PDB Short entry for 4L5L HEADER TRANSFERASE 11-JUN-13 4L5L TITLE CRYSTAL STRUCTURE OF 26 KDA GST OF CLONORCHIS SINENSIS IN P212121 TITLE 2 SYMMETRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLUTATHIONE TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLONORCHIS SINENSIS; SOURCE 3 ORGANISM_COMMON: ORIENTAL LIVER FLUKE; SOURCE 4 ORGANISM_TAXID: 79923; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS TRANSFERASE, GSH BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.CHUNG,Y.H.HAN REVDAT 3 20-MAR-24 4L5L 1 REMARK REVDAT 2 15-NOV-17 4L5L 1 REMARK REVDAT 1 04-SEP-13 4L5L 0 JRNL AUTH Y.H.HAN,S.J.HONG,H.K.CHEONG,Y.J.CHUNG JRNL TITL CRYSTAL STRUCTURES OF 26KDA CLONORCHIS SINENSIS GLUTATHIONE JRNL TITL 2 S-TRANSFERASE REVEAL ZINC BINDING AND PUTATIVE METAL JRNL TITL 3 BINDING. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 438 457 2013 JRNL REFN ISSN 0006-291X JRNL PMID 23916611 JRNL DOI 10.1016/J.BBRC.2013.07.102 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1404 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1897 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : -1.34000 REMARK 3 B33 (A**2) : 2.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.002 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3691 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3434 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5009 ; 1.778 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7908 ; 0.872 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 6.076 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;33.054 ;23.820 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;16.206 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.296 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4177 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 896 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2184 ; 1.018 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3516 ; 1.802 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1541 ; 2.898 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1537 ; 4.267 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4L5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23985 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27909 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 60.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.17200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH6.5, 5MM ZINC SULFATE, 10% REMARK 280 PEG MME 550, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.13600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.35050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.72750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.35050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.13600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.72750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 218 REMARK 465 LYS B 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 108 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 29 NE2 HIS A 31 2.00 REMARK 500 O HOH A 499 O HOH A 500 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 29 CB GLU A 29 CG 0.130 REMARK 500 GLU A 29 CG GLU A 29 CD 0.118 REMARK 500 GLU A 29 CD GLU A 29 OE2 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 29 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 73 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 GLU B 29 OE1 - CD - OE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 67 109.68 84.69 REMARK 500 ASP A 166 89.01 -162.88 REMARK 500 GLN B 67 115.32 77.97 REMARK 500 THR B 114 21.29 -78.47 REMARK 500 ASN B 204 -169.36 -118.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 73 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 26 OD1 REMARK 620 2 HIS A 79 NE2 128.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 26 OD1 REMARK 620 2 ASP B 26 OD2 62.5 REMARK 620 3 HIS B 79 NE2 115.1 101.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ISO RELATED DB: PDB REMARK 900 RELATED ID: 4L5O RELATED DB: PDB DBREF 4L5L A 1 218 UNP Q25595 Q25595_CLOSI 1 218 DBREF 4L5L B 1 218 UNP Q25595 Q25595_CLOSI 1 218 SEQRES 1 A 218 MET ALA PRO VAL LEU GLY TYR TRP LYS ILE ARG GLY LEU SEQRES 2 A 218 ALA GLN PRO ILE ARG LEU LEU LEU GLU TYR VAL GLY ASP SEQRES 3 A 218 SER TYR GLU GLU HIS SER TYR GLY ARG CYS ASP GLY GLU SEQRES 4 A 218 LYS TRP GLN ASN ASP LYS HIS ASN LEU GLY LEU GLU LEU SEQRES 5 A 218 PRO ASN LEU PRO TYR TYR LYS ASP GLY ASN PHE SER LEU SEQRES 6 A 218 THR GLN SER LEU ALA ILE LEU ARG TYR ILE ALA ASP LYS SEQRES 7 A 218 HIS ASN MET ILE GLY ASN THR PRO VAL GLU ARG ALA LYS SEQRES 8 A 218 ILE SER MET ILE GLU GLY GLY LEU VAL ASP LEU ARG ALA SEQRES 9 A 218 GLY VAL SER ARG ILE ALA TYR GLN GLU THR PHE GLU GLN SEQRES 10 A 218 LEU LYS VAL PRO TYR LEU GLN GLN LEU PRO SER THR LEU SEQRES 11 A 218 ARG MET TRP SER GLN PHE LEU GLY ASN ASN SER TYR LEU SEQRES 12 A 218 HIS GLY SER THR PRO THR HIS LEU ASP PHE MET PHE TYR SEQRES 13 A 218 GLU ALA LEU ASP VAL ILE ARG TYR LEU ASP PRO THR SER SEQRES 14 A 218 VAL GLU ALA PHE PRO ASN LEU MET GLN PHE ILE HIS ARG SEQRES 15 A 218 ILE GLU ALA LEU PRO ASN ILE LYS ALA PHE MET GLU SER SEQRES 16 A 218 ASP ARG PHE ILE LYS TRP PRO LEU ASN GLY TRP SER ALA SEQRES 17 A 218 TYR PHE GLY GLY GLY ASP ALA PRO PRO LYS SEQRES 1 B 218 MET ALA PRO VAL LEU GLY TYR TRP LYS ILE ARG GLY LEU SEQRES 2 B 218 ALA GLN PRO ILE ARG LEU LEU LEU GLU TYR VAL GLY ASP SEQRES 3 B 218 SER TYR GLU GLU HIS SER TYR GLY ARG CYS ASP GLY GLU SEQRES 4 B 218 LYS TRP GLN ASN ASP LYS HIS ASN LEU GLY LEU GLU LEU SEQRES 5 B 218 PRO ASN LEU PRO TYR TYR LYS ASP GLY ASN PHE SER LEU SEQRES 6 B 218 THR GLN SER LEU ALA ILE LEU ARG TYR ILE ALA ASP LYS SEQRES 7 B 218 HIS ASN MET ILE GLY ASN THR PRO VAL GLU ARG ALA LYS SEQRES 8 B 218 ILE SER MET ILE GLU GLY GLY LEU VAL ASP LEU ARG ALA SEQRES 9 B 218 GLY VAL SER ARG ILE ALA TYR GLN GLU THR PHE GLU GLN SEQRES 10 B 218 LEU LYS VAL PRO TYR LEU GLN GLN LEU PRO SER THR LEU SEQRES 11 B 218 ARG MET TRP SER GLN PHE LEU GLY ASN ASN SER TYR LEU SEQRES 12 B 218 HIS GLY SER THR PRO THR HIS LEU ASP PHE MET PHE TYR SEQRES 13 B 218 GLU ALA LEU ASP VAL ILE ARG TYR LEU ASP PRO THR SER SEQRES 14 B 218 VAL GLU ALA PHE PRO ASN LEU MET GLN PHE ILE HIS ARG SEQRES 15 B 218 ILE GLU ALA LEU PRO ASN ILE LYS ALA PHE MET GLU SER SEQRES 16 B 218 ASP ARG PHE ILE LYS TRP PRO LEU ASN GLY TRP SER ALA SEQRES 17 B 218 TYR PHE GLY GLY GLY ASP ALA PRO PRO LYS HET GSH A 301 20 HET ZN A 302 1 HET MES A 303 12 HET GSH B 301 20 HET ZN B 302 1 HET MES B 303 12 HETNAM GSH GLUTATHIONE HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 GSH 2(C10 H17 N3 O6 S) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 MES 2(C6 H13 N O4 S) FORMUL 9 HOH *179(H2 O) HELIX 1 1 ALA A 14 GLY A 25 1 12 HELIX 2 2 ASP A 37 LEU A 48 1 12 HELIX 3 3 GLN A 67 HIS A 79 1 13 HELIX 4 4 THR A 85 TYR A 111 1 27 HELIX 5 5 THR A 114 GLY A 138 1 25 HELIX 6 6 THR A 149 ASP A 166 1 18 HELIX 7 7 ASP A 166 ALA A 172 1 7 HELIX 8 8 PHE A 173 LEU A 186 1 14 HELIX 9 9 LEU A 186 SER A 195 1 10 HELIX 10 10 ALA B 14 GLY B 25 1 12 HELIX 11 11 ASP B 37 LEU B 48 1 12 HELIX 12 12 GLN B 67 LYS B 78 1 12 HELIX 13 13 THR B 85 TYR B 111 1 27 HELIX 14 14 THR B 114 GLY B 138 1 25 HELIX 15 15 THR B 149 ASP B 166 1 18 HELIX 16 16 ASP B 166 ALA B 172 1 7 HELIX 17 17 PHE B 173 LEU B 186 1 14 HELIX 18 18 LEU B 186 SER B 195 1 10 SHEET 1 A 4 GLU A 29 TYR A 33 0 SHEET 2 A 4 VAL A 4 TRP A 8 1 N TYR A 7 O TYR A 33 SHEET 3 A 4 TYR A 57 ASP A 60 -1 O LYS A 59 N VAL A 4 SHEET 4 A 4 PHE A 63 THR A 66 -1 O PHE A 63 N ASP A 60 SHEET 1 B 4 GLU B 29 TYR B 33 0 SHEET 2 B 4 VAL B 4 TRP B 8 1 N LEU B 5 O GLU B 29 SHEET 3 B 4 TYR B 57 ASP B 60 -1 O TYR B 57 N GLY B 6 SHEET 4 B 4 PHE B 63 THR B 66 -1 O PHE B 63 N ASP B 60 LINK OD1 ASP A 26 ZN ZN A 302 1555 1555 2.00 LINK NE2 HIS A 79 ZN ZN A 302 1555 1555 2.02 LINK OD1 ASP B 26 ZN ZN B 302 1555 1555 2.04 LINK OD2 ASP B 26 ZN ZN B 302 1555 1555 2.08 LINK NE2 HIS B 79 ZN ZN B 302 1555 1555 2.18 CISPEP 1 LEU A 55 PRO A 56 0 1.04 CISPEP 2 TRP A 201 PRO A 202 0 -3.80 CISPEP 3 LEU B 55 PRO B 56 0 -2.55 CISPEP 4 TRP B 201 PRO B 202 0 -4.34 SITE 1 AC1 12 TYR A 7 TRP A 8 LEU A 13 TRP A 41 SITE 2 AC1 12 LYS A 45 ASN A 54 LEU A 55 PRO A 56 SITE 3 AC1 12 GLN A 67 SER A 68 HOH A 401 ASP B 101 SITE 1 AC2 4 VAL A 24 ASP A 26 HIS A 46 HIS A 79 SITE 1 AC3 5 TYR A 23 VAL A 24 LEU A 186 PRO A 187 SITE 2 AC3 5 ASN A 188 SITE 1 AC4 12 ASP A 101 HOH A 472 TYR B 7 TRP B 8 SITE 2 AC4 12 TRP B 41 LYS B 45 ASN B 54 LEU B 55 SITE 3 AC4 12 PRO B 56 GLN B 67 SER B 68 HOH B 401 SITE 1 AC5 3 ASP B 26 HIS B 46 HIS B 79 SITE 1 AC6 4 TYR B 23 VAL B 24 PRO B 187 ASN B 188 CRYST1 66.272 67.455 120.701 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008285 0.00000