350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.10100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.08650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.44350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.10100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.08650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.44350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.10100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.08650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.44350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.10100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.08650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1036 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 834 O HOH A 1200 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 73 41.86 70.22 REMARK 500 LEU A 83 35.57 -98.44 REMARK 500 TYR A 91 39.57 73.67 REMARK 500 ASN A 92 -61.26 -99.33 REMARK 500 GLU A 118 28.72 -140.27 REMARK 500 ARG A 135 -105.85 -105.72 REMARK 500 ASP A 314 -66.88 -129.24 REMARK 500 ASP A 399 -165.44 -76.03 REMARK 500 ASN A 448 23.98 -143.21 REMARK 500 ASN A 455 58.40 -146.30 REMARK 500 ASN A 455 49.07 -141.71 REMARK 500 THR A 567 -95.34 -127.50 REMARK 500 THR A 576 158.83 73.40 REMARK 500 ASP A 617 36.49 -90.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 OD1 REMARK 620 2 ASP A 158 O 72.4 REMARK 620 3 THR A 210 O 128.1 73.5 REMARK 620 4 THR A 210 OG1 162.1 112.2 68.9 REMARK 620 5 TRP A 212 O 86.2 129.0 85.8 102.2 REMARK 620 6 ASP A 214 OD1 88.8 141.7 139.8 77.1 80.8 REMARK 620 7 SER A 216 OG 87.1 71.5 117.2 78.5 154.7 74.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 382 NE2 REMARK 620 2 HEM A 701 NA 98.3 REMARK 620 3 HEM A 701 NB 88.8 91.6 REMARK 620 4 HEM A 701 NC 84.7 176.9 88.1 REMARK 620 5 HEM A 701 ND 94.0 88.5 177.1 91.6 REMARK 620 6 IMD A 705 N1 174.0 87.5 89.6 89.4 87.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KVJ RELATED DB: PDB REMARK 900 RELATED ID: 4KVK RELATED DB: PDB DBREF 4KVL A 10 618 UNP Q9M5J1 Q9M5J1_ORYSA 10 618 SEQADV 4KVL MET A -2 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL ARG A -1 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL GLY A 0 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL SER A 1 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL HIS A 2 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL HIS A 3 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL HIS A 4 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL HIS A 5 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL HIS A 6 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL HIS A 7 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL GLY A 8 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL SER A 9 UNP Q9M5J1 EXPRESSION TAG SEQADV 4KVL PHE A 379 UNP Q9M5J1 TYR 379 ENGINEERED MUTATION SEQRES 1 A 621 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 A 621 HIS PRO ASP LEU ARG ASP VAL PHE SER LYS MET SER PHE SEQRES 3 A 621 PHE ASP LYS ILE GLY PHE LEU PHE ILE HIS ALA PHE ASP SEQRES 4 A 621 LYS ARG ASN LEU TRP HIS LYS VAL PRO VAL PRO ILE GLY SEQRES 5 A 621 LEU LEU TYR LEU ASN THR ARG ARG THR LEU LEU GLU LYS SEQRES 6 A 621 TYR ASN LEU LEU ALA VAL GLY ARG SER SER HIS GLY ALA SEQRES 7 A 621 LEU PHE ASP PRO LYS GLU PHE LEU TYR ARG THR GLU ASP SEQRES 8 A 621 GLY LYS TYR ASN ASP PRO HIS ASN ALA GLU ALA GLY SER SEQRES 9 A 621 GLN ASN THR PHE PHE GLY ARG ASN MET GLU PRO VAL ASP SEQRES 10 A 621 GLN GLN ASP GLU LEU MET SER PRO ASP PRO PHE VAL VAL SEQRES 11 A 621 ALA THR LYS LEU LEU ALA ARG ARG GLU TYR LYS ASP THR SEQRES 12 A 621 GLY LYS GLN PHE ASN ILE LEU ALA ALA ALA TRP ILE GLN SEQRES 13 A 621 PHE MET VAL HIS ASP TRP MET ASP HIS MET GLU ASP THR SEQRES 14 A 621 GLY GLN ILE GLY ILE THR ALA PRO LYS GLU VAL ALA ASN SEQRES 15 A 621 GLU CYS PRO LEU LYS SER PHE LYS PHE HIS PRO THR LYS SEQRES 16 A 621 GLU LEU PRO THR ASN SER ASP GLY ILE LYS ILE GLY HIS SEQRES 17 A 621 TYR ASN ILE ARG THR ALA TRP TRP ASP GLY SER ALA VAL SEQRES 18 A 621 TYR GLY ASN ASN GLU GLU ARG ALA GLU LYS LEU ARG THR SEQRES 19 A 621 TYR VAL ASP GLY LYS LEU VAL ILE GLY ASP ASP GLY LEU SEQRES 20 A 621 LEU LEU HIS LYS GLU ASN GLY VAL ALA LEU SER GLY ASP SEQRES 21 A 621 ILE ARG ASN SER TRP ALA GLY VAL SER ILE LEU GLN ALA SEQRES 22 A 621 LEU PHE VAL LYS GLU HIS ASN ALA VAL CYS ASP ALA ILE SEQRES 23 A 621 LYS GLU GLU HIS PRO ASN LEU SER ASP GLU GLU LEU TYR SEQRES 24 A 621 ARG TYR ALA LYS LEU VAL THR SER ALA VAL ILE ALA LYS SEQRES 25 A 621 VAL HIS THR ILE ASP TRP THR VAL GLU LEU LEU LYS THR SEQRES 26 A 621 LYS THR MET ARG ALA ALA MET ARG ALA ASN TRP TYR GLY SEQRES 27 A 621 LEU LEU GLY LYS LYS ILE LYS ASP THR PHE GLY HIS ILE SEQRES 28 A 621 GLY GLY PRO ILE LEU GLY GLY LEU VAL GLY LEU LYS LYS SEQRES 29 A 621 PRO ASN ASN HIS GLY VAL PRO TYR SER LEU THR GLU GLU SEQRES 30 A 621 PHE THR SER VAL PHE ARG MET HIS SER LEU ILE PRO SER SEQRES 31 A 621 THR LEU LYS LEU ARG ASP PRO THR GLY GLN PRO ASP ALA SEQRES 32 A 621 ASN ASN SER PRO PRO CYS LEU GLU ASP ILE ASP ILE GLY SEQRES 33 A 621 GLU MET ILE GLY LEU LYS GLY GLU GLU GLN LEU SER LYS SEQRES 34 A 621 ILE GLY PHE GLU LYS GLN ALA LEU SER MET GLY TYR GLN SEQRES 35 A 621 ALA CYS GLY ALA LEU GLU LEU TRP ASN TYR PRO SER PHE SEQRES 36 A 621 PHE ARG ASN LEU ILE PRO GLN ASN LEU ASP GLY THR ASN SEQRES 37 A 621 ARG SER ASP ARG ILE ASP LEU ALA ALA LEU GLU VAL TYR SEQRES 38 A 621 ARG ASP ARG GLU ARG SER VAL PRO ARG TYR ASN GLU PHE SEQRES 39 A 621 ARG ARG ARG LEU PHE LEU ILE PRO ILE LYS SER TRP GLU SEQRES 40 A 621 ASP LEU THR SER ASP LYS ASP ALA ILE GLU THR ILE ARG SEQRES 41 A 621 ALA ILE TYR GLY ASP ASP VAL GLU LYS LEU ASP LEU LEU SEQRES 42 A 621 VAL GLY LEU MET ALA GLU LYS LYS ILE LYS GLY PHE ALA SEQRES 43 A 621 ILE SER GLU THR ALA PHE ASN ILE PHE ILE LEU MET ALA SEQRES 44 A 621 SER ARG ARG LEU GLU ALA ASP ARG PHE PHE THR SER ASN SEQRES 45 A 621 PHE ASN GLU GLU THR TYR THR LYS LYS GLY MET GLN TRP SEQRES 46 A 621 VAL LYS THR THR GLU GLY LEU ARG ASP VAL ILE ASN ARG SEQRES 47 A 621 HIS TYR PRO GLU ILE THR ALA LYS TRP MET LYS SER SER SEQRES 48 A 621 SER ALA PHE SER VAL TRP ASP ALA ASP TYR HET HEM A 701 43 HET PLM A 702 18 HET CA A 703 1 HET PLM A 704 18 HET IMD A 705 5 HET BOG A 706 20 HET 1PE A 707 16 HET PGE A 708 10 HET PGE A 709 10 HET BOG A 710 20 HET PG4 A 711 13 HET PGE A 712 10 HET PGE A 713 10 HET PGE A 714 10 HET PGE A 715 10 HET CL A 716 1 HET CL A 717 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PLM PALMITIC ACID HETNAM CA CALCIUM ION HETNAM IMD IMIDAZOLE HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETSYN HEM HEME HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE HETSYN 1PE PEG400 FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 PLM 2(C16 H32 O2) FORMUL 4 CA CA 2+ FORMUL 6 IMD C3 H5 N2 1+ FORMUL 7 BOG 2(C14 H28 O6) FORMUL 8 1PE C10 H22 O6 FORMUL 9 PGE 6(C6 H14 O4) FORMUL 12 PG4 C8 H18 O5 FORMUL 17 CL 2(CL 1-) FORMUL 19 HOH *505(H2 O) HELIX 1 1 HIS A 11 ASP A 13 5 3 HELIX 2 2 LEU A 14 MET A 21 1 8 HELIX 3 3 SER A 22 LYS A 37 1 16 HELIX 4 4 ARG A 38 ASN A 39 5 2 HELIX 5 5 LEU A 40 VAL A 44 5 5 HELIX 6 6 PRO A 45 ASN A 64 1 20 HELIX 7 7 ASP A 78 PHE A 82 5 5 HELIX 8 8 ASP A 123 LEU A 132 1 10 HELIX 9 9 ASN A 145 MET A 160 1 16 HELIX 10 10 PRO A 174 ASN A 179 1 6 HELIX 11 11 GLY A 215 GLY A 220 1 6 HELIX 12 12 ASN A 222 GLU A 227 1 6 HELIX 13 13 LYS A 228 ARG A 230 5 3 HELIX 14 14 TRP A 262 HIS A 287 1 26 HELIX 15 15 SER A 291 ASP A 314 1 24 HELIX 16 16 ASP A 314 LEU A 320 1 7 HELIX 17 17 THR A 322 GLY A 335 1 14 HELIX 18 18 GLY A 338 GLY A 346 1 9 HELIX 19 19 THR A 372 PHE A 379 1 8 HELIX 20 20 ARG A 380 ILE A 385 5 6 HELIX 21 21 GLY A 413 MET A 415 5 3 HELIX 22 22 ILE A 416 GLY A 428 1 13 HELIX 23 23 GLY A 428 TYR A 438 1 11 HELIX 24 24 PRO A 450 LEU A 456 5 7 HELIX 25 25 ASP A 471 ARG A 483 1 13 HELIX 26 26 ARG A 487 LEU A 495 1 9 HELIX 27 27 SER A 502 LEU A 506 5 5 HELIX 28 28 ASP A 509 GLY A 521 1 13 HELIX 29 29 ASP A 528 GLU A 536 1 9 HELIX 30 30 SER A 545 ALA A 562 1 18 HELIX 31 31 ASP A 563 THR A 567 5 5 HELIX 32 32 ASN A 571 THR A 576 1 6 HELIX 33 33 THR A 576 THR A 585 1 10 HELIX 34 34 GLY A 588 TYR A 597 1 10 HELIX 35 35 TYR A 597 MET A 605 1 9 SHEET 1 A 2 THR A 104 PHE A 105 0 SHEET 2 A 2 TYR A 206 ASN A 207 -1 O ASN A 207 N THR A 104 SHEET 1 B 2 ILE A 169 THR A 172 0 SHEET 2 B 2 SER A 185 PHE A 188 -1 O PHE A 188 N ILE A 169 SHEET 1 C 2 LEU A 194 PRO A 195 0 SHEET 2 C 2 ILE A 203 GLY A 204 -1 O GLY A 204 N LEU A 194 SHEET 1 D 2 THR A 388 ARG A 392 0 SHEET 2 D 2 CYS A 406 ASP A 411 -1 O ILE A 410 N LEU A 389 LINK OD1 ASP A 158 CA CA A 703 1555 1555 2.24 LINK O ASP A 158 CA CA A 703 1555 1555 2.45 LINK O THR A 210 CA CA A 703 1555 1555 2.43 LINK OG1 THR A 210 CA CA A 703 1555 1555 2.46 LINK O TRP A 212 CA CA A 703 1555 1555 2.42 LINK OD1 ASP A 214 CA CA A 703 1555 1555 2.35 LINK OG SER A 216 CA CA A 703 1555 1555 2.60 LINK NE2 HIS A 382 FE HEM A 701 1555 1555 1.98 LINK FE HEM A 701 N1 IMD A 705 1555 1555 2.03 CISPEP 1 SER A 121 PRO A 122 0 -5.80 CISPEP 2 SER A 121 PRO A 122 0 -5.70 CRYST1 72.887 130.202 188.173 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013720 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005314 0.00000