PDB Short entry for 4KXD HEADER HYDROLASE 25-MAY-13 4KXD TITLE CRYSTAL STRUCTURE OF HUMAN AMINOPEPTIDASE A COMPLEXED WITH GLUTAMATE TITLE 2 AND CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMYL AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 76-954; COMPND 5 SYNONYM: EAP, AMINOPEPTIDASE A, AP-A, DIFFERENTIATION ANTIGEN GP160; COMPND 6 EC: 3.4.11.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENPEP; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBACTM KEYWDS ZINC-AMINOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YANG,C.LIU,Y.Y.LIN,F.LI REVDAT 5 21-DEC-22 4KXD 1 SEQADV HETSYN REVDAT 4 29-JUL-20 4KXD 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 09-OCT-13 4KXD 1 JRNL REVDAT 2 04-SEP-13 4KXD 1 JRNL REVDAT 1 31-JUL-13 4KXD 0 JRNL AUTH Y.YANG,C.LIU,Y.L.LIN,F.LI JRNL TITL STRUCTURAL INSIGHTS INTO CENTRAL HYPERTENSION REGULATION BY JRNL TITL 2 HUMAN AMINOPEPTIDASE A. JRNL REF J.BIOL.CHEM. V. 288 25638 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23888046 JRNL DOI 10.1074/JBC.M113.494955 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 70532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3742 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9933 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 518 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 236 REMARK 3 SOLVENT ATOMS : 550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : -0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.327 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7596 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10348 ; 1.264 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 877 ; 5.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 367 ;37.296 ;24.523 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1249 ;16.677 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;23.467 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1156 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5765 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7596 ; 1.698 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 189 ;74.626 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7756 ;33.099 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 293 REMARK 3 RESIDUE RANGE : A 294 A 542 REMARK 3 RESIDUE RANGE : A 543 A 632 REMARK 3 RESIDUE RANGE : A 633 A 954 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8886 42.0838 37.4704 REMARK 3 T TENSOR REMARK 3 T11: 0.1254 T22: 0.2070 REMARK 3 T33: 0.2480 T12: 0.0229 REMARK 3 T13: 0.0415 T23: 0.1445 REMARK 3 L TENSOR REMARK 3 L11: 0.6859 L22: 1.2907 REMARK 3 L33: 0.5713 L12: 0.8289 REMARK 3 L13: -0.1894 L23: -0.1746 REMARK 3 S TENSOR REMARK 3 S11: 0.0669 S12: -0.2054 S13: -0.3423 REMARK 3 S21: -0.0847 S22: -0.2668 S23: -0.5187 REMARK 3 S31: -0.0303 S32: 0.0514 S33: 0.1999 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70533 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM CITRATE PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.02600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.05200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.02600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 158.05200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.02600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 158.05200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 79.02600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 158.05200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1583 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1648 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 608 REMARK 465 SER A 609 REMARK 465 ASN A 610 REMARK 465 PRO A 611 REMARK 465 GLU A 955 REMARK 465 SER A 956 REMARK 465 GLY A 957 REMARK 465 HIS A 958 REMARK 465 HIS A 959 REMARK 465 HIS A 960 REMARK 465 HIS A 961 REMARK 465 HIS A 962 REMARK 465 HIS A 963 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 149 CZ ARG A 149 NH1 0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 78 72.21 -113.24 REMARK 500 GLU A 138 -54.17 71.35 REMARK 500 GLU A 175 -109.02 -74.04 REMARK 500 GLU A 176 -34.42 158.32 REMARK 500 LEU A 177 151.52 -38.13 REMARK 500 SER A 180 36.38 -158.61 REMARK 500 THR A 356 -167.03 -126.75 REMARK 500 LEU A 372 -38.02 -130.69 REMARK 500 TRP A 399 -64.86 -103.56 REMARK 500 ASN A 402 -60.40 -91.23 REMARK 500 ASP A 444 -50.34 -122.40 REMARK 500 LYS A 494 135.66 79.16 REMARK 500 ARG A 528 8.92 53.07 REMARK 500 VAL A 552 -32.89 69.75 REMARK 500 ASN A 620 65.09 65.50 REMARK 500 ASP A 622 17.59 55.54 REMARK 500 ASN A 646 87.89 -164.14 REMARK 500 ASP A 757 109.96 -47.27 REMARK 500 SER A 794 10.04 -142.35 REMARK 500 THR A 883 152.34 69.65 REMARK 500 ASN A 900 15.98 -150.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 221 OD2 REMARK 620 2 GLU A 223 O 163.5 REMARK 620 3 GLU A1019 OE2 113.5 77.9 REMARK 620 4 HOH A1170 O 82.6 88.0 162.6 REMARK 620 5 HOH A1390 O 100.6 95.1 64.0 107.7 REMARK 620 6 HOH A1455 O 76.6 96.0 74.8 117.4 133.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 393 NE2 REMARK 620 2 HIS A 397 NE2 101.3 REMARK 620 3 GLU A 416 OE1 110.9 99.4 REMARK 620 N 1 2 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE INHIBITOR REMARK 630 MOLECULE NAME: 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 NAG A 1007 REMARK 630 NAG A 1018 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KX7 RELATED DB: PDB REMARK 900 RELATED ID: 4KX8 RELATED DB: PDB REMARK 900 RELATED ID: 4KX9 RELATED DB: PDB REMARK 900 RELATED ID: 4KXA RELATED DB: PDB REMARK 900 RELATED ID: 4KXB RELATED DB: PDB REMARK 900 RELATED ID: 4KXC RELATED DB: PDB DBREF 4KXD A 76 957 UNP Q07075 AMPE_HUMAN 76 957 SEQADV 4KXD ARG A 213 UNP Q07075 GLN 213 VARIANT SEQADV 4KXD ALA A 218 UNP Q07075 VAL 218 VARIANT SEQADV 4KXD HIS A 958 UNP Q07075 EXPRESSION TAG SEQADV 4KXD HIS A 959 UNP Q07075 EXPRESSION TAG SEQADV 4KXD HIS A 960 UNP Q07075 EXPRESSION TAG SEQADV 4KXD HIS A 961 UNP Q07075 EXPRESSION TAG SEQADV 4KXD HIS A 962 UNP Q07075 EXPRESSION TAG SEQADV 4KXD HIS A 963 UNP Q07075 EXPRESSION TAG SEQRES 1 A 888 ASP ILE CYS PRO ALA SER GLU ASP GLU SER GLY GLN TRP SEQRES 2 A 888 LYS ASN PHE ARG LEU PRO ASP PHE VAL ASN PRO VAL HIS SEQRES 3 A 888 TYR ASP LEU HIS VAL LYS PRO LEU LEU GLU GLU ASP THR SEQRES 4 A 888 TYR THR GLY THR VAL SER ILE SER ILE ASN LEU SER ALA SEQRES 5 A 888 PRO THR ARG TYR LEU TRP LEU HIS LEU ARG GLU THR ARG SEQRES 6 A 888 ILE THR ARG LEU PRO GLU LEU LYS ARG PRO SER GLY ASP SEQRES 7 A 888 GLN VAL GLN VAL ARG ARG CYS PHE GLU TYR LYS LYS GLN SEQRES 8 A 888 GLU TYR VAL VAL VAL GLU ALA GLU GLU GLU LEU THR PRO SEQRES 9 A 888 SER SER GLY ASP GLY LEU TYR LEU LEU THR MET GLU PHE SEQRES 10 A 888 ALA GLY TRP LEU ASN GLY SER LEU VAL GLY PHE TYR ARG SEQRES 11 A 888 THR THR TYR THR GLU ASN GLY ARG VAL LYS SER ILE ALA SEQRES 12 A 888 ALA THR ASP HIS GLU PRO THR ASP ALA ARG LYS SER PHE SEQRES 13 A 888 PRO CYS PHE ASP GLU PRO ASN LYS LYS ALA THR TYR THR SEQRES 14 A 888 ILE SER ILE THR HIS PRO LYS GLU TYR GLY ALA LEU SER SEQRES 15 A 888 ASN MET PRO VAL ALA LYS GLU GLU SER VAL ASP ASP LYS SEQRES 16 A 888 TRP THR ARG THR THR PHE GLU LYS SER VAL PRO MET SER SEQRES 17 A 888 THR TYR LEU VAL CYS PHE ALA VAL HIS GLN PHE ASP SER SEQRES 18 A 888 VAL LYS ARG ILE SER ASN SER GLY LYS PRO LEU THR ILE SEQRES 19 A 888 TYR VAL GLN PRO GLU GLN LYS HIS THR ALA GLU TYR ALA SEQRES 20 A 888 ALA ASN ILE THR LYS SER VAL PHE ASP TYR PHE GLU GLU SEQRES 21 A 888 TYR PHE ALA MET ASN TYR SER LEU PRO LYS LEU ASP LYS SEQRES 22 A 888 ILE ALA ILE PRO ASP PHE GLY THR GLY ALA MET GLU ASN SEQRES 23 A 888 TRP GLY LEU ILE THR TYR ARG GLU THR ASN LEU LEU TYR SEQRES 24 A 888 ASP PRO LYS GLU SER ALA SER SER ASN GLN GLN ARG VAL SEQRES 25 A 888 ALA THR VAL VAL ALA HIS GLU LEU VAL HIS GLN TRP PHE SEQRES 26 A 888 GLY ASN ILE VAL THR MET ASP TRP TRP GLU ASP LEU TRP SEQRES 27 A 888 LEU ASN GLU GLY PHE ALA SER PHE PHE GLU PHE LEU GLY SEQRES 28 A 888 VAL ASN HIS ALA GLU THR ASP TRP GLN MET ARG ASP GLN SEQRES 29 A 888 MET LEU LEU GLU ASP VAL LEU PRO VAL GLN GLU ASP ASP SEQRES 30 A 888 SER LEU MET SER SER HIS PRO ILE ILE VAL THR VAL THR SEQRES 31 A 888 THR PRO ASP GLU ILE THR SER VAL PHE ASP GLY ILE SER SEQRES 32 A 888 TYR SER LYS GLY SER SER ILE LEU ARG MET LEU GLU ASP SEQRES 33 A 888 TRP ILE LYS PRO GLU ASN PHE GLN LYS GLY CYS GLN MET SEQRES 34 A 888 TYR LEU GLU LYS TYR GLN PHE LYS ASN ALA LYS THR SER SEQRES 35 A 888 ASP PHE TRP ALA ALA LEU GLU GLU ALA SER ARG LEU PRO SEQRES 36 A 888 VAL LYS GLU VAL MET ASP THR TRP THR ARG GLN MET GLY SEQRES 37 A 888 TYR PRO VAL LEU ASN VAL ASN GLY VAL LYS ASN ILE THR SEQRES 38 A 888 GLN LYS ARG PHE LEU LEU ASP PRO ARG ALA ASN PRO SER SEQRES 39 A 888 GLN PRO PRO SER ASP LEU GLY TYR THR TRP ASN ILE PRO SEQRES 40 A 888 VAL LYS TRP THR GLU ASP ASN ILE THR SER SER VAL LEU SEQRES 41 A 888 PHE ASN ARG SER GLU LYS GLU GLY ILE THR LEU ASN SER SEQRES 42 A 888 SER ASN PRO SER GLY ASN ALA PHE LEU LYS ILE ASN PRO SEQRES 43 A 888 ASP HIS ILE GLY PHE TYR ARG VAL ASN TYR GLU VAL ALA SEQRES 44 A 888 THR TRP ASP SER ILE ALA THR ALA LEU SER LEU ASN HIS SEQRES 45 A 888 LYS THR PHE SER SER ALA ASP ARG ALA SER LEU ILE ASP SEQRES 46 A 888 ASP ALA PHE ALA LEU ALA ARG ALA GLN LEU LEU ASP TYR SEQRES 47 A 888 LYS VAL ALA LEU ASN LEU THR LYS TYR LEU LYS ARG GLU SEQRES 48 A 888 GLU ASN PHE LEU PRO TRP GLN ARG VAL ILE SER ALA VAL SEQRES 49 A 888 THR TYR ILE ILE SER MET PHE GLU ASP ASP LYS GLU LEU SEQRES 50 A 888 TYR PRO MET ILE GLU GLU TYR PHE GLN GLY GLN VAL LYS SEQRES 51 A 888 PRO ILE ALA ASP SER LEU GLY TRP ASN ASP ALA GLY ASP SEQRES 52 A 888 HIS VAL THR LYS LEU LEU ARG SER SER VAL LEU GLY PHE SEQRES 53 A 888 ALA CYS LYS MET GLY ASP ARG GLU ALA LEU ASN ASN ALA SEQRES 54 A 888 SER SER LEU PHE GLU GLN TRP LEU ASN GLY THR VAL SER SEQRES 55 A 888 LEU PRO VAL ASN LEU ARG LEU LEU VAL TYR ARG TYR GLY SEQRES 56 A 888 MET GLN ASN SER GLY ASN GLU ILE SER TRP ASN TYR THR SEQRES 57 A 888 LEU GLU GLN TYR GLN LYS THR SER LEU ALA GLN GLU LYS SEQRES 58 A 888 GLU LYS LEU LEU TYR GLY LEU ALA SER VAL LYS ASN VAL SEQRES 59 A 888 THR LEU LEU SER ARG TYR LEU ASP LEU LEU LYS ASP THR SEQRES 60 A 888 ASN LEU ILE LYS THR GLN ASP VAL PHE THR VAL ILE ARG SEQRES 61 A 888 TYR ILE SER TYR ASN SER TYR GLY LYS ASN MET ALA TRP SEQRES 62 A 888 ASN TRP ILE GLN LEU ASN TRP ASP TYR LEU VAL ASN ARG SEQRES 63 A 888 TYR THR LEU ASN ASN ARG ASN LEU GLY ARG ILE VAL THR SEQRES 64 A 888 ILE ALA GLU PRO PHE ASN THR GLU LEU GLN LEU TRP GLN SEQRES 65 A 888 MET GLU SER PHE PHE ALA LYS TYR PRO GLN ALA GLY ALA SEQRES 66 A 888 GLY GLU LYS PRO ARG GLU GLN VAL LEU GLU THR VAL LYS SEQRES 67 A 888 ASN ASN ILE GLU TRP LEU LYS GLN HIS ARG ASN THR ILE SEQRES 68 A 888 ARG GLU TRP PHE PHE ASN LEU LEU GLU SER GLY HIS HIS SEQRES 69 A 888 HIS HIS HIS HIS MODRES 4KXD ASN A 324 ASN GLYCOSYLATION SITE MODRES 4KXD ASN A 597 ASN GLYCOSYLATION SITE MODRES 4KXD ASN A 197 ASN GLYCOSYLATION SITE MODRES 4KXD ASN A 554 ASN GLYCOSYLATION SITE MODRES 4KXD ASN A 828 ASN GLYCOSYLATION SITE MODRES 4KXD ASN A 763 ASN GLYCOSYLATION SITE MODRES 4KXD ASN A 678 ASN GLYCOSYLATION SITE MODRES 4KXD ASN A 801 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG D 3 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG E 3 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET CA A1001 1 HET ZN A1002 1 HET NAG A1007 14 HET NAG A1018 14 HET GLU A1019 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM GLU GLUTAMIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 16(C8 H15 N O6) FORMUL 8 CA CA 2+ FORMUL 9 ZN ZN 2+ FORMUL 12 GLU C5 H9 N O4 FORMUL 13 HOH *550(H2 O) HELIX 1 1 GLY A 86 ASN A 90 5 5 HELIX 2 2 LEU A 110 GLU A 112 5 3 HELIX 3 3 LYS A 164 GLN A 166 5 3 HELIX 4 4 ASP A 226 PHE A 231 1 6 HELIX 5 5 SER A 283 VAL A 287 5 5 HELIX 6 6 GLN A 312 THR A 318 5 7 HELIX 7 7 ALA A 319 PHE A 337 1 19 HELIX 8 8 GLU A 369 LEU A 372 5 4 HELIX 9 9 ALA A 380 PHE A 400 1 21 HELIX 10 10 TRP A 408 ASP A 411 5 4 HELIX 11 11 LEU A 412 GLU A 431 1 20 HELIX 12 12 THR A 432 TRP A 434 5 3 HELIX 13 13 GLN A 435 ASP A 444 1 10 HELIX 14 14 ASP A 444 ASP A 452 1 9 HELIX 15 15 THR A 466 VAL A 473 1 8 HELIX 16 16 ASP A 475 LYS A 494 1 20 HELIX 17 17 LYS A 494 TYR A 509 1 16 HELIX 18 18 LYS A 515 ARG A 528 1 14 HELIX 19 19 PRO A 530 THR A 537 1 8 HELIX 20 20 PRO A 621 ILE A 624 5 4 HELIX 21 21 GLU A 632 HIS A 647 1 16 HELIX 22 22 LYS A 648 PHE A 650 5 3 HELIX 23 23 SER A 651 ALA A 668 1 18 HELIX 24 24 ASP A 672 LEU A 679 1 8 HELIX 25 25 THR A 680 LYS A 681 5 2 HELIX 26 26 TYR A 682 GLU A 686 5 5 HELIX 27 27 ASN A 688 PHE A 706 1 19 HELIX 28 28 GLU A 711 GLY A 732 1 22 HELIX 29 29 ASP A 738 MET A 755 1 18 HELIX 30 30 ASP A 757 ASN A 773 1 17 HELIX 31 31 LEU A 782 GLY A 795 1 14 HELIX 32 32 ASN A 796 THR A 810 1 15 HELIX 33 33 LEU A 812 SER A 825 1 14 HELIX 34 34 ASN A 828 LEU A 839 1 12 HELIX 35 35 LYS A 846 GLN A 848 5 3 HELIX 36 36 ASP A 849 TYR A 859 1 11 HELIX 37 37 TYR A 862 ASN A 874 1 13 HELIX 38 38 ASN A 874 THR A 883 1 10 HELIX 39 39 ASN A 886 ILE A 892 1 7 HELIX 40 40 VAL A 893 GLU A 897 5 5 HELIX 41 41 THR A 901 TYR A 915 1 15 HELIX 42 42 ALA A 918 ALA A 920 5 3 HELIX 43 43 GLY A 921 LEU A 954 1 34 SHEET 1 A 8 GLN A 154 VAL A 155 0 SHEET 2 A 8 ARG A 140 LYS A 148 -1 N LEU A 147 O VAL A 155 SHEET 3 A 8 TYR A 186 TRP A 195 -1 O THR A 189 N GLU A 146 SHEET 4 A 8 THR A 114 LEU A 125 -1 N ILE A 121 O LEU A 188 SHEET 5 A 8 VAL A 97 LEU A 109 -1 N VAL A 100 O SER A 122 SHEET 6 A 8 THR A 242 PRO A 250 1 O THR A 242 N TYR A 102 SHEET 7 A 8 TRP A 271 PHE A 276 -1 O PHE A 276 N ILE A 245 SHEET 8 A 8 VAL A 261 SER A 266 -1 N LYS A 263 O THR A 275 SHEET 1 B 3 TYR A 131 HIS A 135 0 SHEET 2 B 3 TYR A 168 ALA A 173 -1 O VAL A 169 N LEU A 134 SHEET 3 B 3 VAL A 157 TYR A 163 -1 N PHE A 161 O VAL A 170 SHEET 1 C 4 GLY A 202 GLU A 210 0 SHEET 2 C 4 ARG A 213 ASP A 221 -1 O LYS A 215 N TYR A 208 SHEET 3 C 4 PHE A 289 HIS A 292 -1 O VAL A 291 N ALA A 218 SHEET 4 C 4 GLY A 254 SER A 257 -1 N GLY A 254 O HIS A 292 SHEET 1 D 5 ASP A 295 ILE A 300 0 SHEET 2 D 5 PRO A 306 VAL A 311 -1 O LEU A 307 N ARG A 299 SHEET 3 D 5 LEU A 346 ALA A 350 1 O LYS A 348 N TYR A 310 SHEET 4 D 5 LEU A 364 TYR A 367 1 O ILE A 365 N ASP A 347 SHEET 5 D 5 ALA A 358 MET A 359 -1 N MET A 359 O THR A 366 SHEET 1 E 2 VAL A 404 MET A 406 0 SHEET 2 E 2 LYS A 512 ALA A 514 1 O ALA A 514 N THR A 405 SHEET 1 F 4 ILE A 604 THR A 605 0 SHEET 2 F 4 ASN A 554 ARG A 559 -1 N ILE A 555 O ILE A 604 SHEET 3 F 4 PRO A 545 ASN A 550 -1 N ASN A 550 O ASN A 554 SHEET 4 F 4 ARG A 628 ASN A 630 1 O ARG A 628 N LEU A 547 SHEET 1 G 3 ILE A 590 PHE A 596 0 SHEET 2 G 3 ILE A 581 GLU A 587 -1 N VAL A 583 O VAL A 594 SHEET 3 G 3 LYS A 618 ILE A 619 -1 O LYS A 618 N THR A 586 SSBOND 1 CYS A 78 CYS A 160 1555 1555 2.07 LINK ND2 ASN A 197 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 324 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 554 C1 NAG A1007 1555 1555 1.44 LINK ND2 ASN A 597 C1 NAG A1018 1555 1555 1.44 LINK ND2 ASN A 678 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 763 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 801 C1 NAG F 1 1555 1555 1.46 LINK ND2 ASN A 828 C1 NAG G 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O4 NAG D 2 C1 NAG D 3 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG E 2 C1 NAG E 3 1555 1555 1.46 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK OD2 ASP A 221 CA CA A1001 1555 1555 2.39 LINK O GLU A 223 CA CA A1001 1555 1555 2.30 LINK NE2 HIS A 393 ZN ZN A1002 1555 1555 2.26 LINK NE2 HIS A 397 ZN ZN A1002 1555 1555 2.17 LINK OE1 GLU A 416 ZN ZN A1002 1555 1555 1.97 LINK CA CA A1001 OE2 GLU A1019 1555 1555 2.74 LINK CA CA A1001 O HOH A1170 1555 1555 2.42 LINK CA CA A1001 O HOH A1390 1555 1555 2.65 LINK CA CA A1001 O HOH A1455 1555 1555 2.31 CISPEP 1 GLU A 223 PRO A 224 0 1.74 CISPEP 2 GLN A 570 PRO A 571 0 -8.85 CRYST1 142.231 142.231 237.078 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007031 0.004059 0.000000 0.00000 SCALE2 0.000000 0.008118 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004218 0.00000