PDB Short entry for 4L8R HEADER RNA/RNA BINDING PROTEIN/HYDROLASE 17-JUN-13 4L8R TITLE STRUCTURE OF MRNA STEM-LOOP, HUMAN STEM-LOOP BINDING PROTEIN AND TITLE 2 3'HEXO TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE MRNA STEM-LOOP; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 3'-5' EXORIBONUCLEASE 1; COMPND 7 CHAIN: B, E; COMPND 8 FRAGMENT: SAP DOMAIN AND NUCLEASE DOMAIN, UNP RESIDUES 55-349; COMPND 9 SYNONYM: 3'-5' EXONUCLEASE ERI1, ERI-1 HOMOLOG, HISTONE MRNA 3'-END- COMPND 10 SPECIFIC EXORIBONUCLEASE, HISTONE MRNA 3'-EXONUCLEASE 1, PROTEIN COMPND 11 3'HEXO, HEXO; COMPND 12 EC: 3.1.-.-; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: HISTONE RNA HAIRPIN-BINDING PROTEIN; COMPND 16 CHAIN: C; COMPND 17 FRAGMENT: RNA-BINDING DOMAIN, UNP RESIDUES 125-223; COMPND 18 SYNONYM: HISTONE STEM-LOOP-BINDING PROTEIN; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED BY IDT; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN; SOURCE 7 ORGANISM_TAXID: 9606; SOURCE 8 GENE: 3'EXO, ERI1, THEX1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) STAR; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET-24D; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 GENE: HBP, SLBP; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) STAR; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS RNA-RNA BINDING PROTEIN-HYDROLASE COMPLEX, HISTONE MRNA 3'-END KEYWDS 2 PROCESSING, HISTONE MRNA TRANSLATION, MICRORNA HOMEOSTASIS, 5.8S KEYWDS 3 RRNA 3 -END MATURATION, ZFP100, LSM11, NUCLEUS EXPDTA X-RAY DIFFRACTION AUTHOR D.TAN,L.TONG REVDAT 2 15-NOV-17 4L8R 1 REMARK REVDAT 1 10-JUL-13 4L8R 0 SPRSDE 10-JUL-13 4L8R 4HXH JRNL AUTH D.TAN,W.F.MARZLUFF,Z.DOMINSKI,L.TONG JRNL TITL STRUCTURE OF HISTONE MRNA STEM-LOOP, HUMAN STEM-LOOP BINDING JRNL TITL 2 PROTEIN, AND 3'HEXO TERNARY COMPLEX. JRNL REF SCIENCE V. 339 318 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23329046 JRNL DOI 10.1126/SCIENCE.1228705 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 542066.230 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 53219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2634 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4142 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 223 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5083 REMARK 3 NUCLEIC ACID ATOMS : 918 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 20.10000 REMARK 3 B22 (A**2) : -7.57000 REMARK 3 B33 (A**2) : -12.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.110 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.520 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.610 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.700 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.380 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 27.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4L8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB THEN SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% (W/V) TACSIMATE (PH 6.0), 18% (W/V) REMARK 280 PEG3350, MACROSEEDING, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.87900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.31800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.40100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.31800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.87900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.40100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 55 REMARK 465 SER B 56 REMARK 465 SER B 57 REMARK 465 ALA B 58 REMARK 465 SER B 59 REMARK 465 ASP B 60 REMARK 465 PHE B 61 REMARK 465 SER B 62 REMARK 465 LEU B 117 REMARK 465 LYS B 118 REMARK 465 GLU B 119 REMARK 465 SER B 120 REMARK 465 ASN B 121 REMARK 465 PHE B 122 REMARK 465 ALA B 123 REMARK 465 PRO B 271 REMARK 465 ARG B 272 REMARK 465 SER B 273 REMARK 465 LYS B 349 REMARK 465 LEU B 350 REMARK 465 GLU B 351 REMARK 465 HIS B 352 REMARK 465 HIS B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 MET C 104 REMARK 465 GLY C 105 REMARK 465 SER C 106 REMARK 465 SER C 107 REMARK 465 HIS C 108 REMARK 465 HIS C 109 REMARK 465 HIS C 110 REMARK 465 HIS C 111 REMARK 465 HIS C 112 REMARK 465 HIS C 113 REMARK 465 SER C 114 REMARK 465 SER C 115 REMARK 465 GLY C 116 REMARK 465 LEU C 117 REMARK 465 VAL C 118 REMARK 465 PRO C 119 REMARK 465 ARG C 120 REMARK 465 GLY C 121 REMARK 465 SER C 122 REMARK 465 HIS C 123 REMARK 465 MET C 124 REMARK 465 PRO C 125 REMARK 465 ALA C 126 REMARK 465 PRO C 159 REMARK 465 ARG C 160 REMARK 465 HIS C 161 REMARK 465 LEU C 162 REMARK 465 ARG C 163 REMARK 465 GLN C 164 REMARK 465 PRO C 200 REMARK 465 ALA C 201 REMARK 465 GLU C 202 REMARK 465 GLU C 203 REMARK 465 GLY C 204 REMARK 465 CYS C 205 REMARK 465 ASP C 206 REMARK 465 LEU C 207 REMARK 465 GLN C 208 REMARK 465 GLU C 209 REMARK 465 ILE C 210 REMARK 465 HIS C 211 REMARK 465 PRO C 212 REMARK 465 VAL C 213 REMARK 465 ASP C 214 REMARK 465 LEU C 215 REMARK 465 GLU C 216 REMARK 465 SER C 217 REMARK 465 ALA C 218 REMARK 465 GLU C 219 REMARK 465 SER C 220 REMARK 465 SER C 221 REMARK 465 SER C 222 REMARK 465 GLU C 223 REMARK 465 C D 1 REMARK 465 C D 2 REMARK 465 A D 3 REMARK 465 A D 4 REMARK 465 A D 5 REMARK 465 G D 6 REMARK 465 G D 7 REMARK 465 THR E 55 REMARK 465 SER E 56 REMARK 465 SER E 57 REMARK 465 ALA E 58 REMARK 465 SER E 59 REMARK 465 ASP E 60 REMARK 465 PHE E 61 REMARK 465 SER E 62 REMARK 465 ASP E 63 REMARK 465 LEU E 117 REMARK 465 LYS E 118 REMARK 465 GLU E 119 REMARK 465 SER E 120 REMARK 465 ASN E 121 REMARK 465 PHE E 122 REMARK 465 ALA E 123 REMARK 465 ASP E 124 REMARK 465 VAL E 270 REMARK 465 PRO E 271 REMARK 465 ARG E 272 REMARK 465 SER E 273 REMARK 465 GLN E 274 REMARK 465 GLU E 351 REMARK 465 HIS E 352 REMARK 465 HIS E 353 REMARK 465 HIS E 354 REMARK 465 HIS E 355 REMARK 465 HIS E 356 REMARK 465 HIS E 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 C D 8 P OP1 OP2 O5' C5' C4' O4' REMARK 470 C D 8 C3' C2' O2' C1' N1 C2 O2 REMARK 470 C D 8 N3 C4 N4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C A 1 O3' C A 2 P -0.107 REMARK 500 C D 8 O3' U D 9 P -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 294 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 PRO E 292 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 146 55.25 -96.54 REMARK 500 ILE B 178 -71.24 -92.31 REMARK 500 THR B 221 -77.59 -102.91 REMARK 500 ALA B 324 37.70 70.54 REMARK 500 ASN C 147 20.15 -79.62 REMARK 500 THR E 221 -79.66 -110.01 REMARK 500 PRO E 292 -38.01 -23.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 4L8R B 55 349 UNP Q8IV48 ERI1_HUMAN 55 349 DBREF 4L8R C 125 223 UNP Q14493 SLBP_HUMAN 125 223 DBREF 4L8R E 55 349 UNP Q8IV48 ERI1_HUMAN 55 349 DBREF 4L8R A 1 26 PDB 4L8R 4L8R 1 26 DBREF 4L8R D 1 26 PDB 4L8R 4L8R 1 26 SEQADV 4L8R LEU B 350 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R GLU B 351 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS B 352 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS B 353 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS B 354 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS B 355 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS B 356 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS B 357 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R MET C 104 UNP Q14493 EXPRESSION TAG SEQADV 4L8R GLY C 105 UNP Q14493 EXPRESSION TAG SEQADV 4L8R SER C 106 UNP Q14493 EXPRESSION TAG SEQADV 4L8R SER C 107 UNP Q14493 EXPRESSION TAG SEQADV 4L8R HIS C 108 UNP Q14493 EXPRESSION TAG SEQADV 4L8R HIS C 109 UNP Q14493 EXPRESSION TAG SEQADV 4L8R HIS C 110 UNP Q14493 EXPRESSION TAG SEQADV 4L8R HIS C 111 UNP Q14493 EXPRESSION TAG SEQADV 4L8R HIS C 112 UNP Q14493 EXPRESSION TAG SEQADV 4L8R HIS C 113 UNP Q14493 EXPRESSION TAG SEQADV 4L8R SER C 114 UNP Q14493 EXPRESSION TAG SEQADV 4L8R SER C 115 UNP Q14493 EXPRESSION TAG SEQADV 4L8R GLY C 116 UNP Q14493 EXPRESSION TAG SEQADV 4L8R LEU C 117 UNP Q14493 EXPRESSION TAG SEQADV 4L8R VAL C 118 UNP Q14493 EXPRESSION TAG SEQADV 4L8R PRO C 119 UNP Q14493 EXPRESSION TAG SEQADV 4L8R ARG C 120 UNP Q14493 EXPRESSION TAG SEQADV 4L8R GLY C 121 UNP Q14493 EXPRESSION TAG SEQADV 4L8R SER C 122 UNP Q14493 EXPRESSION TAG SEQADV 4L8R HIS C 123 UNP Q14493 EXPRESSION TAG SEQADV 4L8R MET C 124 UNP Q14493 EXPRESSION TAG SEQADV 4L8R LEU E 350 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R GLU E 351 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS E 352 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS E 353 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS E 354 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS E 355 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS E 356 UNP Q8IV48 EXPRESSION TAG SEQADV 4L8R HIS E 357 UNP Q8IV48 EXPRESSION TAG SEQRES 1 A 26 C C A A A G G C U C U U U SEQRES 2 A 26 U C A G A G C C A C C C A SEQRES 1 B 303 THR SER SER ALA SER ASP PHE SER ASP PRO VAL TYR LYS SEQRES 2 B 303 GLU ILE ALA ILE THR ASN GLY CYS ILE ASN ARG MSE SER SEQRES 3 B 303 LYS GLU GLU LEU ARG ALA LYS LEU SER GLU PHE LYS LEU SEQRES 4 B 303 GLU THR ARG GLY VAL LYS ASP VAL LEU LYS LYS ARG LEU SEQRES 5 B 303 LYS ASN TYR TYR LYS LYS GLN LYS LEU MSE LEU LYS GLU SEQRES 6 B 303 SER ASN PHE ALA ASP SER TYR TYR ASP TYR ILE CYS ILE SEQRES 7 B 303 ILE ASP PHE GLU ALA THR CYS GLU GLU GLY ASN PRO PRO SEQRES 8 B 303 GLU PHE VAL HIS GLU ILE ILE GLU PHE PRO VAL VAL LEU SEQRES 9 B 303 LEU ASN THR HIS THR LEU GLU ILE GLU ASP THR PHE GLN SEQRES 10 B 303 GLN TYR VAL ARG PRO GLU ILE ASN THR GLN LEU SER ASP SEQRES 11 B 303 PHE CYS ILE SER LEU THR GLY ILE THR GLN ASP GLN VAL SEQRES 12 B 303 ASP ARG ALA ASP THR PHE PRO GLN VAL LEU LYS LYS VAL SEQRES 13 B 303 ILE ASP TRP MSE LYS LEU LYS GLU LEU GLY THR LYS TYR SEQRES 14 B 303 LYS TYR SER LEU LEU THR ASP GLY SER TRP ASP MSE SER SEQRES 15 B 303 LYS PHE LEU ASN ILE GLN CYS GLN LEU SER ARG LEU LYS SEQRES 16 B 303 TYR PRO PRO PHE ALA LYS LYS TRP ILE ASN ILE ARG LYS SEQRES 17 B 303 SER TYR GLY ASN PHE TYR LYS VAL PRO ARG SER GLN THR SEQRES 18 B 303 LYS LEU THR ILE MSE LEU GLU LYS LEU GLY MSE ASP TYR SEQRES 19 B 303 ASP GLY ARG PRO HIS CYS GLY LEU ASP ASP SER LYS ASN SEQRES 20 B 303 ILE ALA ARG ILE ALA VAL ARG MSE LEU GLN ASP GLY CYS SEQRES 21 B 303 GLU LEU ARG ILE ASN GLU LYS MSE HIS ALA GLY GLN LEU SEQRES 22 B 303 MSE SER VAL SER SER SER LEU PRO ILE GLU GLY THR PRO SEQRES 23 B 303 PRO PRO GLN MSE PRO HIS PHE ARG LYS LEU GLU HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS SEQRES 1 C 120 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 120 LEU VAL PRO ARG GLY SER HIS MET PRO ALA ASP PHE GLU SEQRES 3 C 120 THR ASP GLU SER VAL LEU MET ARG ARG GLN LYS GLN ILE SEQRES 4 C 120 ASN TYR GLY LYS ASN THR ILE ALA TYR ASP ARG TYR ILE SEQRES 5 C 120 LYS GLU VAL PRO ARG HIS LEU ARG GLN PRO GLY ILE HIS SEQRES 6 C 120 PRO LYS THR PRO ASN LYS PHE LYS LYS TYR SER ARG ARG SEQRES 7 C 120 SER TRP ASP GLN GLN ILE LYS LEU TRP LYS VAL ALA LEU SEQRES 8 C 120 HIS PHE TRP ASP PRO PRO ALA GLU GLU GLY CYS ASP LEU SEQRES 9 C 120 GLN GLU ILE HIS PRO VAL ASP LEU GLU SER ALA GLU SER SEQRES 10 C 120 SER SER GLU SEQRES 1 D 26 C C A A A G G C U C U U U SEQRES 2 D 26 U C A G A G C C A C C C A SEQRES 1 E 303 THR SER SER ALA SER ASP PHE SER ASP PRO VAL TYR LYS SEQRES 2 E 303 GLU ILE ALA ILE THR ASN GLY CYS ILE ASN ARG MSE SER SEQRES 3 E 303 LYS GLU GLU LEU ARG ALA LYS LEU SER GLU PHE LYS LEU SEQRES 4 E 303 GLU THR ARG GLY VAL LYS ASP VAL LEU LYS LYS ARG LEU SEQRES 5 E 303 LYS ASN TYR TYR LYS LYS GLN LYS LEU MSE LEU LYS GLU SEQRES 6 E 303 SER ASN PHE ALA ASP SER TYR TYR ASP TYR ILE CYS ILE SEQRES 7 E 303 ILE ASP PHE GLU ALA THR CYS GLU GLU GLY ASN PRO PRO SEQRES 8 E 303 GLU PHE VAL HIS GLU ILE ILE GLU PHE PRO VAL VAL LEU SEQRES 9 E 303 LEU ASN THR HIS THR LEU GLU ILE GLU ASP THR PHE GLN SEQRES 10 E 303 GLN TYR VAL ARG PRO GLU ILE ASN THR GLN LEU SER ASP SEQRES 11 E 303 PHE CYS ILE SER LEU THR GLY ILE THR GLN ASP GLN VAL SEQRES 12 E 303 ASP ARG ALA ASP THR PHE PRO GLN VAL LEU LYS LYS VAL SEQRES 13 E 303 ILE ASP TRP MSE LYS LEU LYS GLU LEU GLY THR LYS TYR SEQRES 14 E 303 LYS TYR SER LEU LEU THR ASP GLY SER TRP ASP MSE SER SEQRES 15 E 303 LYS PHE LEU ASN ILE GLN CYS GLN LEU SER ARG LEU LYS SEQRES 16 E 303 TYR PRO PRO PHE ALA LYS LYS TRP ILE ASN ILE ARG LYS SEQRES 17 E 303 SER TYR GLY ASN PHE TYR LYS VAL PRO ARG SER GLN THR SEQRES 18 E 303 LYS LEU THR ILE MSE LEU GLU LYS LEU GLY MSE ASP TYR SEQRES 19 E 303 ASP GLY ARG PRO HIS CYS GLY LEU ASP ASP SER LYS ASN SEQRES 20 E 303 ILE ALA ARG ILE ALA VAL ARG MSE LEU GLN ASP GLY CYS SEQRES 21 E 303 GLU LEU ARG ILE ASN GLU LYS MSE HIS ALA GLY GLN LEU SEQRES 22 E 303 MSE SER VAL SER SER SER LEU PRO ILE GLU GLY THR PRO SEQRES 23 E 303 PRO PRO GLN MSE PRO HIS PHE ARG LYS LEU GLU HIS HIS SEQRES 24 E 303 HIS HIS HIS HIS MODRES 4L8R MSE B 79 MET SELENOMETHIONINE MODRES 4L8R MSE B 116 MET SELENOMETHIONINE MODRES 4L8R MSE B 214 MET SELENOMETHIONINE MODRES 4L8R MSE B 235 MET SELENOMETHIONINE MODRES 4L8R MSE B 280 MET SELENOMETHIONINE MODRES 4L8R MSE B 286 MET SELENOMETHIONINE MODRES 4L8R MSE B 309 MET SELENOMETHIONINE MODRES 4L8R MSE B 322 MET SELENOMETHIONINE MODRES 4L8R MSE B 328 MET SELENOMETHIONINE MODRES 4L8R MSE B 344 MET SELENOMETHIONINE MODRES 4L8R MSE E 79 MET SELENOMETHIONINE MODRES 4L8R MSE E 116 MET SELENOMETHIONINE MODRES 4L8R MSE E 214 MET SELENOMETHIONINE MODRES 4L8R MSE E 235 MET SELENOMETHIONINE MODRES 4L8R MSE E 280 MET SELENOMETHIONINE MODRES 4L8R MSE E 286 MET SELENOMETHIONINE MODRES 4L8R MSE E 309 MET SELENOMETHIONINE MODRES 4L8R MSE E 322 MET SELENOMETHIONINE MODRES 4L8R MSE E 328 MET SELENOMETHIONINE MODRES 4L8R MSE E 344 MET SELENOMETHIONINE HET MSE B 79 8 HET MSE B 116 8 HET MSE B 214 8 HET MSE B 235 8 HET MSE B 280 8 HET MSE B 286 8 HET MSE B 309 8 HET MSE B 322 8 HET MSE B 328 8 HET MSE B 344 8 HET MSE E 79 8 HET MSE E 116 8 HET MSE E 214 8 HET MSE E 235 8 HET MSE E 280 8 HET MSE E 286 8 HET MSE E 309 8 HET MSE E 322 8 HET MSE E 328 8 HET MSE E 344 8 HETNAM MSE SELENOMETHIONINE FORMUL 2 MSE 20(C5 H11 N O2 SE) FORMUL 6 HOH *135(H2 O) HELIX 1 1 ASP B 63 ARG B 78 1 16 HELIX 2 2 SER B 80 PHE B 91 1 12 HELIX 3 3 VAL B 98 LEU B 115 1 18 HELIX 4 4 SER B 183 GLY B 191 1 9 HELIX 5 5 THR B 193 ARG B 199 1 7 HELIX 6 6 THR B 202 LYS B 217 1 16 HELIX 7 7 SER B 232 LYS B 237 1 6 HELIX 8 8 LYS B 237 ARG B 247 1 11 HELIX 9 9 PRO B 251 ALA B 254 5 4 HELIX 10 10 ILE B 260 LYS B 269 1 10 HELIX 11 11 LYS B 276 LYS B 283 1 8 HELIX 12 12 CYS B 294 ASP B 312 1 19 HELIX 13 13 ASP C 131 ASN C 147 1 17 HELIX 14 14 THR C 148 VAL C 158 1 11 HELIX 15 15 SER C 179 HIS C 195 1 17 HELIX 16 16 PHE C 196 ASP C 198 5 3 HELIX 17 17 VAL E 65 ARG E 78 1 14 HELIX 18 18 SER E 80 PHE E 91 1 12 HELIX 19 19 VAL E 98 LEU E 115 1 18 HELIX 20 20 SER E 183 GLY E 191 1 9 HELIX 21 21 THR E 193 ARG E 199 1 7 HELIX 22 22 THR E 202 LYS E 217 1 16 HELIX 23 23 SER E 232 LYS E 237 1 6 HELIX 24 24 LYS E 237 SER E 246 1 10 HELIX 25 25 PRO E 251 ALA E 254 5 4 HELIX 26 26 ILE E 260 LYS E 269 1 10 HELIX 27 27 LYS E 276 LEU E 284 1 9 HELIX 28 28 CYS E 294 ASP E 312 1 19 SHEET 1 A 3 GLU B 136 ALA B 137 0 SHEET 2 A 3 ILE B 151 ASN B 160 -1 O ILE B 152 N GLU B 136 SHEET 3 A 3 ILE B 166 TYR B 173 -1 O GLN B 172 N PHE B 154 SHEET 1 B 7 GLU B 136 ALA B 137 0 SHEET 2 B 7 ILE B 151 ASN B 160 -1 O ILE B 152 N GLU B 136 SHEET 3 B 7 TYR B 129 ILE B 132 -1 N ILE B 132 O VAL B 157 SHEET 4 B 7 TYR B 225 THR B 229 1 O LEU B 228 N CYS B 131 SHEET 5 B 7 LYS B 256 ASN B 259 1 O ILE B 258 N THR B 229 SHEET 6 B 7 GLU B 320 MSE B 322 -1 O GLU B 320 N TRP B 257 SHEET 7 B 7 LEU B 327 SER B 329 -1 O MSE B 328 N LYS B 321 SHEET 1 C 3 GLU E 136 ALA E 137 0 SHEET 2 C 3 ILE E 151 ASN E 160 -1 O ILE E 152 N GLU E 136 SHEET 3 C 3 ILE E 166 TYR E 173 -1 O PHE E 170 N VAL E 156 SHEET 1 D 7 GLU E 136 ALA E 137 0 SHEET 2 D 7 ILE E 151 ASN E 160 -1 O ILE E 152 N GLU E 136 SHEET 3 D 7 TYR E 129 ILE E 133 -1 N ILE E 130 O LEU E 159 SHEET 4 D 7 TYR E 225 THR E 229 1 O LEU E 228 N CYS E 131 SHEET 5 D 7 LYS E 256 ASN E 259 1 O ILE E 258 N THR E 229 SHEET 6 D 7 GLU E 320 HIS E 323 -1 O GLU E 320 N TRP E 257 SHEET 7 D 7 GLN E 326 SER E 329 -1 O MSE E 328 N LYS E 321 LINK C ARG B 78 N MSE B 79 1555 1555 1.33 LINK C MSE B 79 N SER B 80 1555 1555 1.33 LINK C LEU B 115 N MSE B 116 1555 1555 1.33 LINK C TRP B 213 N MSE B 214 1555 1555 1.32 LINK C MSE B 214 N LYS B 215 1555 1555 1.33 LINK C ASP B 234 N MSE B 235 1555 1555 1.33 LINK C MSE B 235 N SER B 236 1555 1555 1.33 LINK C ILE B 279 N MSE B 280 1555 1555 1.33 LINK C MSE B 280 N LEU B 281 1555 1555 1.33 LINK C GLY B 285 N MSE B 286 1555 1555 1.33 LINK C MSE B 286 N ASP B 287 1555 1555 1.33 LINK C ARG B 308 N MSE B 309 1555 1555 1.32 LINK C MSE B 309 N LEU B 310 1555 1555 1.33 LINK C LYS B 321 N MSE B 322 1555 1555 1.32 LINK C MSE B 322 N HIS B 323 1555 1555 1.33 LINK C LEU B 327 N MSE B 328 1555 1555 1.32 LINK C MSE B 328 N SER B 329 1555 1555 1.33 LINK C GLN B 343 N MSE B 344 1555 1555 1.33 LINK C MSE B 344 N PRO B 345 1555 1555 1.34 LINK C ARG E 78 N MSE E 79 1555 1555 1.33 LINK C MSE E 79 N SER E 80 1555 1555 1.33 LINK C LEU E 115 N MSE E 116 1555 1555 1.33 LINK C TRP E 213 N MSE E 214 1555 1555 1.32 LINK C MSE E 214 N LYS E 215 1555 1555 1.33 LINK C ASP E 234 N MSE E 235 1555 1555 1.33 LINK C MSE E 235 N SER E 236 1555 1555 1.33 LINK C ILE E 279 N MSE E 280 1555 1555 1.33 LINK C MSE E 280 N LEU E 281 1555 1555 1.33 LINK C GLY E 285 N MSE E 286 1555 1555 1.33 LINK C MSE E 286 N ASP E 287 1555 1555 1.33 LINK C ARG E 308 N MSE E 309 1555 1555 1.33 LINK C MSE E 309 N LEU E 310 1555 1555 1.32 LINK C LYS E 321 N MSE E 322 1555 1555 1.32 LINK C MSE E 322 N HIS E 323 1555 1555 1.32 LINK C LEU E 327 N MSE E 328 1555 1555 1.33 LINK C MSE E 328 N SER E 329 1555 1555 1.32 LINK C GLN E 343 N MSE E 344 1555 1555 1.33 LINK C MSE E 344 N PRO E 345 1555 1555 1.34 CRYST1 81.758 90.802 128.636 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012231 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007774 0.00000